Wall clock time and date at job start Tue Mar 31 2020 05:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86803 * 120.00374 * 2 1 4 4 H 1.48500 * 109.47159 * 270.00003 * 3 2 1 5 5 H 1.48499 * 109.47034 * 30.00040 * 3 2 1 6 6 H 1.48502 * 109.46897 * 150.00183 * 3 2 1 7 7 C 1.38954 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99878 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99951 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00312 * 180.02562 * 9 7 2 11 11 O 1.21287 * 119.99420 * 359.97438 * 10 9 7 12 12 C 1.50693 * 120.00088 * 179.97438 * 10 9 7 13 13 O 1.45200 * 109.47131 * 180.02562 * 12 10 9 14 14 C 1.34227 * 117.00214 * 180.02562 * 13 12 10 15 15 O 1.20820 * 119.99921 * 359.97438 * 14 13 12 16 16 C 1.50710 * 119.99943 * 180.02562 * 14 13 12 17 17 C 1.52999 * 109.46737 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.47486 * 55.00027 * 17 16 14 19 19 C 1.52997 * 109.47269 * 294.99692 * 17 16 14 20 20 C 1.53002 * 109.47415 * 180.02562 * 19 17 16 21 21 C 1.52996 * 109.46972 * 59.99860 * 20 19 17 22 22 C 1.52997 * 109.47165 * 300.00293 * 21 20 19 23 23 C 1.52999 * 109.47592 * 60.00300 * 22 21 20 24 24 H 1.09000 * 109.47160 * 59.99666 * 23 22 21 25 25 O 1.42895 * 109.47485 * 180.02562 * 23 22 21 26 26 H 0.97003 * 119.99689 * 359.97438 * 1 2 3 27 27 H 0.97009 * 120.00114 * 359.97438 * 9 7 2 28 28 H 1.09007 * 109.47205 * 60.00441 * 12 10 9 29 29 H 1.08997 * 109.47622 * 300.00319 * 12 10 9 30 30 H 1.08997 * 109.46768 * 59.99550 * 16 14 13 31 31 H 1.09001 * 109.46725 * 299.99635 * 16 14 13 32 32 H 1.09000 * 109.47140 * 300.00547 * 19 17 16 33 33 H 1.09001 * 109.47230 * 59.99691 * 19 17 16 34 34 H 1.08992 * 109.46974 * 180.02562 * 20 19 17 35 35 H 1.08996 * 109.46550 * 300.00288 * 20 19 17 36 36 H 1.09000 * 109.47054 * 60.00300 * 21 20 19 37 37 H 1.09001 * 109.46997 * 180.02562 * 21 20 19 38 38 H 1.09000 * 109.47140 * 299.99954 * 22 21 20 39 39 H 1.09002 * 109.47045 * 180.02562 * 22 21 20 40 40 H 0.96708 * 113.99472 * 299.99354 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0016 10 6 1.9971 -3.5579 -0.0016 11 8 3.2099 -3.5579 -0.0011 12 6 1.2435 -4.8629 -0.0022 13 8 2.1869 -5.9666 -0.0015 14 6 1.6738 -7.2070 -0.0024 15 8 0.4761 -7.3652 -0.0033 16 6 2.5919 -8.4022 -0.0011 17 6 1.7584 -9.6853 -0.0019 18 1 1.0672 -9.6691 -0.8445 19 6 0.9679 -9.7807 1.3045 20 6 0.1349 -11.0641 1.3040 21 6 1.0628 -12.2743 1.1798 22 6 1.8533 -12.1788 -0.1266 23 6 2.6864 -10.8955 -0.1262 24 1 3.3776 -10.9113 0.7165 25 8 3.4242 -10.8060 -1.3466 26 1 -0.4850 0.8401 0.0004 27 1 0.3532 -2.3906 -0.0016 28 1 0.6172 -4.9205 -0.8925 29 1 0.6164 -4.9209 0.8875 30 1 3.2193 -8.3774 0.8898 31 1 3.2220 -8.3772 -0.8902 32 1 1.6592 -9.7969 2.1471 33 1 0.3072 -8.9183 1.3933 34 1 -0.4285 -11.1319 2.2346 35 1 -0.5562 -11.0483 0.4614 36 1 1.7541 -12.2901 2.0224 37 1 0.4694 -13.1886 1.1790 38 1 1.1621 -12.1630 -0.9693 39 1 2.5141 -13.0412 -0.2153 40 1 4.0343 -11.5421 -1.4921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796133211.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:50 Heat of formation + Delta-G solvation = -222.160397 kcal Electronic energy + Delta-G solvation = -22374.485027 eV Core-core repulsion = 18766.320984 eV Total energy + Delta-G solvation = -3608.164043 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.81819 -40.32063 -39.75248 -37.54623 -36.39951 -36.04805 -33.83591 -33.42695 -30.68257 -30.23703 -28.15911 -26.48007 -23.75094 -23.04088 -21.52229 -21.41721 -20.81065 -20.08883 -18.79858 -18.14921 -17.89800 -17.79682 -17.20028 -16.47436 -16.16072 -15.96759 -15.79966 -15.36028 -15.00496 -14.82643 -14.38558 -14.22637 -13.96897 -13.60898 -13.57161 -13.46399 -13.13118 -12.94966 -12.61777 -12.49099 -12.31715 -12.12458 -12.00483 -11.83556 -11.70618 -11.59674 -11.59160 -11.35293 -10.93897 -10.66318 -10.51990 -10.13683 -8.53797 -6.04667 1.12725 1.35117 1.38043 1.46301 1.58067 1.85193 2.29326 3.03289 3.11610 3.28546 3.54657 3.64672 3.87516 3.99145 4.05781 4.13881 4.16557 4.20269 4.28297 4.35390 4.43133 4.45420 4.57309 4.61885 4.76126 4.95962 5.04574 5.18782 5.20679 5.22266 5.30017 5.33003 5.35607 5.49088 5.53959 5.87529 6.44434 6.67189 6.97753 7.01243 7.37850 7.91479 8.63364 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.044067 B = 0.002707 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.245185 B =10342.494561 C =10761.907447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.339 4.339 8 H 0.084 0.916 9 N -0.558 5.558 10 C 0.436 3.564 11 O -0.618 6.618 12 C 0.071 3.929 13 O -0.348 6.348 14 C 0.457 3.543 15 O -0.528 6.528 16 C -0.101 4.101 17 C -0.064 4.064 18 H 0.064 0.936 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.115 4.115 22 C -0.146 4.146 23 C 0.114 3.886 24 H 0.075 0.925 25 O -0.585 6.585 26 H 0.281 0.719 27 H 0.400 0.600 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.086 0.914 40 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.348 -24.733 2.135 24.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.102 0.898 9 N -0.195 5.195 10 C 0.222 3.778 11 O -0.505 6.505 12 C -0.006 4.006 13 O -0.263 6.263 14 C 0.302 3.698 15 O -0.417 6.417 16 C -0.138 4.138 17 C -0.083 4.083 18 H 0.082 0.918 19 C -0.160 4.160 20 C -0.157 4.157 21 C -0.152 4.152 22 C -0.184 4.184 23 C 0.055 3.945 24 H 0.092 0.908 25 O -0.394 6.394 26 H 0.091 0.909 27 H 0.234 0.766 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.142 0.858 31 H 0.135 0.865 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 1.293 -24.048 2.079 24.172 hybrid contribution -0.274 0.641 -0.116 0.707 sum 1.019 -23.406 1.963 23.511 Atomic orbital electron populations 1.69674 1.06994 1.29775 1.49142 1.26154 0.96603 1.02647 0.95593 0.84840 0.77899 0.76236 0.78832 1.19420 1.19321 1.19491 1.19731 0.92950 0.83384 1.50722 0.89778 1.41754 1.09549 1.04212 1.64014 1.20128 0.88085 0.85426 0.84114 1.90520 1.15486 1.87719 1.56783 1.22482 0.90258 0.82737 1.05139 1.86574 1.40891 1.15310 1.83555 1.24598 0.89326 0.84544 0.71341 1.90601 1.17863 1.86624 1.46654 1.21552 0.97459 0.87456 1.07373 1.20969 0.96213 0.91546 0.99568 0.91773 1.21716 0.99153 0.99057 0.96026 1.21529 0.97998 0.94138 1.02010 1.21500 0.98394 0.97902 0.97408 1.22222 0.99814 0.97663 0.98690 1.21770 0.92247 0.93385 0.87061 0.90762 1.86499 1.59355 1.52027 1.41488 0.90921 0.76577 0.87904 0.87627 0.85809 0.86549 0.90655 0.92094 0.91118 0.92890 0.90715 0.90715 0.92320 0.89504 0.75410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.19 13.05 21.66 0.28 -48.90 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.03 16 3 Si 1.00 42.41 29.55 68.60 2.03 44.44 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.34 -19.32 9.68 84.04 0.81 -18.50 16 8 H 0.08 5.08 7.16 -2.91 -0.02 5.06 16 9 N -0.56 -29.26 5.29 -306.99 -1.62 -30.88 16 10 C 0.44 21.92 7.86 87.65 0.69 22.61 16 11 O -0.62 -36.08 16.08 15.75 0.25 -35.83 16 12 C 0.07 2.79 5.94 71.23 0.42 3.21 16 13 O -0.35 -13.39 9.75 -45.03 -0.44 -13.83 16 14 C 0.46 14.51 7.68 71.24 0.55 15.06 16 15 O -0.53 -18.12 13.72 21.98 0.30 -17.82 16 16 C -0.10 -2.34 5.21 29.85 0.16 -2.18 16 17 C -0.06 -1.30 1.58 -10.79 -0.02 -1.31 16 18 H 0.06 1.59 7.96 -2.39 -0.02 1.57 16 19 C -0.12 -2.34 4.94 30.59 0.15 -2.18 16 20 C -0.12 -1.85 5.92 30.59 0.18 -1.67 16 21 C -0.11 -1.26 5.92 30.59 0.18 -1.08 16 22 C -0.15 -1.67 5.54 30.59 0.17 -1.50 16 23 C 0.11 1.63 2.90 30.60 0.09 1.72 16 24 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 25 O -0.58 -9.07 12.56 -148.98 -1.87 -10.94 16 26 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 27 H 0.40 19.75 7.90 -92.70 -0.73 19.02 16 28 H 0.10 3.67 8.13 -2.38 -0.02 3.65 16 29 H 0.11 3.71 8.13 -2.39 -0.02 3.69 16 30 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.12 2.70 7.54 -2.39 -0.02 2.68 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.52 5.96 -2.39 -0.01 1.50 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.40 2.55 9.08 -74.05 -0.67 1.88 16 Total: -1.00 -71.93 333.44 2.44 -69.49 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: -0.34 Total: 30.16 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 3.85 Total: 14.13 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -1.34 Total: -79.78 kcal Atomic # 8 Polarization: -76.67 SS G_CDS: -1.76 Total: -78.43 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -71.93 2.44 -69.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796133211.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.675 kcal (2) G-P(sol) polarization free energy of solvation -71.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds