Wall clock time and date at job start Tue Mar 31 2020 05:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00053 * 2 1 4 4 H 1.48499 * 109.47105 * 269.99583 * 3 2 1 5 5 H 1.48499 * 109.47427 * 29.99831 * 3 2 1 6 6 H 1.48508 * 109.47164 * 149.99864 * 3 2 1 7 7 C 1.37886 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99853 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 7 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 9 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 9 14 14 O 1.45188 * 109.47407 * 180.02562 * 13 11 10 15 15 C 1.34232 * 117.00097 * 179.97438 * 14 13 11 16 16 O 1.20819 * 119.99782 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00006 * 180.02562 * 15 14 13 18 18 C 1.52999 * 109.47176 * 180.02562 * 17 15 14 19 19 H 1.09006 * 109.51957 * 305.12417 * 18 17 15 20 20 C 1.53178 * 109.52534 * 185.00384 * 18 17 15 21 21 C 1.53176 * 109.03759 * 183.11310 * 20 18 17 22 22 C 1.53089 * 109.16434 * 56.97572 * 21 20 18 23 23 O 1.42905 * 109.41655 * 302.39241 * 22 21 20 24 24 C 1.42896 * 114.09680 * 61.15825 * 23 22 21 25 25 H 0.96999 * 120.00067 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 27 27 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 28 28 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 29 29 H 1.08998 * 109.46954 * 300.00581 * 13 11 10 30 30 H 1.09002 * 109.46946 * 59.99717 * 13 11 10 31 31 H 1.09006 * 109.47111 * 300.00283 * 17 15 14 32 32 H 1.08996 * 109.46995 * 60.00513 * 17 15 14 33 33 H 1.08998 * 109.53831 * 302.97736 * 20 18 17 34 34 H 1.08997 * 109.54767 * 63.15057 * 20 18 17 35 35 H 1.08995 * 109.52153 * 176.88491 * 21 20 18 36 36 H 1.08996 * 109.52147 * 297.00690 * 21 20 18 37 37 H 1.09004 * 109.47882 * 62.37520 * 22 21 20 38 38 H 1.09001 * 109.47928 * 182.40916 * 22 21 20 39 39 H 1.09000 * 109.48574 * 178.86111 * 24 23 22 40 40 H 1.09001 * 109.48412 * 58.82771 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0062 12 8 0.5613 -5.1050 0.0061 13 6 2.7329 -6.0289 0.0125 14 8 2.0069 -7.2862 0.0172 15 6 2.7380 -8.4120 0.0226 16 8 3.9445 -8.3488 0.0238 17 6 2.0537 -9.7547 0.0271 18 6 3.1074 -10.8640 0.0335 19 1 3.7882 -10.7246 -0.8063 20 6 2.4174 -12.2262 -0.0879 21 6 3.4747 -13.3313 -0.0021 22 6 4.2477 -13.1864 1.3114 23 8 4.8388 -11.8868 1.3739 24 6 3.8947 -10.8145 1.3455 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8902 28 1 3.1566 -3.4355 0.0009 29 1 3.3604 -5.9753 -0.8771 30 1 3.3588 -5.9669 0.9027 31 1 1.4298 -9.8416 0.9167 32 1 1.4322 -9.8487 -0.8633 33 1 1.6995 -12.3448 0.7237 34 1 1.8995 -12.2887 -1.0449 35 1 2.9867 -14.3054 -0.0320 36 1 4.1630 -13.2428 -0.8426 37 1 3.5649 -13.3160 2.1511 38 1 5.0298 -13.9441 1.3583 39 1 4.4224 -9.8635 1.4171 40 1 3.2073 -10.9130 2.1858 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795904230.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:09 Heat of formation + Delta-G solvation = -211.326258 kcal Electronic energy + Delta-G solvation = -21918.520217 eV Core-core repulsion = 18310.825978 eV Total energy + Delta-G solvation = -3607.694239 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.88368 -40.58815 -40.02018 -37.64099 -36.19180 -35.48988 -34.42471 -33.08025 -30.98672 -29.24717 -28.04703 -25.96755 -24.77129 -23.91454 -21.86551 -21.64714 -20.98198 -19.23435 -18.78584 -18.01327 -17.84375 -17.21048 -17.10719 -16.90833 -16.83429 -16.25295 -15.94539 -15.69397 -15.28761 -14.78951 -14.58515 -14.27901 -14.00747 -13.83771 -13.62356 -13.54902 -13.37537 -12.94696 -12.82037 -12.72223 -12.23802 -12.16229 -12.02931 -11.93841 -11.84941 -11.51066 -11.44708 -11.15447 -10.90613 -10.82492 -10.39921 -9.94137 -8.30374 -6.46920 1.09588 1.28193 1.44492 1.45792 1.54436 1.57361 2.33688 2.57619 2.96228 3.04810 3.53511 3.68245 3.75035 3.77318 3.95275 4.04498 4.05358 4.07403 4.25341 4.33289 4.49867 4.57544 4.63809 4.75104 4.82717 4.96012 5.04383 5.06809 5.10947 5.20438 5.20956 5.35257 5.40802 5.42417 5.62269 5.81328 6.28104 6.59424 6.62715 6.77982 7.19560 7.34676 8.81678 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.054327 B = 0.002327 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.269191 B =12029.036749 C =12371.330751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.699 5.699 11 C 0.499 3.501 12 O -0.584 6.584 13 C 0.060 3.940 14 O -0.349 6.349 15 C 0.459 3.541 16 O -0.527 6.527 17 C -0.103 4.103 18 C -0.106 4.106 19 H 0.073 0.927 20 C -0.115 4.115 21 C -0.153 4.153 22 C 0.047 3.953 23 O -0.407 6.407 24 C 0.057 3.943 25 H 0.269 0.731 26 H -0.008 1.008 27 H -0.007 1.007 28 H 0.412 0.588 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.136 -26.005 0.823 27.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.180 1.180 7 C -0.595 4.595 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.351 5.351 11 C 0.285 3.715 12 O -0.464 6.464 13 C -0.017 4.017 14 O -0.265 6.265 15 C 0.303 3.697 16 O -0.416 6.416 17 C -0.140 4.140 18 C -0.125 4.125 19 H 0.091 0.909 20 C -0.153 4.153 21 C -0.191 4.191 22 C -0.029 4.029 23 O -0.326 6.326 24 C -0.020 4.020 25 H 0.078 0.922 26 H 0.010 0.990 27 H 0.011 0.989 28 H 0.249 0.751 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.694 -25.957 0.838 27.087 hybrid contribution 0.257 1.291 -0.077 1.318 sum 7.951 -24.667 0.762 25.928 Atomic orbital electron populations 1.70129 1.08212 1.28634 1.49807 1.26059 0.95800 1.03880 0.93853 0.85147 0.78469 0.76964 0.78577 1.19634 1.20996 1.17969 1.21610 0.94411 0.90416 1.53065 0.89640 1.18628 0.88573 0.83798 0.94605 1.46060 1.11720 1.04803 1.72516 1.20725 0.89330 0.84727 0.76733 1.90682 1.18910 1.85317 1.51510 1.22700 0.92532 0.79495 1.06951 1.86575 1.41534 1.14604 1.83783 1.24578 0.86569 0.87167 0.71347 1.90655 1.16457 1.87990 1.46490 1.21580 0.99273 0.84620 1.08499 1.21606 0.96546 0.94770 0.99604 0.90875 1.21668 0.97813 0.91619 1.04173 1.22174 0.98454 1.00209 0.98247 1.22838 0.98478 0.84279 0.97269 1.87942 1.34577 1.15409 1.94705 1.22838 0.92458 0.90510 0.96173 0.92188 0.98955 0.98924 0.75148 0.86043 0.85977 0.85271 0.84938 0.89981 0.89625 0.88577 0.91840 0.92128 0.88084 0.89677 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.37 13.29 21.45 0.28 -55.09 16 2 C 0.00 0.21 5.46 84.66 0.46 0.68 16 3 Si 0.99 41.83 29.54 68.60 2.03 43.85 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.56 -29.77 9.28 25.60 0.24 -29.54 16 8 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 9 C 0.27 14.35 5.43 85.63 0.46 14.82 16 10 N -0.70 -28.83 5.55 -466.79 -2.59 -31.42 16 11 C 0.50 19.87 7.91 87.66 0.69 20.56 16 12 O -0.58 -29.12 16.50 15.76 0.26 -28.86 16 13 C 0.06 1.71 5.94 71.24 0.42 2.13 16 14 O -0.35 -10.16 9.75 -45.09 -0.44 -10.60 16 15 C 0.46 10.76 7.69 71.24 0.55 11.31 16 16 O -0.53 -14.31 13.74 21.98 0.30 -14.01 16 17 C -0.10 -1.51 5.29 29.85 0.16 -1.35 16 18 C -0.11 -1.61 2.03 -10.70 -0.02 -1.63 16 19 H 0.07 1.38 7.95 -2.38 -0.02 1.36 16 20 C -0.12 -1.12 5.31 30.71 0.16 -0.96 16 21 C -0.15 -1.54 6.14 30.68 0.19 -1.35 16 22 C 0.05 0.61 6.84 72.01 0.49 1.10 16 23 O -0.41 -8.47 10.77 -148.98 -1.60 -10.08 16 24 C 0.06 1.06 5.84 72.01 0.42 1.48 16 25 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 26 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 27 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H 0.41 13.70 8.32 -92.71 -0.77 12.92 16 29 H 0.12 2.89 8.13 -2.39 -0.02 2.87 16 30 H 0.12 2.89 8.13 -2.39 -0.02 2.87 16 31 H 0.13 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 38 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.09 1.98 6.04 -2.39 -0.01 1.97 16 40 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -75.52 337.68 2.74 -72.78 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.27 Total: 16.16 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: 4.23 Total: 17.25 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -2.30 Total: -86.50 kcal Atomic # 8 Polarization: -62.06 SS G_CDS: -1.48 Total: -63.54 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -75.52 2.74 -72.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795904230.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.551 kcal (2) G-P(sol) polarization free energy of solvation -75.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds