Wall clock time and date at job start Tue Mar 31 2020 05:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99816 * 2 1 4 4 H 1.48503 * 109.46714 * 270.00067 * 3 2 1 5 5 H 1.48496 * 109.47283 * 30.00117 * 3 2 1 6 6 H 1.48496 * 109.47251 * 150.00547 * 3 2 1 7 7 C 1.37870 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00549 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99804 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47129 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00079 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00046 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99931 * 180.02562 * 11 10 9 14 14 O 1.45204 * 109.47273 * 180.02562 * 13 11 10 15 15 C 1.34227 * 117.00307 * 179.97438 * 14 13 11 16 16 O 1.20826 * 119.99572 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00181 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.47408 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47201 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.46862 * 60.00295 * 19 18 17 21 21 O 1.42903 * 109.47256 * 60.00148 * 20 19 18 22 22 C 1.53001 * 109.47329 * 299.99879 * 20 19 18 23 23 C 1.52997 * 109.47050 * 60.00237 * 22 20 19 24 24 H 0.97005 * 119.99972 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46981 * 60.00837 * 9 7 2 26 26 H 1.08992 * 109.47507 * 300.00075 * 9 7 2 27 27 H 0.96999 * 119.99576 * 0.02562 * 10 9 7 28 28 H 1.08995 * 109.47729 * 59.99633 * 13 11 10 29 29 H 1.09001 * 109.47212 * 299.99608 * 13 11 10 30 30 H 1.09006 * 109.47347 * 300.00362 * 17 15 14 31 31 H 1.09009 * 109.46785 * 60.00103 * 18 17 15 32 32 H 1.08997 * 109.47329 * 300.00448 * 18 17 15 33 33 H 1.08997 * 109.47549 * 300.00564 * 19 18 17 34 34 H 1.08997 * 109.46932 * 180.02562 * 19 18 17 35 35 H 1.09008 * 109.47201 * 179.97438 * 20 19 18 36 36 H 0.96700 * 114.00311 * 180.02562 * 21 20 19 37 37 H 1.08999 * 109.47164 * 180.02562 * 22 20 19 38 38 H 1.08997 * 109.47124 * 299.99757 * 22 20 19 39 39 H 1.08997 * 109.46932 * 180.02562 * 23 22 20 40 40 H 1.08997 * 109.47549 * 59.99780 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7539 -4.8833 -0.0025 12 8 0.5615 -5.1050 -0.0026 13 6 2.7332 -6.0287 -0.0032 14 8 2.0072 -7.2863 -0.0045 15 6 2.7383 -8.4120 -0.0058 16 8 3.9449 -8.3486 -0.0063 17 6 2.0542 -9.7547 -0.0067 18 6 3.1079 -10.8640 -0.0087 19 6 2.4134 -12.2272 -0.0090 20 6 1.5378 -12.3532 -1.2573 21 8 2.3530 -12.2338 -2.4250 22 6 0.4841 -11.2439 -1.2554 23 6 1.1786 -9.8807 -1.2551 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 3.1567 -3.4353 -0.0021 28 1 3.3599 -5.9715 0.8867 29 1 3.3598 -5.9705 -0.8932 30 1 1.4317 -9.8460 0.8835 31 1 3.7315 -10.7744 0.8809 32 1 3.7300 -10.7726 -0.8991 33 1 1.7915 -12.3184 0.8816 34 1 3.1641 -13.0174 -0.0100 35 1 1.0433 -13.3246 -1.2578 36 1 1.8630 -12.3038 -3.2557 37 1 -0.1400 -11.3340 -2.1445 38 1 -0.1378 -11.3351 -0.3648 39 1 0.4279 -9.0905 -1.2533 40 1 1.8005 -9.7896 -2.1457 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795644066.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:17 Heat of formation + Delta-G solvation = -222.347453 kcal Electronic energy + Delta-G solvation = -22232.176857 eV Core-core repulsion = 18624.004703 eV Total energy + Delta-G solvation = -3608.172154 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -41.96488 -40.55201 -39.67839 -37.61822 -36.19901 -35.99406 -34.43125 -31.90850 -31.46392 -30.56138 -28.49587 -25.21939 -24.36953 -23.68718 -21.90910 -21.66221 -20.68644 -19.26200 -18.81383 -18.01021 -17.90595 -17.55322 -17.14029 -16.97501 -16.57402 -16.15471 -15.86290 -15.55816 -14.80640 -14.60539 -14.37597 -14.17692 -14.05356 -13.84944 -13.69640 -13.24438 -13.20062 -13.01373 -12.94381 -12.72663 -12.34743 -12.24147 -12.00416 -11.92421 -11.61142 -11.57690 -11.50953 -11.02300 -10.93079 -10.82917 -10.60893 -9.94955 -8.30714 -6.47366 1.04971 1.25556 1.44102 1.45517 1.52861 1.57104 2.33012 2.55462 3.04550 3.42154 3.49206 3.66543 3.69795 3.82945 3.98758 4.02094 4.08870 4.17482 4.20880 4.38661 4.40649 4.54559 4.79629 4.91534 5.03499 5.06044 5.09932 5.16562 5.19862 5.20464 5.28846 5.30108 5.40248 5.45874 5.61528 5.80806 6.55838 6.61694 6.76585 6.98672 7.18827 7.33620 8.81450 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.045203 B = 0.002562 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.275485 B =10925.583445 C =11226.554307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.557 4.557 8 H 0.085 0.915 9 C 0.266 3.734 10 N -0.699 5.699 11 C 0.500 3.500 12 O -0.582 6.582 13 C 0.058 3.942 14 O -0.346 6.346 15 C 0.464 3.536 16 O -0.530 6.530 17 C -0.073 4.073 18 C -0.095 4.095 19 C -0.111 4.111 20 C 0.101 3.899 21 O -0.585 6.585 22 C -0.144 4.144 23 C -0.108 4.108 24 H 0.269 0.731 25 H -0.007 1.007 26 H -0.007 1.007 27 H 0.412 0.588 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.390 0.610 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.339 -25.336 -1.444 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.180 1.180 7 C -0.595 4.595 8 H 0.103 0.897 9 C 0.144 3.856 10 N -0.350 5.350 11 C 0.286 3.714 12 O -0.462 6.462 13 C -0.019 4.019 14 O -0.261 6.261 15 C 0.308 3.692 16 O -0.419 6.419 17 C -0.092 4.092 18 C -0.132 4.132 19 C -0.148 4.148 20 C 0.042 3.958 21 O -0.393 6.393 22 C -0.182 4.182 23 C -0.145 4.145 24 H 0.078 0.922 25 H 0.011 0.989 26 H 0.011 0.989 27 H 0.248 0.752 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.146 0.854 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.239 0.761 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.165 -25.245 -0.995 25.787 hybrid contribution 0.098 1.356 -0.442 1.430 sum 5.263 -23.889 -1.438 24.504 Atomic orbital electron populations 1.70130 1.08231 1.28651 1.49825 1.26048 0.95784 1.03863 0.93817 0.85151 0.78477 0.76966 0.78593 1.19622 1.20946 1.17968 1.21605 0.94405 0.90409 1.53085 0.89658 1.18636 0.88560 0.83760 0.94623 1.46055 1.11729 1.04747 1.72511 1.20654 0.89274 0.84673 0.76786 1.90677 1.18821 1.85294 1.51453 1.22724 0.92700 0.79612 1.06854 1.86577 1.41402 1.14493 1.83667 1.24591 0.86447 0.87089 0.71058 1.90641 1.16551 1.88121 1.46623 1.21285 0.98681 0.85957 1.03308 1.21305 0.96288 0.92951 1.02695 1.21624 0.99823 0.95960 0.97422 1.21914 0.90651 0.97426 0.85775 1.86510 1.39482 1.96335 1.16991 1.22251 0.98139 0.93223 1.04588 1.21427 0.98290 0.99342 0.95465 0.92168 0.98945 0.98888 0.75163 0.85994 0.86243 0.85432 0.91412 0.92365 0.88276 0.90482 0.90448 0.76057 0.89753 0.89212 0.91482 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.59 13.29 21.44 0.28 -55.30 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.99 41.95 29.54 68.60 2.03 43.98 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 7 C -0.56 -29.93 9.28 25.60 0.24 -29.69 16 8 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 9 C 0.27 14.46 5.43 85.63 0.46 14.92 16 10 N -0.70 -29.23 5.55 -466.79 -2.59 -31.82 16 11 C 0.50 20.39 7.91 87.66 0.69 21.08 16 12 O -0.58 -29.44 16.50 15.78 0.26 -29.18 16 13 C 0.06 1.74 5.94 71.24 0.42 2.17 16 14 O -0.35 -10.91 9.66 -45.04 -0.43 -11.34 16 15 C 0.46 12.59 7.26 71.23 0.52 13.10 16 16 O -0.53 -16.30 15.73 21.96 0.35 -15.95 16 17 C -0.07 -1.43 2.63 -11.54 -0.03 -1.46 16 18 C -0.09 -1.69 4.35 30.59 0.13 -1.56 16 19 C -0.11 -1.32 5.66 30.59 0.17 -1.15 16 20 C 0.10 1.08 3.77 30.59 0.12 1.20 16 21 O -0.59 -8.21 11.97 -148.98 -1.78 -10.00 16 22 C -0.14 -1.59 5.64 30.59 0.17 -1.42 16 23 C -0.11 -1.92 4.99 30.60 0.15 -1.77 16 24 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 25 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 26 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 27 H 0.41 13.95 8.32 -92.71 -0.77 13.18 16 28 H 0.12 3.08 8.13 -2.39 -0.02 3.06 16 29 H 0.12 3.07 8.13 -2.39 -0.02 3.05 16 30 H 0.13 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.07 1.23 8.10 -2.38 -0.02 1.21 16 32 H 0.06 1.32 7.64 -2.39 -0.02 1.30 16 33 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 36 H 0.39 2.60 9.08 -74.06 -0.67 1.92 16 37 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 1.40 8.11 -2.39 -0.02 1.38 16 40 H 0.06 1.26 7.68 -2.39 -0.02 1.24 16 Total: -1.00 -76.48 338.11 1.24 -75.24 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -0.39 Total: 18.22 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: 3.51 Total: 16.15 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -2.30 Total: -87.12 kcal Atomic # 8 Polarization: -64.86 SS G_CDS: -1.61 Total: -66.47 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -76.48 1.24 -75.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795644066.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.107 kcal (2) G-P(sol) polarization free energy of solvation -76.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds