Wall clock time and date at job start Tue Mar 31 2020 05:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00053 * 2 1 4 4 H 1.48499 * 109.47105 * 269.99583 * 3 2 1 5 5 H 1.48499 * 109.47427 * 29.99831 * 3 2 1 6 6 H 1.48508 * 109.47164 * 149.99864 * 3 2 1 7 7 C 1.37886 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99853 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 7 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 9 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 9 14 14 O 1.45188 * 109.47407 * 180.02562 * 13 11 10 15 15 C 1.34232 * 117.00097 * 179.97438 * 14 13 11 16 16 O 1.20819 * 119.99782 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00006 * 180.02562 * 15 14 13 18 18 C 1.52999 * 109.47176 * 180.02562 * 17 15 14 19 19 H 1.09006 * 109.51957 * 305.12417 * 18 17 15 20 20 C 1.53178 * 109.52534 * 185.00384 * 18 17 15 21 21 C 1.53176 * 109.03759 * 183.11310 * 20 18 17 22 22 C 1.53089 * 109.16434 * 56.97572 * 21 20 18 23 23 O 1.42905 * 109.41655 * 302.39241 * 22 21 20 24 24 C 1.42896 * 114.09680 * 61.15825 * 23 22 21 25 25 H 0.96999 * 120.00067 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 27 27 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 28 28 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 29 29 H 1.08998 * 109.46954 * 300.00581 * 13 11 10 30 30 H 1.09002 * 109.46946 * 59.99717 * 13 11 10 31 31 H 1.09006 * 109.47111 * 300.00283 * 17 15 14 32 32 H 1.08996 * 109.46995 * 60.00513 * 17 15 14 33 33 H 1.08998 * 109.53831 * 302.97736 * 20 18 17 34 34 H 1.08997 * 109.54767 * 63.15057 * 20 18 17 35 35 H 1.08995 * 109.52153 * 176.88491 * 21 20 18 36 36 H 1.08996 * 109.52147 * 297.00690 * 21 20 18 37 37 H 1.09004 * 109.47882 * 62.37520 * 22 21 20 38 38 H 1.09001 * 109.47928 * 182.40916 * 22 21 20 39 39 H 1.09000 * 109.48574 * 178.86111 * 24 23 22 40 40 H 1.09001 * 109.48412 * 58.82771 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0062 12 8 0.5613 -5.1050 0.0061 13 6 2.7329 -6.0289 0.0125 14 8 2.0069 -7.2862 0.0172 15 6 2.7380 -8.4120 0.0226 16 8 3.9445 -8.3488 0.0238 17 6 2.0537 -9.7547 0.0271 18 6 3.1074 -10.8640 0.0335 19 1 3.7882 -10.7246 -0.8063 20 6 2.4174 -12.2262 -0.0879 21 6 3.4747 -13.3313 -0.0021 22 6 4.2477 -13.1864 1.3114 23 8 4.8388 -11.8868 1.3739 24 6 3.8947 -10.8145 1.3455 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8902 28 1 3.1566 -3.4355 0.0009 29 1 3.3604 -5.9753 -0.8771 30 1 3.3588 -5.9669 0.9027 31 1 1.4298 -9.8416 0.9167 32 1 1.4322 -9.8487 -0.8633 33 1 1.6995 -12.3448 0.7237 34 1 1.8995 -12.2887 -1.0449 35 1 2.9867 -14.3054 -0.0320 36 1 4.1630 -13.2428 -0.8426 37 1 3.5649 -13.3160 2.1511 38 1 5.0298 -13.9441 1.3583 39 1 4.4224 -9.8635 1.4171 40 1 3.2073 -10.9130 2.1858 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795904230.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:10 Heat of formation + Delta-G solvation = -188.015458 kcal Electronic energy + Delta-G solvation = -21917.509385 eV Core-core repulsion = 18310.825978 eV Total energy + Delta-G solvation = -3606.683407 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.86994 -39.56421 -38.68732 -36.52040 -34.79316 -34.27013 -32.50510 -32.41726 -29.60225 -28.07555 -26.51855 -25.35772 -23.45914 -22.54137 -20.98649 -20.33934 -19.95503 -17.81135 -17.50923 -17.02557 -16.47883 -16.27833 -16.20194 -15.45819 -15.24801 -15.12851 -14.75215 -14.58911 -14.30334 -13.60268 -13.35956 -13.00047 -12.92216 -12.85667 -12.39783 -12.20617 -12.00935 -11.78085 -11.60310 -11.39188 -11.26103 -11.03013 -10.93558 -10.76530 -10.69971 -10.38499 -10.35831 -9.76785 -9.45896 -9.20350 -8.79977 -8.01173 -6.21203 -4.28673 2.05371 2.37883 3.15178 3.22191 3.28478 3.30837 3.59243 3.91957 4.26523 4.31105 4.37504 4.41648 4.53664 4.66632 4.82165 4.96595 5.06648 5.09865 5.14868 5.16083 5.21541 5.22984 5.26335 5.32160 5.41378 5.49605 5.58243 5.63671 5.81802 5.94132 6.34158 6.91556 7.20366 7.28418 7.43648 7.56472 7.64439 7.90162 8.47713 8.69155 8.94112 9.37734 10.88905 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.054327 B = 0.002327 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.269191 B =12029.036749 C =12371.330751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.499 3.501 12 O -0.535 6.535 13 C 0.048 3.952 14 O -0.329 6.329 15 C 0.459 3.541 16 O -0.508 6.508 17 C -0.108 4.108 18 C -0.112 4.112 19 H 0.091 0.909 20 C -0.118 4.118 21 C -0.155 4.155 22 C 0.056 3.944 23 O -0.378 6.378 24 C 0.059 3.941 25 H 0.267 0.733 26 H 0.029 0.971 27 H 0.030 0.970 28 H 0.393 0.607 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.855 -25.018 0.832 25.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.357 5.357 11 C 0.282 3.718 12 O -0.412 6.412 13 C -0.029 4.029 14 O -0.244 6.244 15 C 0.302 3.698 16 O -0.397 6.397 17 C -0.146 4.146 18 C -0.131 4.131 19 H 0.110 0.890 20 C -0.156 4.156 21 C -0.193 4.193 22 C -0.021 4.021 23 O -0.297 6.297 24 C -0.018 4.018 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.226 0.774 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.128 0.872 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.357 -24.934 0.849 25.746 hybrid contribution 0.655 1.094 -0.094 1.278 sum 7.012 -23.840 0.755 24.862 Atomic orbital electron populations 1.69972 1.06119 1.27426 1.48660 1.24961 0.94948 0.99519 0.94602 0.86382 0.79602 0.82476 0.78260 1.20419 1.20972 1.19709 1.21208 0.93337 0.90292 1.53537 0.91753 1.19178 0.88167 0.81545 0.98027 1.46373 1.11535 1.05373 1.72385 1.19903 0.89127 0.84011 0.78761 1.90708 1.16342 1.84565 1.49622 1.22869 0.94376 0.81077 1.04600 1.86569 1.40513 1.14080 1.83227 1.23802 0.86659 0.86961 0.72393 1.90655 1.15533 1.87888 1.45583 1.21411 0.99216 0.87339 1.06624 1.21675 0.96869 0.93421 1.01163 0.89039 1.21646 0.97753 0.93294 1.02873 1.22177 0.98646 0.99108 0.99369 1.22606 0.97735 0.85636 0.96133 1.87990 1.33275 1.13987 1.94435 1.22882 0.92541 0.91529 0.94830 0.92361 0.95260 0.95244 0.77404 0.88501 0.88481 0.87277 0.86959 0.91371 0.90934 0.90717 0.90883 0.93243 0.88990 0.87204 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.75 13.29 55.43 0.74 -25.01 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 7 C -0.55 -14.56 9.28 -34.44 -0.32 -14.88 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.53 5.43 -5.19 -0.03 6.51 16 10 N -0.71 -14.51 5.55 -61.47 -0.34 -14.85 16 11 C 0.50 9.90 7.91 -10.98 -0.09 9.81 16 12 O -0.53 -12.96 16.50 -14.11 -0.23 -13.20 16 13 C 0.05 0.72 5.94 36.01 0.21 0.93 16 14 O -0.33 -4.97 9.75 -45.91 -0.45 -5.42 16 15 C 0.46 5.68 7.69 36.01 0.28 5.96 16 16 O -0.51 -7.14 13.74 -18.74 -0.26 -7.40 16 17 C -0.11 -0.91 5.29 -27.88 -0.15 -1.06 16 18 C -0.11 -0.94 2.03 -90.48 -0.18 -1.12 16 19 H 0.09 0.89 7.95 -51.93 -0.41 0.48 16 20 C -0.12 -0.73 5.31 -26.55 -0.14 -0.88 16 21 C -0.16 -0.95 6.14 -26.59 -0.16 -1.11 16 22 C 0.06 0.40 6.84 37.20 0.25 0.66 16 23 O -0.38 -4.05 10.77 -35.23 -0.38 -4.43 16 24 C 0.06 0.57 5.84 37.21 0.22 0.79 16 25 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.39 6.77 8.32 -40.82 -0.34 6.43 16 29 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 30 H 0.10 1.25 8.13 -51.93 -0.42 0.83 16 31 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.11 1.27 6.04 -51.93 -0.31 0.96 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 337.68 15.07 5.09 5.09 Total: -1.00 -33.63 337.68 -7.15 -40.79 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.10 Total: 1.56 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -0.20 Total: 7.27 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.40 Total: -39.86 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -1.32 Total: -30.44 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.63 -7.15 -40.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795904230.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.229 kcal (2) G-P(sol) polarization free energy of solvation -33.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds