Wall clock time and date at job start Tue Mar 31 2020 05:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86793 * 120.00218 * 2 1 4 4 H 1.48502 * 109.47520 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47208 * 299.99674 * 3 2 1 6 6 H 1.48505 * 109.47262 * 59.99941 * 3 2 1 7 7 C 1.37879 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99913 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00172 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47409 * 179.97438 * 9 7 2 11 11 C 1.34772 * 120.00368 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99742 * 359.97438 * 11 10 9 13 13 C 1.50702 * 120.00411 * 180.02562 * 11 10 9 14 14 O 1.45196 * 109.47425 * 179.97438 * 13 11 10 15 15 C 1.34228 * 117.00027 * 180.02562 * 14 13 11 16 16 O 1.20818 * 119.99907 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99731 * 179.97438 * 15 14 13 18 18 C 1.53006 * 109.47052 * 179.97438 * 17 15 14 19 19 H 1.09000 * 109.52126 * 55.11998 * 18 17 15 20 20 C 1.53175 * 109.52386 * 175.31406 * 18 17 15 21 21 C 1.53180 * 109.03606 * 176.88917 * 20 18 17 22 22 C 1.53098 * 109.16075 * 303.01560 * 21 20 18 23 23 O 1.42905 * 109.41155 * 57.61062 * 22 21 20 24 24 C 1.42905 * 114.09831 * 298.83847 * 23 22 21 25 25 H 0.97006 * 120.00052 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46993 * 60.00056 * 9 7 2 27 27 H 1.08997 * 109.47179 * 300.00314 * 9 7 2 28 28 H 0.96998 * 119.99797 * 0.02562 * 10 9 7 29 29 H 1.08997 * 109.47242 * 59.99286 * 13 11 10 30 30 H 1.09001 * 109.46417 * 299.99496 * 13 11 10 31 31 H 1.08996 * 109.47434 * 59.99716 * 17 15 14 32 32 H 1.09001 * 109.46912 * 299.99370 * 17 15 14 33 33 H 1.09005 * 109.54265 * 296.75204 * 20 18 17 34 34 H 1.08996 * 109.54473 * 56.92710 * 20 18 17 35 35 H 1.08996 * 109.52502 * 62.92172 * 21 20 18 36 36 H 1.08995 * 109.52068 * 183.05420 * 21 20 18 37 37 H 1.09000 * 109.48092 * 297.63128 * 22 21 20 38 38 H 1.08993 * 109.47885 * 177.58982 * 22 21 20 39 39 H 1.08997 * 109.47832 * 181.14188 * 24 23 22 40 40 H 1.08999 * 109.48253 * 301.16514 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0000 12 8 0.5612 -5.1050 0.0000 13 6 2.7329 -6.0289 0.0006 14 8 2.0069 -7.2863 0.0005 15 6 2.7379 -8.4121 0.0015 16 8 3.9444 -8.3488 0.0020 17 6 2.0537 -9.7547 0.0020 18 6 3.1074 -10.8641 0.0025 19 1 3.7842 -10.7233 0.8453 20 6 2.4167 -12.2262 0.1210 21 6 3.4744 -13.3313 0.0422 22 6 4.2547 -13.1876 -1.2672 23 8 4.8461 -11.8880 -1.3274 24 6 3.9018 -10.8156 -1.3052 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8902 28 1 3.1565 -3.4355 0.0009 29 1 3.3589 -5.9713 0.8910 30 1 3.3601 -5.9710 -0.8890 31 1 1.4312 -9.8457 -0.8881 32 1 1.4306 -9.8446 0.8919 33 1 1.8947 -12.2885 1.0759 34 1 1.7021 -12.3447 -0.6935 35 1 4.1587 -13.2415 0.8858 36 1 2.9863 -14.3054 0.0712 37 1 3.5767 -13.3178 -2.1106 38 1 5.0371 -13.9452 -1.3091 39 1 4.4301 -9.8647 -1.3746 40 1 3.2193 -10.9147 -2.1493 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795904238.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:13 Heat of formation + Delta-G solvation = -187.986112 kcal Electronic energy + Delta-G solvation = -21918.824893 eV Core-core repulsion = 18312.142759 eV Total energy + Delta-G solvation = -3606.682134 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.87186 -39.56272 -38.68707 -36.52136 -34.79223 -34.27094 -32.50388 -32.41899 -29.60317 -28.07614 -26.52016 -25.35699 -23.45900 -22.54336 -20.98721 -20.33979 -19.95534 -17.81185 -17.51004 -17.02586 -16.47908 -16.28123 -16.19937 -15.46070 -15.24768 -15.13052 -14.75107 -14.58909 -14.30129 -13.60271 -13.35869 -12.99892 -12.92197 -12.85752 -12.39843 -12.20586 -12.01766 -11.78189 -11.60207 -11.39349 -11.26298 -11.00557 -10.95858 -10.76669 -10.70153 -10.38020 -10.36085 -9.76639 -9.44178 -9.20424 -8.80652 -8.01297 -6.21505 -4.28861 2.05291 2.37832 3.15116 3.21284 3.28578 3.31605 3.59358 3.91942 4.26546 4.31014 4.37450 4.41708 4.53674 4.66633 4.82235 4.96618 5.06753 5.09831 5.14735 5.16032 5.21516 5.23007 5.26364 5.32116 5.41469 5.49674 5.58247 5.63681 5.81954 5.94175 6.34201 6.91638 7.20331 7.28390 7.43507 7.56562 7.64404 7.89940 8.47671 8.69173 8.94105 9.37643 10.88665 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.054359 B = 0.002328 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.969134 B =12026.774972 C =12370.087631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.499 3.501 12 O -0.535 6.535 13 C 0.048 3.952 14 O -0.329 6.329 15 C 0.459 3.541 16 O -0.508 6.508 17 C -0.108 4.108 18 C -0.112 4.112 19 H 0.091 0.909 20 C -0.118 4.118 21 C -0.155 4.155 22 C 0.056 3.944 23 O -0.379 6.379 24 C 0.058 3.942 25 H 0.266 0.734 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.393 0.607 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.870 -25.024 -0.754 25.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.130 3.870 10 N -0.357 5.357 11 C 0.282 3.718 12 O -0.412 6.412 13 C -0.029 4.029 14 O -0.244 6.244 15 C 0.302 3.698 16 O -0.397 6.397 17 C -0.146 4.146 18 C -0.131 4.131 19 H 0.110 0.890 20 C -0.156 4.156 21 C -0.193 4.193 22 C -0.021 4.021 23 O -0.297 6.297 24 C -0.018 4.018 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.226 0.774 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.128 0.872 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.377 -24.942 -0.767 25.755 hybrid contribution 0.643 1.097 0.084 1.274 sum 7.020 -23.845 -0.683 24.866 Atomic orbital electron populations 1.69982 1.06121 1.27315 1.48758 1.24959 0.94948 0.99533 0.94612 0.86330 0.79819 0.82797 0.77784 1.19596 1.20755 1.20763 1.21245 0.93375 0.90278 1.53404 0.91699 1.19184 0.88175 0.81561 0.98033 1.46371 1.11537 1.05372 1.72381 1.19903 0.89128 0.84011 0.78763 1.90710 1.16337 1.84570 1.49625 1.22870 0.94374 0.81073 1.04602 1.86569 1.40513 1.14080 1.83224 1.23800 0.86658 0.86961 0.72391 1.90653 1.15535 1.87884 1.45588 1.21412 0.99218 0.87338 1.06625 1.21674 0.96829 0.93422 1.01197 0.89044 1.21646 0.97747 0.93291 1.02879 1.22180 0.98609 0.99110 0.99403 1.22605 0.97705 0.85642 0.96162 1.87992 1.33230 1.13988 1.94480 1.22891 0.92523 0.91541 0.94857 0.92416 0.95252 0.95243 0.77402 0.88494 0.88482 0.87278 0.86958 0.90945 0.91356 0.90887 0.90711 0.93247 0.88993 0.87168 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.74 13.29 55.43 0.74 -25.01 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.54 -14.54 9.28 -34.44 -0.32 -14.86 16 8 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 9 C 0.25 6.52 5.43 -5.19 -0.03 6.49 16 10 N -0.71 -14.50 5.55 -61.47 -0.34 -14.84 16 11 C 0.50 9.90 7.91 -10.99 -0.09 9.81 16 12 O -0.53 -12.96 16.50 -14.11 -0.23 -13.20 16 13 C 0.05 0.72 5.94 36.01 0.21 0.93 16 14 O -0.33 -4.97 9.75 -45.90 -0.45 -5.42 16 15 C 0.46 5.68 7.69 36.00 0.28 5.96 16 16 O -0.51 -7.13 13.72 -18.74 -0.26 -7.39 16 17 C -0.11 -0.91 5.29 -27.88 -0.15 -1.06 16 18 C -0.11 -0.94 2.04 -90.48 -0.18 -1.12 16 19 H 0.09 0.89 7.96 -51.93 -0.41 0.48 16 20 C -0.12 -0.73 5.31 -26.55 -0.14 -0.87 16 21 C -0.16 -0.95 6.14 -26.59 -0.16 -1.11 16 22 C 0.06 0.40 6.84 37.21 0.25 0.66 16 23 O -0.38 -4.05 10.77 -35.23 -0.38 -4.43 16 24 C 0.06 0.57 5.84 37.20 0.22 0.79 16 25 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.39 6.77 8.32 -40.82 -0.34 6.43 16 29 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 30 H 0.10 1.25 8.13 -51.93 -0.42 0.83 16 31 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.11 1.28 6.02 -51.93 -0.31 0.97 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 337.64 15.07 5.09 5.09 Total: -1.00 -33.65 337.64 -7.15 -40.80 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.09 Total: 1.54 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -0.21 Total: 7.26 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.40 Total: -39.85 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -1.32 Total: -30.44 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.65 -7.15 -40.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795904238.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.184 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds