Wall clock time and date at job start Tue Mar 31 2020 05:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47113 * 2 1 4 4 C 1.52999 * 109.47066 * 119.99935 * 2 1 3 5 5 N 1.46902 * 109.47308 * 175.47213 * 4 2 1 6 6 C 1.46896 * 111.00104 * 282.54869 * 5 4 2 7 7 C 1.50700 * 109.47567 * 76.36081 * 6 5 4 8 8 H 1.07998 * 119.99576 * 3.44479 * 7 6 5 9 9 C 1.37873 * 119.99772 * 183.44037 * 7 6 5 10 10 N 1.31509 * 120.00305 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99417 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47612 * 90.00313 * 11 9 7 13 13 H 1.48505 * 109.46981 * 210.00067 * 11 9 7 14 14 H 1.48500 * 109.47125 * 329.99496 * 11 9 7 15 15 C 1.46896 * 111.00047 * 158.58877 * 5 4 2 16 16 C 1.50707 * 109.47433 * 288.53236 * 15 5 4 17 17 C 1.35379 * 126.13347 * 277.78571 * 16 15 5 18 18 Cl 1.73596 * 126.04451 * 0.03593 * 17 16 15 19 19 C 1.39926 * 107.90507 * 179.97438 * 17 16 15 20 20 N 1.30851 * 108.21473 * 0.02562 * 19 17 16 21 21 N 1.35042 * 126.13603 * 97.47502 * 16 15 5 22 22 C 1.46503 * 126.03832 * 359.96853 * 21 16 15 23 23 H 1.08994 * 109.47325 * 299.99777 * 1 2 3 24 24 H 1.08993 * 109.47167 * 60.00704 * 1 2 3 25 25 H 1.09002 * 109.47116 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47017 * 239.99604 * 2 1 3 27 27 H 1.08998 * 109.46922 * 182.47557 * 3 2 1 28 28 H 1.08999 * 109.46610 * 302.47670 * 3 2 1 29 29 H 1.08997 * 109.46827 * 62.47713 * 3 2 1 30 30 H 1.09006 * 109.47572 * 55.47351 * 4 2 1 31 31 H 1.09001 * 109.47174 * 295.47476 * 4 2 1 32 32 H 1.08999 * 109.46739 * 196.36614 * 6 5 4 33 33 H 1.09004 * 109.47134 * 316.35788 * 6 5 4 34 34 H 0.97005 * 119.99875 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.47460 * 48.53049 * 15 5 4 36 36 H 1.09004 * 109.47331 * 168.53161 * 15 5 4 37 37 H 1.07994 * 125.89435 * 179.97438 * 19 17 16 38 38 H 1.08994 * 109.47654 * 95.44974 * 22 21 16 39 39 H 1.08996 * 109.46857 * 215.45776 * 22 21 16 40 40 H 1.09001 * 109.46666 * 335.45006 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5049 -0.8167 1.1959 6 6 3.9300 -1.8820 0.2782 7 6 3.7758 -1.4105 -1.1448 8 1 3.4527 -0.4000 -1.3468 9 6 4.0473 -2.2693 -2.1888 10 7 4.4404 -3.4999 -1.9428 11 14 3.8568 -1.6845 -3.9527 12 1 5.1402 -1.1042 -4.4232 13 1 3.4865 -2.8333 -4.8177 14 1 2.7923 -0.6513 -4.0194 15 6 4.0683 -1.0211 2.5370 16 6 3.9380 0.2501 3.3359 17 6 4.7739 1.3139 3.2854 18 17 6.1871 1.4561 2.2872 19 6 4.2964 2.2789 4.1790 20 7 3.2137 1.8114 4.7458 21 7 2.9633 0.5349 4.2261 22 6 1.8433 -0.3380 4.5865 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1291 1.4428 -0.0444 28 1 1.6408 1.9689 -0.8670 29 1 1.7133 1.9433 0.9114 30 1 1.6119 -1.7229 1.2908 31 1 1.7443 -0.1627 2.1374 32 1 4.9744 -2.1295 0.4678 33 1 3.3125 -2.7662 0.4369 34 1 4.6310 -4.1041 -2.6773 35 1 3.5279 -1.8231 3.0398 36 1 5.1212 -1.2903 2.4517 37 1 4.7447 3.2429 4.3689 38 1 2.0952 -0.8997 5.4859 39 1 0.9562 0.2673 4.7725 40 1 1.6453 -1.0311 3.7689 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783506808.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:55 Heat of formation + Delta-G solvation = 73.092089 kcal Electronic energy + Delta-G solvation = -21601.300933 eV Core-core repulsion = 18478.941915 eV Total energy + Delta-G solvation = -3122.359018 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.20552 -37.55088 -35.97000 -34.00958 -33.19983 -32.54369 -30.41660 -27.34434 -26.70845 -26.49151 -26.05181 -23.81612 -21.14106 -21.09569 -19.72358 -19.08246 -16.89962 -16.25321 -15.83752 -15.00905 -14.73885 -14.56815 -14.14129 -13.82602 -13.78209 -13.24399 -13.00701 -12.69570 -12.56003 -12.41184 -12.13963 -11.76819 -11.66233 -11.34891 -11.25935 -11.08510 -11.00599 -10.65381 -10.58696 -10.31506 -10.20807 -10.15862 -10.02965 -9.51860 -9.21626 -9.00861 -8.40067 -8.08254 -7.36959 -6.04495 -4.03083 1.87121 2.23325 2.78025 3.08242 3.31452 3.38151 3.41158 4.40164 4.60765 4.72972 4.90209 5.08507 5.13048 5.29836 5.31278 5.37805 5.56651 5.65041 5.68367 5.87745 5.95479 6.01340 6.07672 6.19807 6.23711 6.41295 6.49762 6.50471 6.64581 6.74783 6.95896 7.12223 7.16737 7.23842 7.38464 7.68362 7.82170 8.03968 8.11028 8.47113 9.02914 9.58924 11.05952 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017120 B = 0.006149 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.155781 B = 4552.569175 C = 5158.505934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.126 4.126 4 C 0.073 3.927 5 N -0.520 5.520 6 C 0.195 3.805 7 C -0.502 4.502 8 H 0.078 0.922 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.891 3.109 12 H -0.280 1.280 13 H -0.289 1.289 14 H -0.272 1.272 15 C 0.112 3.888 16 C 0.127 3.873 17 C -0.173 4.173 18 Cl -0.036 7.036 19 C 0.060 3.940 20 N -0.295 5.295 21 N -0.367 5.367 22 C 0.098 3.902 23 H 0.038 0.962 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.121 0.879 27 H 0.071 0.929 28 H 0.035 0.965 29 H 0.029 0.971 30 H 0.025 0.975 31 H 0.045 0.955 32 H 0.028 0.972 33 H -0.003 1.003 34 H 0.260 0.740 35 H 0.035 0.965 36 H 0.099 0.901 37 H 0.186 0.814 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.619 6.568 11.052 13.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.130 4.130 3 C -0.183 4.183 4 C -0.055 4.055 5 N -0.245 5.245 6 C 0.071 3.929 7 C -0.540 4.540 8 H 0.096 0.904 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.719 3.281 12 H -0.206 1.206 13 H -0.215 1.215 14 H -0.197 1.197 15 C -0.018 4.018 16 C -0.002 4.002 17 C -0.212 4.212 18 Cl -0.008 7.008 19 C -0.126 4.126 20 N -0.116 5.116 21 N -0.150 5.150 22 C -0.043 4.043 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.139 0.861 27 H 0.090 0.910 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.015 0.985 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.117 0.883 37 H 0.203 0.797 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.331 6.977 11.579 14.195 hybrid contribution 0.325 -0.674 -1.266 1.470 sum -4.006 6.303 10.313 12.734 Atomic orbital electron populations 1.21825 0.97200 1.00687 1.00357 1.21568 0.92934 0.96969 1.01521 1.21596 1.02697 0.95366 0.98667 1.22101 0.88382 0.97680 0.97354 1.62056 1.07950 1.49689 1.04761 1.19827 0.95600 0.86663 0.90828 1.21303 1.44219 0.98842 0.89632 0.90440 1.24975 0.95554 0.94888 0.99141 1.69950 1.46468 1.05502 1.31897 0.86597 0.78591 0.78202 0.84686 1.20645 1.21456 1.19704 1.20715 1.02295 0.88657 0.90170 1.20915 0.89027 0.97930 0.92346 1.20356 0.98030 0.97269 1.05533 1.98329 1.36647 1.97784 1.68053 1.23736 0.93793 0.99812 0.95262 1.77365 1.18107 0.93429 1.22727 1.48173 1.20989 1.13437 1.32410 1.21961 0.87091 0.93126 1.02125 0.94267 0.93244 0.93344 0.86100 0.91042 0.94595 0.95139 0.95641 0.93647 0.95429 0.98514 0.92993 0.94652 0.88260 0.79680 0.90696 0.89285 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.19 37.16 0.34 -1.87 16 2 C -0.11 -2.05 2.45 -90.62 -0.22 -2.28 16 3 C -0.13 -2.27 8.70 37.16 0.32 -1.94 16 4 C 0.07 1.31 3.69 -3.82 -0.01 1.29 16 5 N -0.52 -10.17 3.86 -237.51 -0.92 -11.09 16 6 C 0.20 4.66 4.77 -4.98 -0.02 4.63 16 7 C -0.50 -13.00 7.27 -34.44 -0.25 -13.25 16 8 H 0.08 1.99 5.28 -52.49 -0.28 1.71 16 9 C 0.06 1.50 5.46 -17.82 -0.10 1.40 16 10 N -0.90 -25.57 13.29 55.43 0.74 -24.83 16 11 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 15 C 0.11 1.89 4.89 -4.97 -0.02 1.86 16 16 C 0.13 2.02 5.65 -82.20 -0.46 1.56 16 17 C -0.17 -2.75 6.64 -39.97 -0.27 -3.01 16 18 Cl -0.04 -0.58 29.07 -51.86 -1.51 -2.09 16 19 C 0.06 0.86 12.02 -17.34 -0.21 0.65 16 20 N -0.30 -4.47 12.57 30.64 0.39 -4.08 16 21 N -0.37 -5.32 3.78 -63.84 -0.24 -5.56 16 22 C 0.10 1.06 10.37 59.85 0.62 1.68 16 23 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.12 2.65 4.58 -51.93 -0.24 2.41 16 27 H 0.07 1.44 7.52 -51.93 -0.39 1.05 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.03 0.47 7.69 -51.93 -0.40 0.07 16 31 H 0.05 0.74 4.67 -51.93 -0.24 0.49 16 32 H 0.03 0.71 7.64 -51.93 -0.40 0.31 16 33 H 0.00 -0.08 7.70 -51.93 -0.40 -0.48 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.04 0.55 7.18 -51.93 -0.37 0.17 16 36 H 0.10 1.73 7.69 -51.93 -0.40 1.33 16 37 H 0.19 2.04 8.06 -52.49 -0.42 1.62 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 1.00 5.39 -51.93 -0.28 0.72 16 LS Contribution 333.24 15.07 5.02 5.02 Total: -1.00 -28.85 333.24 -7.74 -36.59 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -5.91 Total: -0.67 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -0.29 Total: -9.27 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: -0.04 Total: -45.57 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.51 Total: -2.09 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.85 -7.74 -36.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783506808.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.686 kcal (2) G-P(sol) polarization free energy of solvation -28.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds