Wall clock time and date at job start Tue Mar 31 2020 05:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99816 * 2 1 4 4 H 1.48503 * 109.46714 * 270.00067 * 3 2 1 5 5 H 1.48496 * 109.47283 * 30.00117 * 3 2 1 6 6 H 1.48496 * 109.47251 * 150.00547 * 3 2 1 7 7 C 1.37870 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00549 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99804 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47129 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00079 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00046 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99931 * 180.02562 * 11 10 9 14 14 O 1.45204 * 109.47273 * 180.02562 * 13 11 10 15 15 C 1.34227 * 117.00307 * 179.97438 * 14 13 11 16 16 O 1.20826 * 119.99572 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00181 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.47408 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47201 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.46862 * 60.00295 * 19 18 17 21 21 O 1.42903 * 109.47256 * 60.00148 * 20 19 18 22 22 C 1.53001 * 109.47329 * 299.99879 * 20 19 18 23 23 C 1.52997 * 109.47050 * 60.00237 * 22 20 19 24 24 H 0.97005 * 119.99972 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46981 * 60.00837 * 9 7 2 26 26 H 1.08992 * 109.47507 * 300.00075 * 9 7 2 27 27 H 0.96999 * 119.99576 * 0.02562 * 10 9 7 28 28 H 1.08995 * 109.47729 * 59.99633 * 13 11 10 29 29 H 1.09001 * 109.47212 * 299.99608 * 13 11 10 30 30 H 1.09006 * 109.47347 * 300.00362 * 17 15 14 31 31 H 1.09009 * 109.46785 * 60.00103 * 18 17 15 32 32 H 1.08997 * 109.47329 * 300.00448 * 18 17 15 33 33 H 1.08997 * 109.47549 * 300.00564 * 19 18 17 34 34 H 1.08997 * 109.46932 * 180.02562 * 19 18 17 35 35 H 1.09008 * 109.47201 * 179.97438 * 20 19 18 36 36 H 0.96700 * 114.00311 * 180.02562 * 21 20 19 37 37 H 1.08999 * 109.47164 * 180.02562 * 22 20 19 38 38 H 1.08997 * 109.47124 * 299.99757 * 22 20 19 39 39 H 1.08997 * 109.46932 * 180.02562 * 23 22 20 40 40 H 1.08997 * 109.47549 * 59.99780 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7539 -4.8833 -0.0025 12 8 0.5615 -5.1050 -0.0026 13 6 2.7332 -6.0287 -0.0032 14 8 2.0072 -7.2863 -0.0045 15 6 2.7383 -8.4120 -0.0058 16 8 3.9449 -8.3486 -0.0063 17 6 2.0542 -9.7547 -0.0067 18 6 3.1079 -10.8640 -0.0087 19 6 2.4134 -12.2272 -0.0090 20 6 1.5378 -12.3532 -1.2573 21 8 2.3530 -12.2338 -2.4250 22 6 0.4841 -11.2439 -1.2554 23 6 1.1786 -9.8807 -1.2551 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 3.1567 -3.4353 -0.0021 28 1 3.3599 -5.9715 0.8867 29 1 3.3598 -5.9705 -0.8932 30 1 1.4317 -9.8460 0.8835 31 1 3.7315 -10.7744 0.8809 32 1 3.7300 -10.7726 -0.8991 33 1 1.7915 -12.3184 0.8816 34 1 3.1641 -13.0174 -0.0100 35 1 1.0433 -13.3246 -1.2578 36 1 1.8630 -12.3038 -3.2557 37 1 -0.1400 -11.3340 -2.1445 38 1 -0.1378 -11.3351 -0.3648 39 1 0.4279 -9.0905 -1.2533 40 1 1.8005 -9.7896 -2.1457 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795644066.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:18 Heat of formation + Delta-G solvation = -196.995086 kcal Electronic energy + Delta-G solvation = -22231.077496 eV Core-core repulsion = 18624.004703 eV Total energy + Delta-G solvation = -3607.072793 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.85440 -39.26987 -38.56749 -36.40448 -35.30509 -34.25018 -32.41700 -31.22765 -30.69002 -29.06014 -26.70054 -24.14582 -23.05719 -22.54553 -20.98780 -19.99246 -19.89823 -17.81335 -17.46232 -17.18996 -16.61943 -16.42631 -15.82156 -15.41769 -15.09095 -15.06123 -14.52089 -14.25598 -13.80669 -13.53350 -13.12409 -13.07110 -12.73263 -12.55641 -12.46238 -12.17318 -11.99098 -11.76058 -11.68250 -11.38347 -11.02268 -10.92709 -10.88992 -10.66004 -10.63585 -10.35512 -10.32244 -10.05894 -9.44830 -9.17352 -8.78924 -7.99329 -6.20377 -4.27790 2.15110 2.45754 3.18005 3.22721 3.28952 3.31384 3.86986 3.99314 4.27733 4.33032 4.36310 4.55292 4.70488 4.81518 4.88029 4.99950 5.07930 5.15162 5.15825 5.18279 5.25384 5.34990 5.44208 5.48312 5.60791 5.67377 5.84272 5.85591 5.96873 6.14099 6.39526 7.21936 7.30561 7.32806 7.45021 7.59059 7.72353 7.91231 8.49684 8.70582 8.96085 9.38683 10.89780 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.045203 B = 0.002562 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.275485 B =10925.583445 C =11226.554307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.707 5.707 11 C 0.500 3.500 12 O -0.535 6.535 13 C 0.047 3.953 14 O -0.328 6.328 15 C 0.464 3.536 16 O -0.510 6.510 17 C -0.076 4.076 18 C -0.100 4.100 19 C -0.111 4.111 20 C 0.101 3.899 21 O -0.563 6.563 22 C -0.150 4.150 23 C -0.110 4.110 24 H 0.267 0.733 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.393 0.607 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.376 0.624 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.955 -24.408 -1.655 24.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.357 5.357 11 C 0.283 3.717 12 O -0.412 6.412 13 C -0.030 4.030 14 O -0.243 6.243 15 C 0.307 3.693 16 O -0.398 6.398 17 C -0.095 4.095 18 C -0.138 4.138 19 C -0.149 4.149 20 C 0.043 3.957 21 O -0.369 6.369 22 C -0.188 4.188 23 C -0.147 4.147 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.226 0.774 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.223 0.777 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.734 -24.284 -1.196 24.598 hybrid contribution 0.548 1.133 -0.358 1.309 sum 4.282 -23.150 -1.554 23.594 Atomic orbital electron populations 1.69973 1.06124 1.27410 1.48719 1.24952 0.94937 0.99500 0.94608 0.86388 0.79607 0.82502 0.78260 1.20417 1.20968 1.19715 1.21209 0.93337 0.90307 1.53478 0.91766 1.19174 0.88170 0.81550 0.98010 1.46370 1.11513 1.05379 1.72447 1.19897 0.89125 0.83990 0.78712 1.90701 1.16334 1.84569 1.49606 1.22856 0.94405 0.81248 1.04496 1.86568 1.40474 1.13966 1.83287 1.23829 0.86541 0.86795 0.72153 1.90656 1.15650 1.87960 1.45550 1.21093 0.98302 0.88076 1.02036 1.21360 0.96639 0.91723 1.04059 1.21561 0.99439 0.97800 0.96073 1.21828 0.90974 0.96554 0.86381 1.86540 1.38249 1.96227 1.15839 1.22255 0.98098 0.95174 1.03286 1.21454 0.98921 0.97849 0.96487 0.92369 0.95272 0.95256 0.77427 0.88602 0.88608 0.87412 0.91072 0.89978 0.90374 0.90706 0.92639 0.77677 0.91018 0.90499 0.89970 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.91 20.70 29.54 -169.99 -5.02 15.68 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 7 C -0.55 -14.63 9.28 -34.44 -0.32 -14.95 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.58 5.43 -5.19 -0.03 6.56 16 10 N -0.71 -14.72 5.55 -61.47 -0.34 -15.06 16 11 C 0.50 10.11 7.91 -10.99 -0.09 10.02 16 12 O -0.53 -13.09 16.50 -14.10 -0.23 -13.32 16 13 C 0.05 0.74 5.94 36.01 0.21 0.96 16 14 O -0.33 -5.26 9.66 -45.90 -0.44 -5.70 16 15 C 0.46 6.46 7.26 36.00 0.26 6.73 16 16 O -0.51 -8.05 15.73 -18.75 -0.29 -8.35 16 17 C -0.08 -0.78 2.63 -91.77 -0.24 -1.02 16 18 C -0.10 -0.95 4.35 -26.73 -0.12 -1.07 16 19 C -0.11 -0.79 5.66 -26.73 -0.15 -0.94 16 20 C 0.10 0.67 3.77 -26.73 -0.10 0.57 16 21 O -0.56 -4.36 11.97 -35.23 -0.42 -4.78 16 22 C -0.15 -0.99 5.64 -26.73 -0.15 -1.15 16 23 C -0.11 -1.02 4.99 -26.73 -0.13 -1.16 16 24 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.39 6.89 8.32 -40.82 -0.34 6.55 16 28 H 0.10 1.31 8.13 -51.93 -0.42 0.89 16 29 H 0.10 1.32 8.13 -51.93 -0.42 0.90 16 30 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.68 8.10 -51.92 -0.42 0.26 16 32 H 0.08 0.94 7.64 -51.93 -0.40 0.54 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 36 H 0.38 1.52 9.08 45.56 0.41 1.94 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 40 H 0.07 0.76 7.68 -51.93 -0.40 0.36 16 LS Contribution 338.11 15.07 5.10 5.10 Total: -1.00 -34.37 338.11 -7.20 -41.57 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.32 Total: 3.78 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -0.95 Total: 6.21 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.40 Total: -40.19 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -1.39 Total: -32.15 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.37 -7.20 -41.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795644066.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.425 kcal (2) G-P(sol) polarization free energy of solvation -34.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds