Wall clock time and date at job start Tue Mar 31 2020 06:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47045 * 2 1 4 4 O 1.45199 * 109.46543 * 240.00396 * 2 1 3 5 5 C 1.34231 * 117.00240 * 90.00090 * 4 2 1 6 6 O 1.20821 * 119.99754 * 359.97438 * 5 4 2 7 7 C 1.50696 * 119.99954 * 179.97438 * 5 4 2 8 8 C 1.53000 * 113.56498 * 314.27227 * 7 5 4 9 9 C 1.53367 * 114.56734 * 179.97438 * 7 5 4 10 10 O 1.43348 * 88.49370 * 220.44061 * 9 7 5 11 11 C 1.43342 * 88.32461 * 28.12684 * 10 9 7 12 12 C 1.50696 * 109.47453 * 120.00023 * 2 1 3 13 13 O 1.21287 * 119.99681 * 119.99667 * 12 2 1 14 14 N 1.34777 * 120.00310 * 300.00544 * 12 2 1 15 15 C 1.46506 * 119.99655 * 359.97438 * 14 12 2 16 16 C 1.46492 * 120.00347 * 180.02562 * 14 12 2 17 17 C 1.50707 * 109.47416 * 89.99115 * 16 14 12 18 18 H 1.08000 * 119.99819 * 0.02562 * 17 16 14 19 19 C 1.37872 * 120.00060 * 180.02562 * 17 16 14 20 20 N 1.31517 * 120.00265 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99804 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47445 * 59.99905 * 21 19 17 23 23 H 1.48506 * 109.46999 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46880 * 299.99713 * 21 19 17 25 25 H 1.09002 * 109.46959 * 299.99289 * 1 2 3 26 26 H 1.08990 * 109.47305 * 59.99962 * 1 2 3 27 27 H 1.09004 * 109.46773 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47611 * 285.72502 * 8 7 5 29 29 H 1.09001 * 109.47881 * 45.72581 * 8 7 5 30 30 H 1.09007 * 109.47438 * 165.72888 * 8 7 5 31 31 H 1.09002 * 113.39529 * 105.51972 * 9 7 5 32 32 H 1.09005 * 113.38849 * 335.36264 * 9 7 5 33 33 H 1.09005 * 113.39677 * 86.74628 * 11 10 9 34 34 H 1.08999 * 113.39618 * 216.90341 * 11 10 9 35 35 H 1.08999 * 109.46820 * 90.00434 * 15 14 12 36 36 H 1.08999 * 109.47056 * 210.00756 * 15 14 12 37 37 H 1.09001 * 109.47142 * 330.00537 * 15 14 12 38 38 H 1.08995 * 109.47445 * 209.99349 * 16 14 12 39 39 H 1.08998 * 109.47231 * 329.99564 * 16 14 12 40 40 H 0.97000 * 120.00345 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0139 -0.6844 -1.1856 5 6 2.2170 0.0641 -2.2812 6 8 1.9973 1.2518 -2.2506 7 6 2.7191 -0.5769 -3.5493 8 6 3.8867 -1.5402 -3.3269 9 6 2.9063 0.3924 -4.7229 10 8 2.3641 -0.6121 -5.5899 11 6 1.6175 -1.1129 -4.4734 12 6 2.0325 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1190 14 7 1.7069 -0.2500 2.4546 15 6 0.8649 0.9414 2.5890 16 6 2.1957 -0.9403 3.6506 17 6 3.5232 -0.3562 4.0605 18 1 3.9589 0.4489 3.4875 19 6 4.1814 -0.8498 5.1669 20 7 3.6511 -1.8306 5.8643 21 14 5.8264 -0.1253 5.6752 22 1 5.6603 1.3203 5.9718 23 1 6.3220 -0.8251 6.8877 24 1 6.8044 -0.2948 4.5707 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 4.7940 -0.9710 -3.1247 29 1 3.6673 -2.1876 -2.4778 30 1 4.0310 -2.1486 -4.2198 31 1 3.9510 0.6248 -4.9299 32 1 2.2836 1.2842 -4.6512 33 1 0.6578 -0.6146 -4.3359 34 1 1.5322 -2.1995 -4.4622 35 1 -0.1831 0.6437 2.6222 36 1 1.1228 1.4666 3.5086 37 1 1.0287 1.6001 1.7362 38 1 1.4779 -0.8151 4.4613 39 1 2.3173 -2.0015 3.4336 40 1 4.1139 -2.1776 6.6430 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782399025.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:27 Heat of formation + Delta-G solvation = -119.585346 kcal Electronic energy + Delta-G solvation = -23303.453197 eV Core-core repulsion = 19699.737143 eV Total energy + Delta-G solvation = -3603.716054 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.86364 -40.23933 -38.86107 -36.45792 -34.99940 -33.11769 -32.64707 -31.40304 -27.71889 -26.93855 -26.69001 -26.30325 -24.78370 -23.53721 -21.96008 -19.63017 -18.93210 -18.10100 -17.11406 -16.62725 -16.57639 -16.30949 -16.14075 -15.70443 -15.38802 -14.63276 -14.48042 -13.84830 -13.72518 -13.66180 -13.04952 -12.86136 -12.76776 -12.45215 -12.29976 -12.24202 -12.14201 -11.95610 -11.68971 -11.42934 -11.18948 -11.00920 -10.96607 -10.77171 -10.60813 -10.50161 -10.20490 -10.12906 -9.70840 -8.96357 -8.47856 -7.77866 -6.09151 -4.14495 1.91703 2.36836 3.20520 3.29615 3.34007 3.37824 3.43018 3.60326 3.81234 4.38319 4.40573 4.53876 4.71722 4.78449 4.90553 4.92812 5.03903 5.15137 5.25432 5.30530 5.41302 5.44334 5.47766 5.58361 5.59295 5.62223 5.64269 5.78961 5.93044 6.01407 6.17164 6.32355 6.93396 7.34473 7.41293 7.58434 7.86439 8.16112 8.23940 8.79730 8.94563 9.50753 10.98948 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.024183 B = 0.003901 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.550516 B = 7176.697224 C = 7706.953111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.068 3.932 3 H 0.106 0.894 4 O -0.318 6.318 5 C 0.476 3.524 6 O -0.506 6.506 7 C -0.131 4.131 8 C -0.128 4.128 9 C 0.053 3.947 10 O -0.358 6.358 11 C 0.053 3.947 12 C 0.509 3.491 13 O -0.519 6.519 14 N -0.595 5.595 15 C 0.075 3.925 16 C 0.247 3.753 17 C -0.531 4.531 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.276 1.276 25 H 0.094 0.906 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.036 0.964 39 H 0.046 0.954 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.729 4.450 -17.062 18.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.010 3.990 3 H 0.124 0.876 4 O -0.232 6.232 5 C 0.319 3.681 6 O -0.395 6.395 7 C -0.132 4.132 8 C -0.185 4.185 9 C -0.023 4.023 10 O -0.276 6.276 11 C -0.024 4.024 12 C 0.293 3.707 13 O -0.395 6.395 14 N -0.329 5.329 15 C -0.068 4.068 16 C 0.129 3.871 17 C -0.570 4.570 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.533 5.533 21 Si 0.726 3.274 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.112 0.888 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.372 4.065 -17.165 18.756 hybrid contribution 0.835 0.721 0.675 1.293 sum -5.538 4.786 -16.490 18.041 Atomic orbital electron populations 1.22403 0.92373 1.04147 1.04325 1.22665 0.95751 0.97693 0.82931 0.87644 1.86612 1.76009 1.41292 1.19325 1.23266 0.74084 0.85638 0.85159 1.90644 1.48310 1.16362 1.84149 1.23338 1.00201 0.99722 0.89952 1.21580 0.94723 0.98136 1.04066 1.23775 1.01824 0.92301 0.84441 1.89912 1.62095 1.46602 1.29036 1.23693 0.94236 1.01951 0.82516 1.19746 0.81745 0.85417 0.83804 1.90708 1.36921 1.25979 1.85855 1.48063 1.49799 1.28343 1.06664 1.21891 0.93968 0.88032 1.02949 1.19350 0.94355 0.93751 0.79682 1.21387 1.04899 1.19255 1.11440 0.92479 1.24924 0.97974 0.94892 0.96172 1.69918 1.39101 1.25893 1.18349 0.86546 0.83792 0.79066 0.77952 1.20205 1.21090 1.20146 0.88782 0.91433 0.90923 0.91045 0.89544 0.90408 0.88297 0.88512 0.89559 0.87791 0.92979 0.90266 0.92316 0.94578 0.93622 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 9.18 37.16 0.34 -1.84 16 2 C 0.07 1.10 2.18 -27.88 -0.06 1.04 16 3 H 0.11 1.66 6.41 -51.93 -0.33 1.33 16 4 O -0.32 -5.14 8.96 -45.91 -0.41 -5.55 16 5 C 0.48 6.65 7.12 36.00 0.26 6.90 16 6 O -0.51 -7.73 15.20 -18.75 -0.28 -8.01 16 7 C -0.13 -1.42 1.56 -155.24 -0.24 -1.66 16 8 C -0.13 -1.32 9.26 37.16 0.34 -0.97 16 9 C 0.05 0.52 7.71 24.59 0.19 0.71 16 10 O -0.36 -3.81 12.60 -35.23 -0.44 -4.25 16 11 C 0.05 0.49 7.86 24.64 0.19 0.68 16 12 C 0.51 10.68 7.15 -10.99 -0.08 10.61 16 13 O -0.52 -13.23 16.08 -14.11 -0.23 -13.46 16 14 N -0.60 -12.36 2.86 -182.95 -0.52 -12.88 16 15 C 0.08 1.14 8.80 59.85 0.53 1.66 16 16 C 0.25 6.35 5.16 -5.19 -0.03 6.32 16 17 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 18 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 21 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H 0.09 1.03 4.53 -51.93 -0.24 0.80 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 1.03 7.78 -51.93 -0.40 0.62 16 30 H 0.08 0.67 7.95 -51.92 -0.41 0.26 16 31 H 0.10 0.81 8.13 -51.93 -0.42 0.39 16 32 H 0.10 0.94 7.47 -51.93 -0.39 0.55 16 33 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.10 0.80 8.13 -51.93 -0.42 0.38 16 35 H 0.05 0.65 6.95 -51.93 -0.36 0.28 16 36 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 37 H 0.06 0.75 6.01 -51.93 -0.31 0.43 16 38 H 0.04 0.92 8.07 -51.93 -0.42 0.51 16 39 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 336.24 15.07 5.07 5.07 Total: -1.00 -34.04 336.24 -5.83 -39.87 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -5.75 Total: -1.85 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 1.02 Total: 9.89 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.21 Total: -38.39 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -1.37 Total: -31.27 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.04 -5.83 -39.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782399025.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.711 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds