Wall clock time and date at job start Tue Mar 31 2020 06:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47045 * 2 1 4 4 O 1.45199 * 109.46543 * 240.00396 * 2 1 3 5 5 C 1.34231 * 117.00240 * 90.00090 * 4 2 1 6 6 O 1.20821 * 119.99754 * 359.97438 * 5 4 2 7 7 C 1.50696 * 119.99954 * 179.97438 * 5 4 2 8 8 C 1.53000 * 113.56498 * 314.27227 * 7 5 4 9 9 C 1.53367 * 114.56734 * 179.97438 * 7 5 4 10 10 O 1.43348 * 88.49370 * 220.44061 * 9 7 5 11 11 C 1.43342 * 88.32461 * 28.12684 * 10 9 7 12 12 C 1.50696 * 109.47453 * 120.00023 * 2 1 3 13 13 O 1.21287 * 119.99681 * 119.99667 * 12 2 1 14 14 N 1.34777 * 120.00310 * 300.00544 * 12 2 1 15 15 C 1.46506 * 119.99655 * 359.97438 * 14 12 2 16 16 C 1.46492 * 120.00347 * 180.02562 * 14 12 2 17 17 C 1.50707 * 109.47416 * 89.99115 * 16 14 12 18 18 H 1.08000 * 119.99819 * 0.02562 * 17 16 14 19 19 C 1.37872 * 120.00060 * 180.02562 * 17 16 14 20 20 N 1.31517 * 120.00265 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99804 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47445 * 59.99905 * 21 19 17 23 23 H 1.48506 * 109.46999 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46880 * 299.99713 * 21 19 17 25 25 H 1.09002 * 109.46959 * 299.99289 * 1 2 3 26 26 H 1.08990 * 109.47305 * 59.99962 * 1 2 3 27 27 H 1.09004 * 109.46773 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47611 * 285.72502 * 8 7 5 29 29 H 1.09001 * 109.47881 * 45.72581 * 8 7 5 30 30 H 1.09007 * 109.47438 * 165.72888 * 8 7 5 31 31 H 1.09002 * 113.39529 * 105.51972 * 9 7 5 32 32 H 1.09005 * 113.38849 * 335.36264 * 9 7 5 33 33 H 1.09005 * 113.39677 * 86.74628 * 11 10 9 34 34 H 1.08999 * 113.39618 * 216.90341 * 11 10 9 35 35 H 1.08999 * 109.46820 * 90.00434 * 15 14 12 36 36 H 1.08999 * 109.47056 * 210.00756 * 15 14 12 37 37 H 1.09001 * 109.47142 * 330.00537 * 15 14 12 38 38 H 1.08995 * 109.47445 * 209.99349 * 16 14 12 39 39 H 1.08998 * 109.47231 * 329.99564 * 16 14 12 40 40 H 0.97000 * 120.00345 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0139 -0.6844 -1.1856 5 6 2.2170 0.0641 -2.2812 6 8 1.9973 1.2518 -2.2506 7 6 2.7191 -0.5769 -3.5493 8 6 3.8867 -1.5402 -3.3269 9 6 2.9063 0.3924 -4.7229 10 8 2.3641 -0.6121 -5.5899 11 6 1.6175 -1.1129 -4.4734 12 6 2.0325 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1190 14 7 1.7069 -0.2500 2.4546 15 6 0.8649 0.9414 2.5890 16 6 2.1957 -0.9403 3.6506 17 6 3.5232 -0.3562 4.0605 18 1 3.9589 0.4489 3.4875 19 6 4.1814 -0.8498 5.1669 20 7 3.6511 -1.8306 5.8643 21 14 5.8264 -0.1253 5.6752 22 1 5.6603 1.3203 5.9718 23 1 6.3220 -0.8251 6.8877 24 1 6.8044 -0.2948 4.5707 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 4.7940 -0.9710 -3.1247 29 1 3.6673 -2.1876 -2.4778 30 1 4.0310 -2.1486 -4.2198 31 1 3.9510 0.6248 -4.9299 32 1 2.2836 1.2842 -4.6512 33 1 0.6578 -0.6146 -4.3359 34 1 1.5322 -2.1995 -4.4622 35 1 -0.1831 0.6437 2.6222 36 1 1.1228 1.4666 3.5086 37 1 1.0287 1.6001 1.7362 38 1 1.4779 -0.8151 4.4613 39 1 2.3173 -2.0015 3.4336 40 1 4.1139 -2.1776 6.6430 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782399025.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:27 Heat of formation + Delta-G solvation = -142.374070 kcal Electronic energy + Delta-G solvation = -23304.441391 eV Core-core repulsion = 19699.737143 eV Total energy + Delta-G solvation = -3604.704248 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.77626 -41.44714 -40.31973 -37.68724 -36.74143 -34.95293 -33.78367 -32.69971 -29.57645 -27.79950 -27.70624 -27.41687 -26.11757 -25.12475 -23.38867 -20.66150 -20.46132 -19.07295 -18.69738 -18.35319 -17.64091 -17.54750 -17.19041 -17.07091 -16.60341 -16.39453 -15.97122 -15.13668 -14.91354 -14.60208 -14.43069 -14.22850 -13.88025 -13.75329 -13.58507 -13.51933 -13.34608 -13.05891 -12.99192 -12.84391 -12.81747 -12.61569 -12.43810 -12.20759 -11.96961 -11.80893 -11.75064 -11.49707 -10.92584 -10.65916 -10.63449 -9.53409 -8.24903 -6.39750 0.83716 1.22408 1.36144 1.39935 1.47174 1.60101 2.27671 2.40952 2.66579 2.80912 3.05187 3.36411 3.45598 3.61889 3.75054 3.82478 3.97903 4.19777 4.30279 4.47124 4.49725 4.59322 4.60401 4.64902 4.66227 4.70281 4.83964 4.85645 4.86302 4.94024 5.09022 5.15328 5.18637 5.24385 5.49373 5.76385 6.01927 6.42860 6.59845 6.68843 7.18684 7.34346 8.82207 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.024183 B = 0.003901 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.550516 B = 7176.697224 C = 7706.953111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.077 3.923 3 H 0.114 0.886 4 O -0.336 6.336 5 C 0.477 3.523 6 O -0.520 6.520 7 C -0.137 4.137 8 C -0.125 4.125 9 C 0.058 3.942 10 O -0.368 6.368 11 C 0.057 3.943 12 C 0.499 3.501 13 O -0.578 6.578 14 N -0.599 5.599 15 C 0.067 3.933 16 C 0.261 3.739 17 C -0.549 4.549 18 H 0.052 0.948 19 C 0.011 3.989 20 N -0.926 5.926 21 Si 0.966 3.034 22 H -0.260 1.260 23 H -0.277 1.277 24 H -0.279 1.279 25 H 0.112 0.888 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.034 0.966 39 H 0.001 0.999 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.199 6.147 -18.226 20.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 H 0.132 0.868 4 O -0.251 6.251 5 C 0.320 3.680 6 O -0.408 6.408 7 C -0.138 4.138 8 C -0.182 4.182 9 C -0.019 4.019 10 O -0.287 6.287 11 C -0.020 4.020 12 C 0.286 3.714 13 O -0.458 6.458 14 N -0.331 5.331 15 C -0.074 4.074 16 C 0.140 3.860 17 C -0.588 4.588 18 H 0.070 0.930 19 C -0.188 4.188 20 N -0.565 5.565 21 Si 0.790 3.210 22 H -0.184 1.184 23 H -0.202 1.202 24 H -0.205 1.205 25 H 0.130 0.870 26 H 0.107 0.893 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.132 0.868 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.137 0.863 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.052 0.948 39 H 0.019 0.981 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.884 5.811 -18.340 20.433 hybrid contribution 0.952 0.181 1.016 1.405 sum -5.932 5.992 -17.323 19.266 Atomic orbital electron populations 1.22416 0.89084 1.04649 1.06240 1.22563 0.97986 0.96636 0.80936 0.86842 1.86628 1.76482 1.42178 1.19812 1.23844 0.73431 0.85509 0.85178 1.90626 1.49012 1.16868 1.84339 1.23505 1.01084 1.00536 0.88681 1.21554 0.94611 0.97970 1.04058 1.23834 1.02805 0.91912 0.83315 1.89913 1.62447 1.46910 1.29435 1.23831 0.93977 1.03047 0.81133 1.20650 0.80704 0.84879 0.85169 1.90668 1.39546 1.28694 1.86862 1.48037 1.50109 1.29544 1.05411 1.22249 0.94772 0.86281 1.04114 1.18836 0.93910 0.91802 0.81470 1.21672 1.06069 1.19337 1.11691 0.92981 1.25815 1.01690 0.95176 0.96141 1.70029 1.40711 1.26962 1.18792 0.85500 0.78868 0.79138 0.77509 1.18447 1.20160 1.20492 0.86982 0.89287 0.91188 0.91010 0.91632 0.88538 0.86813 0.88348 0.88438 0.86291 0.89524 0.90710 0.89351 0.94850 0.98069 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.71 9.18 71.98 0.66 -3.05 16 2 C 0.08 2.40 2.18 29.85 0.07 2.47 16 3 H 0.11 3.36 6.41 -2.39 -0.02 3.35 16 4 O -0.34 -10.70 8.96 -45.07 -0.40 -11.11 16 5 C 0.48 12.73 7.12 71.23 0.51 13.24 16 6 O -0.52 -14.93 15.20 21.98 0.33 -14.59 16 7 C -0.14 -2.78 1.56 -52.65 -0.08 -2.86 16 8 C -0.12 -2.48 9.26 71.98 0.67 -1.82 16 9 C 0.06 1.01 7.71 63.84 0.49 1.50 16 10 O -0.37 -7.02 12.60 -148.98 -1.88 -8.90 16 11 C 0.06 0.93 7.86 63.87 0.50 1.43 16 12 C 0.50 21.27 7.15 87.66 0.63 21.90 16 13 O -0.58 -30.83 16.08 15.75 0.25 -30.57 16 14 N -0.60 -24.98 2.86 -851.13 -2.43 -27.41 16 15 C 0.07 1.90 8.80 127.77 1.12 3.02 16 16 C 0.26 13.84 5.16 85.64 0.44 14.29 16 17 C -0.55 -31.48 9.39 25.60 0.24 -31.24 16 18 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 19 C 0.01 0.65 5.46 84.65 0.46 1.11 16 20 N -0.93 -55.36 13.29 21.45 0.28 -55.08 16 21 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 22 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 23 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 25 H 0.11 2.05 4.53 -2.39 -0.01 2.04 16 26 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 27 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 1.58 7.78 -2.39 -0.02 1.57 16 30 H 0.10 1.53 7.95 -2.38 -0.02 1.51 16 31 H 0.11 1.63 8.13 -2.39 -0.02 1.61 16 32 H 0.10 1.70 7.47 -2.38 -0.02 1.69 16 33 H 0.10 1.39 8.10 -2.38 -0.02 1.37 16 34 H 0.12 1.58 8.13 -2.39 -0.02 1.56 16 35 H 0.09 1.87 6.95 -2.39 -0.02 1.85 16 36 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 37 H 0.09 1.97 6.01 -2.39 -0.01 1.96 16 38 H 0.03 1.76 8.07 -2.39 -0.02 1.75 16 39 H 0.00 0.07 7.42 -2.39 -0.02 0.05 16 40 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -76.09 336.24 4.94 -71.16 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 1.04 Total: 9.89 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 5.71 Total: 19.99 kcal Atomic # 7 Polarization: -80.34 SS G_CDS: -2.15 Total: -82.48 kcal Atomic # 8 Polarization: -63.48 SS G_CDS: -1.69 Total: -65.17 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -76.09 4.94 -71.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782399025.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.216 kcal (2) G-P(sol) polarization free energy of solvation -76.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds