Wall clock time and date at job start Tue Mar 31 2020 05:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 120.00221 * 2 1 4 4 H 1.48506 * 109.47297 * 90.00069 * 3 2 1 5 5 H 1.48503 * 109.47261 * 330.00250 * 3 2 1 6 6 H 1.48500 * 109.47454 * 210.00243 * 3 2 1 7 7 C 1.38949 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99709 * 359.97438 * 7 2 1 9 9 N 1.37101 * 120.00025 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99649 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00174 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99541 * 179.97438 * 10 9 7 13 13 O 1.45206 * 109.46768 * 180.02562 * 12 10 9 14 14 C 1.34229 * 116.99690 * 180.02562 * 13 12 10 15 15 O 1.20817 * 120.00201 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99673 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.47058 * 179.97438 * 16 14 13 18 18 H 1.09001 * 109.47289 * 304.99995 * 17 16 14 19 19 C 1.53003 * 109.47024 * 64.99800 * 17 16 14 20 20 C 1.52999 * 109.47024 * 179.97438 * 19 17 16 21 21 C 1.52997 * 109.47014 * 300.00281 * 20 19 17 22 22 C 1.52991 * 109.47471 * 60.00287 * 21 20 19 23 23 C 1.52994 * 109.47476 * 184.99843 * 17 16 14 24 24 H 1.09001 * 109.46987 * 300.00337 * 23 17 16 25 25 O 1.42908 * 109.46791 * 59.99736 * 23 17 16 26 26 H 0.97008 * 120.00016 * 359.97438 * 1 2 3 27 27 H 0.96993 * 120.00062 * 359.97438 * 9 7 2 28 28 H 1.08996 * 109.47057 * 299.99739 * 12 10 9 29 29 H 1.08999 * 109.47501 * 60.00398 * 12 10 9 30 30 H 1.09001 * 109.46809 * 299.99785 * 16 14 13 31 31 H 1.08999 * 109.47218 * 59.99785 * 16 14 13 32 32 H 1.09000 * 109.47246 * 300.00200 * 19 17 16 33 33 H 1.09001 * 109.46928 * 59.99975 * 19 17 16 34 34 H 1.09001 * 109.47289 * 60.00195 * 20 19 17 35 35 H 1.09001 * 109.46988 * 180.02562 * 20 19 17 36 36 H 1.09004 * 109.47014 * 180.02562 * 21 20 19 37 37 H 1.08998 * 109.47567 * 299.99569 * 21 20 19 38 38 H 1.08994 * 109.47423 * 59.99615 * 22 21 20 39 39 H 1.09001 * 109.47365 * 180.02562 * 22 21 20 40 40 H 0.96702 * 113.99770 * 179.97438 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 1.4001 5 1 1.4456 2.6527 -0.7000 6 1 3.5457 1.4402 -0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0011 12 6 5.5607 -2.3705 -0.0022 13 8 6.0447 -3.7396 -0.0026 14 6 7.3754 -3.9154 -0.0031 15 8 8.1114 -2.9573 -0.0037 16 6 7.9514 -5.3081 -0.0029 17 6 9.4793 -5.2280 -0.0042 18 1 9.8106 -4.6208 -0.8466 19 6 9.9577 -4.5919 1.3024 20 6 11.4857 -4.5124 1.3014 21 6 12.0695 -5.9211 1.1762 22 6 11.5911 -6.5571 -0.1305 23 6 10.0637 -6.6364 -0.1297 24 1 9.7323 -7.2436 0.7126 25 8 9.6167 -7.2305 -1.3502 26 1 -0.4850 0.8401 0.0004 27 1 3.8648 -0.3633 -0.0014 28 1 5.9233 -1.8571 -0.8927 29 1 5.9248 -1.8564 0.8872 30 1 7.6158 -5.8399 0.8874 31 1 7.6150 -5.8405 -0.8926 32 1 9.5414 -3.5885 1.3919 33 1 9.6264 -5.1991 2.1448 34 1 11.8174 -3.9054 0.4590 35 1 11.8265 -4.0597 2.2325 36 1 13.1581 -5.8645 1.1759 37 1 11.7379 -6.5281 2.0185 38 1 11.9228 -5.9502 -0.9728 39 1 12.0067 -7.5609 -0.2195 40 1 9.9496 -8.1265 -1.4964 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796141354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:53 Heat of formation + Delta-G solvation = -216.789375 kcal Electronic energy + Delta-G solvation = -22434.594271 eV Core-core repulsion = 18826.663133 eV Total energy + Delta-G solvation = -3607.931137 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.83110 -40.41388 -39.80835 -37.55827 -36.39689 -36.09833 -33.90629 -33.80240 -30.71120 -30.34585 -28.19742 -26.32903 -23.73849 -23.02223 -21.56725 -21.47056 -20.80943 -20.52540 -18.81082 -18.14854 -17.87122 -17.80137 -17.26912 -16.64223 -16.17522 -16.02242 -15.53163 -15.33119 -14.92680 -14.82232 -14.51279 -14.27105 -14.21376 -13.97142 -13.60922 -13.50218 -13.13042 -13.01551 -12.61506 -12.47551 -12.31378 -12.01927 -11.99850 -11.83231 -11.70454 -11.60381 -11.59194 -11.34786 -10.93707 -10.67729 -10.59665 -10.35767 -8.47448 -6.10727 1.12712 1.28732 1.32382 1.39061 1.46418 1.74008 2.19050 2.80820 3.06794 3.28261 3.55063 3.64116 3.84590 3.96015 3.99967 4.09140 4.12882 4.16925 4.28471 4.35224 4.43624 4.45937 4.57710 4.62180 4.76769 4.96208 5.04859 5.18652 5.20621 5.22687 5.30347 5.32154 5.43690 5.50926 5.54435 5.83673 6.45362 6.66338 6.76258 6.97234 7.23956 7.75953 8.69235 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.037088 B = 0.002909 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.775257 B = 9623.002236 C =10136.055337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.008 4.008 3 Si 0.962 3.038 4 H -0.254 1.254 5 H -0.271 1.271 6 H -0.233 1.233 7 C -0.334 4.334 8 H 0.060 0.940 9 N -0.576 5.576 10 C 0.447 3.553 11 O -0.609 6.609 12 C 0.067 3.933 13 O -0.350 6.350 14 C 0.460 3.540 15 O -0.525 6.525 16 C -0.103 4.103 17 C -0.064 4.064 18 H 0.065 0.935 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.115 4.115 22 C -0.146 4.146 23 C 0.113 3.887 24 H 0.073 0.927 25 O -0.585 6.585 26 H 0.283 0.717 27 H 0.393 0.607 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.153 -9.535 2.112 29.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.208 4.208 3 Si 0.782 3.218 4 H -0.178 1.178 5 H -0.196 1.196 6 H -0.156 1.156 7 C -0.463 4.463 8 H 0.078 0.922 9 N -0.218 5.218 10 C 0.235 3.765 11 O -0.494 6.494 12 C -0.010 4.010 13 O -0.265 6.265 14 C 0.304 3.696 15 O -0.415 6.415 16 C -0.140 4.140 17 C -0.083 4.083 18 H 0.084 0.916 19 C -0.159 4.159 20 C -0.157 4.157 21 C -0.153 4.153 22 C -0.184 4.184 23 C 0.054 3.946 24 H 0.091 0.909 25 O -0.394 6.394 26 H 0.092 0.908 27 H 0.229 0.771 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.141 0.859 31 H 0.134 0.866 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 27.437 -9.260 2.051 29.030 hybrid contribution -0.127 0.711 -0.109 0.730 sum 27.310 -8.549 1.943 28.683 Atomic orbital electron populations 1.69781 1.08072 1.29598 1.49005 1.26097 0.96481 1.02657 0.95531 0.85405 0.79510 0.76706 0.80214 1.17813 1.19587 1.15616 1.19010 0.80736 0.95359 1.51208 0.92160 1.41820 1.06137 1.06996 1.66816 1.20218 0.89407 0.84018 0.82906 1.90577 1.70974 1.32657 1.55174 1.22568 0.90544 0.81805 1.06059 1.86587 1.25475 1.30833 1.83626 1.24512 0.79535 0.94166 0.71341 1.90598 1.60263 1.43985 1.46612 1.21550 0.96212 0.88926 1.07324 1.20965 0.91245 0.96401 0.99645 0.91624 1.21719 0.96842 1.01401 0.95957 1.21530 0.94352 0.97727 1.02043 1.21501 1.00842 0.95565 0.97358 1.22209 0.95109 1.02344 0.98721 1.21769 0.93310 0.92454 0.87019 0.90903 1.86497 1.75690 1.35676 1.41519 0.90771 0.77084 0.86955 0.86558 0.85909 0.86650 0.91837 0.90751 0.92790 0.91099 0.90763 0.90809 0.92256 0.89632 0.75437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.06 13.96 21.66 0.30 -54.76 16 2 C -0.01 -0.42 5.50 84.93 0.47 0.05 16 3 Si 0.96 38.33 27.74 68.60 1.90 40.23 16 4 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.23 -7.89 6.52 99.48 0.65 -7.24 16 7 C -0.33 -19.61 10.16 84.04 0.85 -18.75 16 8 H 0.06 4.19 7.39 -2.91 -0.02 4.17 16 9 N -0.58 -27.62 5.09 -306.98 -1.56 -29.18 16 10 C 0.45 21.24 7.86 87.66 0.69 21.93 16 11 O -0.61 -35.41 16.08 15.74 0.25 -35.16 16 12 C 0.07 2.36 5.94 71.24 0.42 2.79 16 13 O -0.35 -12.54 9.76 -45.06 -0.44 -12.98 16 14 C 0.46 13.46 7.68 71.24 0.55 14.01 16 15 O -0.53 -16.39 13.72 21.99 0.30 -16.09 16 16 C -0.10 -2.23 5.21 29.85 0.16 -2.07 16 17 C -0.06 -1.20 1.58 -10.79 -0.02 -1.22 16 18 H 0.07 1.51 7.96 -2.39 -0.02 1.49 16 19 C -0.12 -2.14 4.95 30.60 0.15 -1.99 16 20 C -0.12 -1.69 5.92 30.59 0.18 -1.50 16 21 C -0.12 -1.17 5.92 30.59 0.18 -0.99 16 22 C -0.15 -1.56 5.54 30.57 0.17 -1.39 16 23 C 0.11 1.52 2.90 30.57 0.09 1.61 16 24 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 25 O -0.59 -8.69 12.56 -148.98 -1.87 -10.56 16 26 H 0.28 15.28 8.31 -92.70 -0.77 14.51 16 27 H 0.39 15.48 5.76 -92.71 -0.53 14.95 16 28 H 0.11 3.40 8.13 -2.39 -0.02 3.38 16 29 H 0.12 3.42 8.13 -2.39 -0.02 3.40 16 30 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.12 2.54 7.53 -2.39 -0.02 2.52 16 32 H 0.06 1.44 5.96 -2.39 -0.01 1.43 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.40 2.37 9.08 -74.06 -0.67 1.70 16 Total: -1.00 -78.76 330.32 2.58 -76.19 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: -0.20 Total: 29.83 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 3.89 Total: 12.48 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -1.26 Total: -83.94 kcal Atomic # 8 Polarization: -73.03 SS G_CDS: -1.76 Total: -74.79 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 1.90 Total: 40.23 kcal Total: -78.76 2.58 -76.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796141354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.604 kcal (2) G-P(sol) polarization free energy of solvation -78.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds