Wall clock time and date at job start Tue Mar 31 2020 05:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 120.00221 * 2 1 4 4 H 1.48506 * 109.47297 * 90.00069 * 3 2 1 5 5 H 1.48503 * 109.47261 * 330.00250 * 3 2 1 6 6 H 1.48500 * 109.47454 * 210.00243 * 3 2 1 7 7 C 1.38949 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99709 * 359.97438 * 7 2 1 9 9 N 1.37101 * 120.00025 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99649 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00174 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99541 * 179.97438 * 10 9 7 13 13 O 1.45206 * 109.46768 * 180.02562 * 12 10 9 14 14 C 1.34229 * 116.99690 * 180.02562 * 13 12 10 15 15 O 1.20817 * 120.00201 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99673 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.47058 * 179.97438 * 16 14 13 18 18 H 1.09001 * 109.47289 * 304.99995 * 17 16 14 19 19 C 1.53003 * 109.47024 * 64.99800 * 17 16 14 20 20 C 1.52999 * 109.47024 * 179.97438 * 19 17 16 21 21 C 1.52997 * 109.47014 * 300.00281 * 20 19 17 22 22 C 1.52991 * 109.47471 * 60.00287 * 21 20 19 23 23 C 1.52994 * 109.47476 * 184.99843 * 17 16 14 24 24 H 1.09001 * 109.46987 * 300.00337 * 23 17 16 25 25 O 1.42908 * 109.46791 * 59.99736 * 23 17 16 26 26 H 0.97008 * 120.00016 * 359.97438 * 1 2 3 27 27 H 0.96993 * 120.00062 * 359.97438 * 9 7 2 28 28 H 1.08996 * 109.47057 * 299.99739 * 12 10 9 29 29 H 1.08999 * 109.47501 * 60.00398 * 12 10 9 30 30 H 1.09001 * 109.46809 * 299.99785 * 16 14 13 31 31 H 1.08999 * 109.47218 * 59.99785 * 16 14 13 32 32 H 1.09000 * 109.47246 * 300.00200 * 19 17 16 33 33 H 1.09001 * 109.46928 * 59.99975 * 19 17 16 34 34 H 1.09001 * 109.47289 * 60.00195 * 20 19 17 35 35 H 1.09001 * 109.46988 * 180.02562 * 20 19 17 36 36 H 1.09004 * 109.47014 * 180.02562 * 21 20 19 37 37 H 1.08998 * 109.47567 * 299.99569 * 21 20 19 38 38 H 1.08994 * 109.47423 * 59.99615 * 22 21 20 39 39 H 1.09001 * 109.47365 * 180.02562 * 22 21 20 40 40 H 0.96702 * 113.99770 * 179.97438 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 1.4001 5 1 1.4456 2.6527 -0.7000 6 1 3.5457 1.4402 -0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0011 12 6 5.5607 -2.3705 -0.0022 13 8 6.0447 -3.7396 -0.0026 14 6 7.3754 -3.9154 -0.0031 15 8 8.1114 -2.9573 -0.0037 16 6 7.9514 -5.3081 -0.0029 17 6 9.4793 -5.2280 -0.0042 18 1 9.8106 -4.6208 -0.8466 19 6 9.9577 -4.5919 1.3024 20 6 11.4857 -4.5124 1.3014 21 6 12.0695 -5.9211 1.1762 22 6 11.5911 -6.5571 -0.1305 23 6 10.0637 -6.6364 -0.1297 24 1 9.7323 -7.2436 0.7126 25 8 9.6167 -7.2305 -1.3502 26 1 -0.4850 0.8401 0.0004 27 1 3.8648 -0.3633 -0.0014 28 1 5.9233 -1.8571 -0.8927 29 1 5.9248 -1.8564 0.8872 30 1 7.6158 -5.8399 0.8874 31 1 7.6150 -5.8405 -0.8926 32 1 9.5414 -3.5885 1.3919 33 1 9.6264 -5.1991 2.1448 34 1 11.8174 -3.9054 0.4590 35 1 11.8265 -4.0597 2.2325 36 1 13.1581 -5.8645 1.1759 37 1 11.7379 -6.5281 2.0185 38 1 11.9228 -5.9502 -0.9728 39 1 12.0067 -7.5609 -0.2195 40 1 9.9496 -8.1265 -1.4964 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796141354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:53 Heat of formation + Delta-G solvation = -191.578740 kcal Electronic energy + Delta-G solvation = -22433.501056 eV Core-core repulsion = 18826.663133 eV Total energy + Delta-G solvation = -3606.837922 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.63805 -39.31212 -38.24968 -36.26960 -35.72640 -34.03699 -33.02931 -31.77781 -30.01826 -28.94446 -27.15997 -24.43250 -23.04329 -22.19978 -20.50305 -20.09804 -19.61013 -18.55688 -17.59984 -17.50809 -16.51583 -16.27722 -15.73130 -15.35962 -14.98106 -14.83545 -14.46834 -14.14332 -14.03726 -13.43070 -13.34326 -13.13641 -12.84452 -12.51275 -12.41387 -12.21321 -12.10184 -11.84207 -11.65540 -11.28508 -11.24808 -10.98944 -10.76955 -10.65495 -10.63378 -10.44411 -10.18337 -10.04724 -9.98265 -9.65600 -8.63599 -8.27270 -6.37407 -3.90149 2.32252 2.70542 3.00340 3.04761 3.13319 3.58482 3.84106 4.05420 4.26766 4.31534 4.50544 4.65945 4.75974 4.88544 4.90417 5.03191 5.06534 5.13249 5.15150 5.22763 5.32851 5.43186 5.46348 5.58389 5.61317 5.65542 5.71065 5.77077 5.83110 5.88785 5.91291 6.10796 6.17848 6.63574 7.34624 7.47208 7.88706 8.03438 8.50275 8.85859 9.32094 9.68390 10.74968 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.037088 B = 0.002909 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.775257 B = 9623.002236 C =10136.055337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.308 4.308 8 H 0.122 0.878 9 N -0.581 5.581 10 C 0.448 3.552 11 O -0.557 6.557 12 C 0.058 3.942 13 O -0.326 6.326 14 C 0.460 3.540 15 O -0.515 6.515 16 C -0.108 4.108 17 C -0.066 4.066 18 H 0.087 0.913 19 C -0.124 4.124 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.150 4.150 23 C 0.110 3.890 24 H 0.058 0.942 25 O -0.565 6.565 26 H 0.275 0.725 27 H 0.373 0.627 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.969 -10.241 1.674 27.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.436 4.436 8 H 0.140 0.860 9 N -0.221 5.221 10 C 0.233 3.767 11 O -0.438 6.438 12 C -0.020 4.020 13 O -0.240 6.240 14 C 0.303 3.697 15 O -0.405 6.405 16 C -0.145 4.145 17 C -0.084 4.084 18 H 0.105 0.895 19 C -0.161 4.161 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.188 4.188 23 C 0.051 3.949 24 H 0.076 0.924 25 O -0.371 6.371 26 H 0.086 0.914 27 H 0.206 0.794 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.122 0.878 31 H 0.134 0.866 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 24.214 -9.953 1.617 26.230 hybrid contribution 0.910 1.046 0.041 1.387 sum 25.124 -8.907 1.658 26.708 Atomic orbital electron populations 1.69615 1.05649 1.27722 1.48526 1.25034 0.95521 0.98052 0.97317 0.86675 0.79865 0.83868 0.79067 1.19427 1.19970 1.19355 1.19428 0.78709 0.96867 1.48585 0.86025 1.42042 1.07627 1.05721 1.66695 1.19231 0.87024 0.85104 0.85349 1.90604 1.69076 1.30739 1.53418 1.22722 0.95030 0.80788 1.03466 1.86577 1.23505 1.30981 1.82950 1.23822 0.80838 0.92850 0.72157 1.90602 1.60451 1.43274 1.46124 1.21398 0.95376 0.91215 1.06517 1.20966 0.92374 0.94916 1.00176 0.89450 1.21767 0.95768 1.02722 0.95827 1.21536 0.95462 0.96558 1.02150 1.21510 1.00282 0.96687 0.97120 1.22239 0.96105 1.01350 0.99097 1.21804 0.92643 0.93829 0.86625 0.92415 1.86544 1.75186 1.34104 1.41261 0.91414 0.79403 0.89505 0.89509 0.87780 0.86649 0.89317 0.92019 0.91700 0.91739 0.91804 0.91855 0.91012 0.91716 0.77555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.36 13.96 55.50 0.77 -24.58 16 2 C 0.04 1.21 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 19.22 27.74 -169.99 -4.71 14.51 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.36 6.52 56.52 0.37 -5.00 16 7 C -0.31 -8.70 10.16 -14.93 -0.15 -8.85 16 8 H 0.12 3.92 7.39 -52.48 -0.39 3.53 16 9 N -0.58 -13.99 5.09 -10.96 -0.06 -14.04 16 10 C 0.45 10.58 7.86 -10.98 -0.09 10.49 16 11 O -0.56 -15.57 16.08 -14.11 -0.23 -15.80 16 12 C 0.06 1.06 5.94 36.01 0.21 1.27 16 13 O -0.33 -5.97 9.76 -45.90 -0.45 -6.42 16 14 C 0.46 6.98 7.68 36.01 0.28 7.25 16 15 O -0.52 -8.36 13.72 -18.74 -0.26 -8.61 16 16 C -0.11 -1.23 5.21 -27.88 -0.15 -1.38 16 17 C -0.07 -0.66 1.58 -90.62 -0.14 -0.80 16 18 H 0.09 1.02 7.96 -51.93 -0.41 0.61 16 19 C -0.12 -1.17 4.95 -26.73 -0.13 -1.30 16 20 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 21 C -0.12 -0.76 5.92 -26.74 -0.16 -0.92 16 22 C -0.15 -0.99 5.54 -26.76 -0.15 -1.14 16 23 C 0.11 0.86 2.90 -26.76 -0.08 0.78 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 O -0.57 -4.73 12.56 -35.23 -0.44 -5.18 16 26 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.37 7.82 5.76 -40.82 -0.24 7.58 16 28 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 29 H 0.09 1.40 8.13 -51.93 -0.42 0.98 16 30 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.12 1.33 7.53 -51.93 -0.39 0.94 16 32 H 0.09 1.04 5.96 -51.93 -0.31 0.73 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.38 1.56 9.08 45.56 0.41 1.98 16 LS Contribution 330.32 15.07 4.98 4.98 Total: -1.00 -34.22 330.32 -6.34 -40.56 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -5.14 Total: 9.16 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -0.81 Total: 5.43 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.72 Total: -38.63 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -1.37 Total: -36.01 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.71 Total: 14.51 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.22 -6.34 -40.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796141354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.017 kcal (2) G-P(sol) polarization free energy of solvation -34.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds