Wall clock time and date at job start Tue Mar 31 2020 05:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86803 * 120.00374 * 2 1 4 4 H 1.48500 * 109.47159 * 270.00003 * 3 2 1 5 5 H 1.48499 * 109.47034 * 30.00040 * 3 2 1 6 6 H 1.48502 * 109.46897 * 150.00183 * 3 2 1 7 7 C 1.38954 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99878 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99951 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00312 * 180.02562 * 9 7 2 11 11 O 1.21287 * 119.99420 * 359.97438 * 10 9 7 12 12 C 1.50693 * 120.00088 * 179.97438 * 10 9 7 13 13 O 1.45200 * 109.47131 * 180.02562 * 12 10 9 14 14 C 1.34227 * 117.00214 * 180.02562 * 13 12 10 15 15 O 1.20820 * 119.99921 * 359.97438 * 14 13 12 16 16 C 1.50710 * 119.99943 * 180.02562 * 14 13 12 17 17 C 1.52999 * 109.46737 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.47486 * 55.00027 * 17 16 14 19 19 C 1.52997 * 109.47269 * 294.99692 * 17 16 14 20 20 C 1.53002 * 109.47415 * 180.02562 * 19 17 16 21 21 C 1.52996 * 109.46972 * 59.99860 * 20 19 17 22 22 C 1.52997 * 109.47165 * 300.00293 * 21 20 19 23 23 C 1.52999 * 109.47592 * 60.00300 * 22 21 20 24 24 H 1.09000 * 109.47160 * 59.99666 * 23 22 21 25 25 O 1.42895 * 109.47485 * 180.02562 * 23 22 21 26 26 H 0.97003 * 119.99689 * 359.97438 * 1 2 3 27 27 H 0.97009 * 120.00114 * 359.97438 * 9 7 2 28 28 H 1.09007 * 109.47205 * 60.00441 * 12 10 9 29 29 H 1.08997 * 109.47622 * 300.00319 * 12 10 9 30 30 H 1.08997 * 109.46768 * 59.99550 * 16 14 13 31 31 H 1.09001 * 109.46725 * 299.99635 * 16 14 13 32 32 H 1.09000 * 109.47140 * 300.00547 * 19 17 16 33 33 H 1.09001 * 109.47230 * 59.99691 * 19 17 16 34 34 H 1.08992 * 109.46974 * 180.02562 * 20 19 17 35 35 H 1.08996 * 109.46550 * 300.00288 * 20 19 17 36 36 H 1.09000 * 109.47054 * 60.00300 * 21 20 19 37 37 H 1.09001 * 109.46997 * 180.02562 * 21 20 19 38 38 H 1.09000 * 109.47140 * 299.99954 * 22 21 20 39 39 H 1.09002 * 109.47045 * 180.02562 * 22 21 20 40 40 H 0.96708 * 113.99472 * 299.99354 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0016 10 6 1.9971 -3.5579 -0.0016 11 8 3.2099 -3.5579 -0.0011 12 6 1.2435 -4.8629 -0.0022 13 8 2.1869 -5.9666 -0.0015 14 6 1.6738 -7.2070 -0.0024 15 8 0.4761 -7.3652 -0.0033 16 6 2.5919 -8.4022 -0.0011 17 6 1.7584 -9.6853 -0.0019 18 1 1.0672 -9.6691 -0.8445 19 6 0.9679 -9.7807 1.3045 20 6 0.1349 -11.0641 1.3040 21 6 1.0628 -12.2743 1.1798 22 6 1.8533 -12.1788 -0.1266 23 6 2.6864 -10.8955 -0.1262 24 1 3.3776 -10.9113 0.7165 25 8 3.4242 -10.8060 -1.3466 26 1 -0.4850 0.8401 0.0004 27 1 0.3532 -2.3906 -0.0016 28 1 0.6172 -4.9205 -0.8925 29 1 0.6164 -4.9209 0.8875 30 1 3.2193 -8.3774 0.8898 31 1 3.2220 -8.3772 -0.8902 32 1 1.6592 -9.7969 2.1471 33 1 0.3072 -8.9183 1.3933 34 1 -0.4285 -11.1319 2.2346 35 1 -0.5562 -11.0483 0.4614 36 1 1.7541 -12.2901 2.0224 37 1 0.4694 -13.1886 1.1790 38 1 1.1621 -12.1630 -0.9693 39 1 2.5141 -13.0412 -0.2153 40 1 4.0343 -11.5421 -1.4921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796133211.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:51 Heat of formation + Delta-G solvation = -199.020490 kcal Electronic energy + Delta-G solvation = -22373.481605 eV Core-core repulsion = 18766.320984 eV Total energy + Delta-G solvation = -3607.160621 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.55336 -39.24309 -38.06044 -36.17688 -35.67862 -33.97492 -32.97684 -31.35623 -29.97404 -28.75918 -27.04763 -24.55501 -23.01029 -22.16906 -20.44977 -20.04873 -19.53755 -18.04239 -17.54593 -17.42848 -16.41851 -16.24625 -15.68019 -15.33561 -14.86914 -14.56260 -14.39437 -14.11368 -13.95745 -13.74605 -13.29482 -13.07759 -12.78246 -12.42895 -12.31067 -11.94216 -11.77718 -11.62233 -11.58876 -11.24065 -11.11738 -10.94856 -10.71650 -10.59828 -10.42634 -10.33684 -10.28060 -10.13620 -9.93502 -9.58468 -8.48939 -8.06106 -6.48041 -3.89898 2.40827 2.80801 3.14829 3.24663 3.31117 3.76732 3.87656 4.13189 4.31081 4.40966 4.63342 4.78193 4.80107 4.94225 4.98739 5.06913 5.14083 5.17212 5.19237 5.30063 5.38034 5.48542 5.59109 5.65859 5.69394 5.73978 5.80681 5.87238 5.93077 5.95654 6.09145 6.16874 6.22319 6.75327 7.37571 7.49686 7.91227 8.02153 8.51264 9.09322 9.41882 9.92160 10.69327 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.044067 B = 0.002707 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.245185 B =10342.494561 C =10761.907447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.302 4.302 8 H 0.106 0.894 9 N -0.554 5.554 10 C 0.439 3.561 11 O -0.576 6.576 12 C 0.060 3.940 13 O -0.327 6.327 14 C 0.459 3.541 15 O -0.515 6.515 16 C -0.107 4.107 17 C -0.066 4.066 18 H 0.087 0.913 19 C -0.124 4.124 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.150 4.150 23 C 0.110 3.890 24 H 0.058 0.942 25 O -0.565 6.565 26 H 0.274 0.726 27 H 0.395 0.605 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.014 -23.612 1.672 23.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.191 5.191 10 C 0.223 3.777 11 O -0.460 6.460 12 C -0.017 4.017 13 O -0.242 6.242 14 C 0.302 3.698 15 O -0.404 6.404 16 C -0.145 4.145 17 C -0.084 4.084 18 H 0.106 0.894 19 C -0.161 4.161 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.188 4.188 23 C 0.051 3.949 24 H 0.076 0.924 25 O -0.371 6.371 26 H 0.083 0.917 27 H 0.228 0.772 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.121 0.879 31 H 0.133 0.867 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 0.991 -22.895 1.621 22.974 hybrid contribution -0.134 0.339 0.046 0.368 sum 0.857 -22.556 1.667 22.634 Atomic orbital electron populations 1.69616 1.06003 1.28444 1.49805 1.25312 0.95686 0.99857 0.96951 0.85798 0.79224 0.80431 0.78494 1.20264 1.20824 1.19282 1.19727 0.93475 0.81788 1.48100 0.87637 1.41713 1.09358 1.04105 1.63954 1.19355 0.88345 0.84126 0.85825 1.90559 1.13452 1.86818 1.55150 1.22718 0.90900 0.84718 1.03383 1.86563 1.40365 1.14348 1.82876 1.23796 0.88796 0.84943 0.72262 1.90604 1.17016 1.86726 1.46079 1.21389 0.97824 0.88870 1.06406 1.20966 0.96162 0.91107 1.00193 0.89441 1.21766 0.99214 0.99304 0.95800 1.21534 0.97934 0.94071 1.02172 1.21510 0.98468 0.98500 0.97104 1.22250 0.99865 0.97564 0.99113 1.21819 0.92248 0.94244 0.86586 0.92433 1.86547 1.58694 1.50575 1.41266 0.91653 0.77171 0.89620 0.89644 0.87878 0.86736 0.92056 0.89261 0.91734 0.91687 0.91872 0.91817 0.91008 0.91753 0.77602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.35 13.05 55.50 0.72 -23.63 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 8 H 0.11 3.08 7.16 -52.48 -0.38 2.70 16 9 N -0.55 -14.25 5.29 -10.96 -0.06 -14.31 16 10 C 0.44 10.83 7.86 -10.99 -0.09 10.74 16 11 O -0.58 -16.36 16.08 -14.11 -0.23 -16.58 16 12 C 0.06 1.19 5.94 36.00 0.21 1.40 16 13 O -0.33 -6.29 9.75 -45.89 -0.45 -6.74 16 14 C 0.46 7.33 7.68 36.01 0.28 7.60 16 15 O -0.51 -8.83 13.72 -18.75 -0.26 -9.08 16 16 C -0.11 -1.29 5.21 -27.88 -0.15 -1.43 16 17 C -0.07 -0.69 1.58 -90.62 -0.14 -0.84 16 18 H 0.09 1.07 7.96 -51.93 -0.41 0.66 16 19 C -0.12 -1.24 4.94 -26.73 -0.13 -1.37 16 20 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 21 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 22 C -0.15 -1.04 5.54 -26.73 -0.15 -1.19 16 23 C 0.11 0.90 2.90 -26.73 -0.08 0.83 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 O -0.57 -4.92 12.56 -35.23 -0.44 -5.37 16 26 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 28 H 0.09 1.55 8.13 -51.92 -0.42 1.12 16 29 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16 30 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.11 1.38 7.54 -51.93 -0.39 0.98 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 1.11 5.96 -51.93 -0.31 0.80 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.38 1.67 9.08 45.56 0.41 2.08 16 LS Contribution 333.44 15.07 5.02 5.02 Total: -1.00 -33.21 333.44 -6.69 -39.90 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.18 Total: 9.31 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -0.80 Total: 5.60 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.67 Total: -37.94 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -1.37 Total: -37.77 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.21 -6.69 -39.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796133211.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.124 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds