Wall clock time and date at job start Tue Mar 31 2020 05:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47113 * 2 1 4 4 C 1.52999 * 109.47066 * 119.99935 * 2 1 3 5 5 N 1.46902 * 109.47308 * 175.47213 * 4 2 1 6 6 C 1.46896 * 111.00104 * 282.54869 * 5 4 2 7 7 C 1.50700 * 109.47567 * 76.36081 * 6 5 4 8 8 H 1.07998 * 119.99576 * 3.44479 * 7 6 5 9 9 C 1.37873 * 119.99772 * 183.44037 * 7 6 5 10 10 N 1.31509 * 120.00305 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99417 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47612 * 90.00313 * 11 9 7 13 13 H 1.48505 * 109.46981 * 210.00067 * 11 9 7 14 14 H 1.48500 * 109.47125 * 329.99496 * 11 9 7 15 15 C 1.46896 * 111.00047 * 158.58877 * 5 4 2 16 16 C 1.50707 * 109.47433 * 288.53236 * 15 5 4 17 17 C 1.35379 * 126.13347 * 277.78571 * 16 15 5 18 18 Cl 1.73596 * 126.04451 * 0.03593 * 17 16 15 19 19 C 1.39926 * 107.90507 * 179.97438 * 17 16 15 20 20 N 1.30851 * 108.21473 * 0.02562 * 19 17 16 21 21 N 1.35042 * 126.13603 * 97.47502 * 16 15 5 22 22 C 1.46503 * 126.03832 * 359.96853 * 21 16 15 23 23 H 1.08994 * 109.47325 * 299.99777 * 1 2 3 24 24 H 1.08993 * 109.47167 * 60.00704 * 1 2 3 25 25 H 1.09002 * 109.47116 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47017 * 239.99604 * 2 1 3 27 27 H 1.08998 * 109.46922 * 182.47557 * 3 2 1 28 28 H 1.08999 * 109.46610 * 302.47670 * 3 2 1 29 29 H 1.08997 * 109.46827 * 62.47713 * 3 2 1 30 30 H 1.09006 * 109.47572 * 55.47351 * 4 2 1 31 31 H 1.09001 * 109.47174 * 295.47476 * 4 2 1 32 32 H 1.08999 * 109.46739 * 196.36614 * 6 5 4 33 33 H 1.09004 * 109.47134 * 316.35788 * 6 5 4 34 34 H 0.97005 * 119.99875 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.47460 * 48.53049 * 15 5 4 36 36 H 1.09004 * 109.47331 * 168.53161 * 15 5 4 37 37 H 1.07994 * 125.89435 * 179.97438 * 19 17 16 38 38 H 1.08994 * 109.47654 * 95.44974 * 22 21 16 39 39 H 1.08996 * 109.46857 * 215.45776 * 22 21 16 40 40 H 1.09001 * 109.46666 * 335.45006 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5049 -0.8167 1.1959 6 6 3.9300 -1.8820 0.2782 7 6 3.7758 -1.4105 -1.1448 8 1 3.4527 -0.4000 -1.3468 9 6 4.0473 -2.2693 -2.1888 10 7 4.4404 -3.4999 -1.9428 11 14 3.8568 -1.6845 -3.9527 12 1 5.1402 -1.1042 -4.4232 13 1 3.4865 -2.8333 -4.8177 14 1 2.7923 -0.6513 -4.0194 15 6 4.0683 -1.0211 2.5370 16 6 3.9380 0.2501 3.3359 17 6 4.7739 1.3139 3.2854 18 17 6.1871 1.4561 2.2872 19 6 4.2964 2.2789 4.1790 20 7 3.2137 1.8114 4.7458 21 7 2.9633 0.5349 4.2261 22 6 1.8433 -0.3380 4.5865 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1291 1.4428 -0.0444 28 1 1.6408 1.9689 -0.8670 29 1 1.7133 1.9433 0.9114 30 1 1.6119 -1.7229 1.2908 31 1 1.7443 -0.1627 2.1374 32 1 4.9744 -2.1295 0.4678 33 1 3.3125 -2.7662 0.4369 34 1 4.6310 -4.1041 -2.6773 35 1 3.5279 -1.8231 3.0398 36 1 5.1212 -1.2903 2.4517 37 1 4.7447 3.2429 4.3689 38 1 2.0952 -0.8997 5.4859 39 1 0.9562 0.2673 4.7725 40 1 1.6453 -1.0311 3.7689 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783506808.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:54 Heat of formation + Delta-G solvation = 56.417811 kcal Electronic energy + Delta-G solvation = -21602.023984 eV Core-core repulsion = 18478.941915 eV Total energy + Delta-G solvation = -3123.082069 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.36686 -39.09517 -37.20309 -35.43068 -34.80346 -34.02150 -31.78098 -29.17010 -27.84351 -27.77985 -27.35128 -25.54778 -22.79594 -22.25812 -20.99057 -20.52889 -18.50662 -17.76917 -17.14902 -16.54995 -16.36680 -15.78430 -15.60504 -15.29615 -14.99707 -14.64704 -14.27141 -14.08496 -13.86505 -13.78401 -13.50522 -13.21152 -13.14966 -12.90005 -12.73644 -12.58197 -12.45962 -12.29324 -12.20822 -11.99497 -11.66440 -11.50206 -11.37339 -11.31263 -10.80602 -10.44777 -10.36349 -9.28169 -8.99418 -8.11237 -6.14915 0.67754 1.12170 1.43364 1.45192 1.54254 1.61970 1.92893 2.45284 3.21444 3.29227 3.54128 3.65137 3.92773 4.11022 4.23337 4.32319 4.35627 4.45732 4.48809 4.55324 4.59551 4.72118 4.76613 4.86668 4.90845 5.03466 5.12130 5.17093 5.24140 5.29569 5.40439 5.44240 5.63730 5.76163 5.86102 5.89633 6.16083 6.39264 6.54972 6.62591 6.98279 7.50747 8.99074 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017120 B = 0.006149 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.155781 B = 4552.569175 C = 5158.505934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 C -0.115 4.115 4 C 0.077 3.923 5 N -0.523 5.523 6 C 0.213 3.787 7 C -0.500 4.500 8 H 0.079 0.921 9 C 0.005 3.995 10 N -0.935 5.935 11 Si 0.949 3.051 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.263 1.263 15 C 0.115 3.885 16 C 0.117 3.883 17 C -0.186 4.186 18 Cl -0.045 7.045 19 C 0.063 3.937 20 N -0.302 5.302 21 N -0.365 5.365 22 C 0.088 3.912 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.084 0.916 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.040 0.960 30 H 0.019 0.981 31 H 0.068 0.932 32 H 0.003 0.997 33 H -0.028 1.028 34 H 0.260 0.740 35 H 0.052 0.948 36 H 0.088 0.912 37 H 0.215 0.785 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.046 8.033 11.863 15.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.133 4.133 3 C -0.172 4.172 4 C -0.051 4.051 5 N -0.247 5.247 6 C 0.087 3.913 7 C -0.538 4.538 8 H 0.097 0.903 9 C -0.193 4.193 10 N -0.577 5.577 11 Si 0.776 3.224 12 H -0.206 1.206 13 H -0.214 1.214 14 H -0.187 1.187 15 C -0.015 4.015 16 C -0.014 4.014 17 C -0.225 4.225 18 Cl -0.017 7.017 19 C -0.123 4.123 20 N -0.124 5.124 21 N -0.148 5.148 22 C -0.052 4.052 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.037 0.963 31 H 0.086 0.914 32 H 0.021 0.979 33 H -0.010 1.010 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.231 0.769 38 H 0.115 0.885 39 H 0.124 0.876 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.779 8.457 12.410 16.091 hybrid contribution 0.751 -1.108 -1.420 1.952 sum -5.028 7.349 10.990 14.145 Atomic orbital electron populations 1.21743 0.94665 1.01258 1.01710 1.21487 0.95142 0.96730 0.99914 1.21461 1.00882 0.95266 0.99589 1.22112 0.87074 0.97637 0.98239 1.61928 1.09270 1.47706 1.05843 1.19439 0.93636 0.86890 0.91318 1.21611 1.42811 0.98733 0.90672 0.90305 1.25717 0.95642 0.95013 1.02909 1.70068 1.48106 1.06647 1.32852 0.85672 0.78626 0.77845 0.80297 1.20565 1.21364 1.18683 1.20614 1.01717 0.90079 0.89083 1.20666 0.90095 0.97450 0.93150 1.20588 0.97962 0.97962 1.05957 1.98325 1.37176 1.97816 1.68390 1.24168 0.93321 1.00533 0.94259 1.77355 1.18428 0.93658 1.22948 1.48462 1.21126 1.13529 1.31655 1.22275 0.86693 0.93163 1.03022 0.92289 0.92507 0.93219 0.89766 0.93659 0.93630 0.94132 0.96284 0.91373 0.97917 1.00989 0.93125 0.93020 0.89387 0.76887 0.88532 0.87590 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.19 71.98 0.66 -3.23 16 2 C -0.11 -4.06 2.45 -10.80 -0.03 -4.09 16 3 C -0.11 -3.94 8.70 71.98 0.63 -3.32 16 4 C 0.08 2.69 3.69 86.30 0.32 3.01 16 5 N -0.52 -20.52 3.86 -905.35 -3.49 -24.01 16 6 C 0.21 10.46 4.77 85.56 0.41 10.86 16 7 C -0.50 -26.37 7.27 25.60 0.19 -26.19 16 8 H 0.08 4.09 5.28 -2.91 -0.02 4.07 16 9 C 0.00 0.26 5.46 84.65 0.46 0.72 16 10 N -0.94 -54.49 13.29 21.44 0.28 -54.21 16 11 Si 0.95 43.44 29.54 68.60 2.03 45.46 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 14 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 15 C 0.11 3.84 4.89 85.56 0.42 4.26 16 16 C 0.12 3.55 5.65 41.41 0.23 3.78 16 17 C -0.19 -5.65 6.64 22.02 0.15 -5.50 16 18 Cl -0.05 -1.43 29.07 -2.72 -0.08 -1.51 16 19 C 0.06 1.66 12.02 85.25 1.02 2.68 16 20 N -0.30 -8.37 12.57 -56.98 -0.72 -9.08 16 21 N -0.36 -9.70 3.78 -355.91 -1.35 -11.04 16 22 C 0.09 1.64 10.37 127.77 1.32 2.96 16 23 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.08 3.67 4.58 -2.39 -0.01 3.66 16 27 H 0.04 1.78 7.52 -2.39 -0.02 1.76 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.02 0.69 7.69 -2.38 -0.02 0.67 16 31 H 0.07 2.06 4.67 -2.39 -0.01 2.05 16 32 H 0.00 0.15 7.64 -2.39 -0.02 0.13 16 33 H -0.03 -1.47 7.70 -2.38 -0.02 -1.49 16 34 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 35 H 0.05 1.55 7.18 -2.39 -0.02 1.53 16 36 H 0.09 3.13 7.69 -2.38 -0.02 3.11 16 37 H 0.21 4.11 8.06 -2.91 -0.02 4.08 16 38 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.09 1.73 5.39 -2.39 -0.01 1.72 16 Total: -1.00 -61.99 333.24 3.49 -58.50 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 1.03 Total: 9.95 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 5.78 Total: -14.05 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -5.27 Total: -98.34 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.51 kcal Total: -61.99 3.49 -58.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783506808.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.914 kcal (2) G-P(sol) polarization free energy of solvation -61.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds