Wall clock time and date at job start Tue Mar 31 2020 05:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 110.55154 * 2 1 4 4 C 1.54998 * 110.61767 * 237.12565 * 2 1 3 5 5 C 1.54812 * 102.09146 * 204.31967 * 4 2 1 6 6 H 1.08994 * 110.48916 * 139.55721 * 5 4 2 7 7 C 1.53005 * 110.48673 * 262.20261 * 5 4 2 8 8 C 1.54101 * 104.18885 * 20.87454 * 5 4 2 9 9 H 1.08998 * 109.88516 * 242.45963 * 8 5 4 10 10 C 1.50706 * 109.87760 * 121.45662 * 8 5 4 11 11 O 1.20820 * 119.99714 * 245.00604 * 10 8 5 12 12 O 1.34223 * 119.99666 * 65.00038 * 10 8 5 13 13 C 1.45209 * 116.99725 * 179.97438 * 12 10 8 14 14 C 1.50698 * 109.46951 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00472 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99538 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99665 * 179.72653 * 16 14 13 18 18 C 1.50703 * 109.47138 * 180.28062 * 17 16 14 19 19 H 1.08001 * 120.00037 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99824 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00502 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99575 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47135 * 90.00187 * 22 20 18 24 24 H 1.48500 * 109.46751 * 210.00163 * 22 20 18 25 25 H 1.48503 * 109.47215 * 329.99996 * 22 20 18 26 26 O 1.43740 * 107.29396 * 2.03398 * 8 5 4 27 27 H 1.08996 * 109.47027 * 182.87139 * 1 2 3 28 28 H 1.08996 * 109.47006 * 302.87676 * 1 2 3 29 29 H 1.09004 * 109.47055 * 62.87447 * 1 2 3 30 30 H 1.09000 * 110.90700 * 86.12165 * 4 2 1 31 31 H 1.08999 * 110.90723 * 322.51119 * 4 2 1 32 32 H 1.09000 * 109.47054 * 174.76459 * 7 5 4 33 33 H 1.09000 * 109.47185 * 294.76528 * 7 5 4 34 34 H 1.09003 * 109.46984 * 54.76512 * 7 5 4 35 35 H 1.09003 * 109.46563 * 60.00429 * 13 12 10 36 36 H 1.08993 * 109.46953 * 300.00733 * 13 12 10 37 37 H 0.97001 * 120.00485 * 0.02562 * 16 14 13 38 38 H 1.09009 * 109.47454 * 300.27637 * 17 16 14 39 39 H 1.08998 * 109.47492 * 60.27932 * 17 16 14 40 40 H 0.96997 * 120.00009 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0758 -0.7874 -1.2184 5 6 3.4811 -1.2121 -0.7270 6 1 3.7008 -2.2338 -1.0364 7 6 4.5467 -0.2500 -1.2560 8 6 3.3875 -1.1218 0.8086 9 1 4.0897 -0.3752 1.1795 10 6 3.6962 -2.4640 1.4205 11 8 2.8397 -3.0627 2.0269 12 8 4.9226 -2.9941 1.2918 13 6 5.1486 -4.2897 1.9074 14 6 6.5708 -4.7221 1.6599 15 8 7.3204 -4.0086 1.0275 16 7 7.0101 -5.9015 2.1423 17 6 8.3910 -6.3246 1.8967 18 6 8.6241 -7.6715 2.5313 19 1 7.8238 -8.1629 3.0647 20 6 9.8594 -8.2758 2.4319 21 7 10.8344 -7.6768 1.7838 22 14 10.1485 -9.9450 3.2192 23 1 9.8224 -11.0158 2.2433 24 1 11.5725 -10.0613 3.6242 25 1 9.2805 -10.0849 4.4160 26 8 2.0417 -0.7348 1.1326 27 1 -0.3633 -1.0263 0.0515 28 1 -0.3633 0.5578 0.8630 29 1 -0.3633 0.4686 -0.9147 30 1 2.1483 -0.1450 -2.0959 31 1 1.4566 -1.6599 -1.4267 32 1 5.5147 -0.5081 -0.8263 33 1 4.5990 -0.3272 -2.3420 34 1 4.2857 0.7707 -0.9764 35 1 4.4662 -5.0214 1.4747 36 1 4.9716 -4.2179 2.9804 37 1 6.4108 -6.4721 2.6484 38 1 8.5642 -6.3942 0.8227 39 1 9.0767 -5.5958 2.3288 40 1 11.7032 -8.1022 1.7136 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800299483.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:02 Heat of formation + Delta-G solvation = -178.188911 kcal Electronic energy + Delta-G solvation = -22322.239620 eV Core-core repulsion = 18715.982324 eV Total energy + Delta-G solvation = -3606.257296 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.04948 -39.65799 -38.59395 -36.32957 -34.26983 -33.95773 -32.54857 -32.41716 -29.49630 -27.62519 -27.13125 -26.33032 -22.74312 -22.03633 -21.44435 -20.82771 -19.95902 -17.98935 -17.56025 -16.83899 -16.64187 -16.38406 -15.66444 -15.56210 -15.12640 -14.74213 -14.52454 -14.18866 -14.15309 -13.37855 -13.20952 -12.96572 -12.84056 -12.70329 -12.61113 -12.27491 -12.01413 -11.82903 -11.74223 -11.68143 -11.05192 -11.03106 -11.01786 -10.93027 -10.71900 -10.53871 -10.35759 -10.02900 -9.45597 -9.20030 -8.79735 -8.00846 -6.20998 -4.28417 2.04083 2.13474 3.15325 3.22354 3.28581 3.30941 3.49479 3.90317 4.03776 4.29999 4.36636 4.41840 4.56213 4.73621 4.81659 4.95464 5.03219 5.12600 5.15151 5.19985 5.22697 5.27620 5.32230 5.35555 5.44267 5.57204 5.66863 5.77118 5.79773 5.94690 6.26436 6.42823 7.20585 7.28704 7.43940 7.57616 7.67003 7.90390 8.47938 8.69313 8.94195 9.38026 10.89126 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.042400 B = 0.002687 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.218816 B =10417.657185 C =10849.163673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 H 0.076 0.924 4 C -0.148 4.148 5 C -0.115 4.115 6 H 0.094 0.906 7 C -0.146 4.146 8 C 0.095 3.905 9 H 0.112 0.888 10 C 0.458 3.542 11 O -0.491 6.491 12 O -0.326 6.326 13 C 0.049 3.951 14 C 0.500 3.500 15 O -0.534 6.534 16 N -0.706 5.706 17 C 0.251 3.749 18 C -0.545 4.545 19 H 0.064 0.936 20 C 0.064 3.936 21 N -0.885 5.885 22 Si 0.905 3.095 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 O -0.346 6.346 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.393 0.607 38 H 0.029 0.971 39 H 0.030 0.970 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.369 15.101 -5.207 24.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 H 0.094 0.906 4 C -0.186 4.186 5 C -0.134 4.134 6 H 0.112 0.888 7 C -0.203 4.203 8 C 0.035 3.965 9 H 0.129 0.871 10 C 0.299 3.701 11 O -0.377 6.377 12 O -0.241 6.241 13 C -0.029 4.029 14 C 0.283 3.717 15 O -0.411 6.411 16 N -0.356 5.356 17 C 0.131 3.869 18 C -0.584 4.584 19 H 0.082 0.918 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.732 3.268 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 O -0.265 6.265 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.226 0.774 38 H 0.047 0.953 39 H 0.048 0.952 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.946 15.329 -5.328 24.195 hybrid contribution 0.022 -1.364 0.654 1.513 sum -17.925 13.965 -4.674 23.198 Atomic orbital electron populations 1.21776 0.92625 1.03390 1.02562 1.23249 0.95577 0.95313 0.84521 0.90567 1.23326 0.95335 1.01180 0.98721 1.22460 0.96608 1.02615 0.91688 0.88811 1.21870 0.98542 0.98132 1.01736 1.22243 0.87402 0.91470 0.95362 0.87058 1.23520 0.80465 0.87935 0.78137 1.90678 1.47485 1.61344 1.38226 1.86529 1.32267 1.34850 1.70465 1.22897 0.97268 0.83047 0.99667 1.19858 0.87729 0.82914 0.81176 1.90706 1.56878 1.53366 1.40177 1.46368 1.16576 1.18487 1.54208 1.19181 0.75327 0.94960 0.97424 1.21208 0.97810 1.03172 1.36169 0.91760 1.24953 0.95635 0.98298 0.95105 1.69969 1.03048 1.38445 1.40735 0.86388 0.77606 0.83247 0.79517 1.20421 1.20966 1.19709 1.88988 1.25623 1.73230 1.38685 0.91481 0.91656 0.90820 0.89302 0.90008 0.90894 0.91512 0.92248 0.88491 0.88414 0.77396 0.95253 0.95223 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.66 37.16 0.36 -0.63 16 2 C 0.07 0.57 3.97 -25.68 -0.10 0.47 16 3 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 4 C -0.15 -1.09 6.14 -24.72 -0.15 -1.24 16 5 C -0.11 -1.06 3.26 -89.09 -0.29 -1.35 16 6 H 0.09 0.97 7.69 -51.93 -0.40 0.57 16 7 C -0.15 -1.13 8.91 37.16 0.33 -0.80 16 8 C 0.09 1.08 3.63 -27.30 -0.10 0.98 16 9 H 0.11 1.09 7.69 -51.93 -0.40 0.69 16 10 C 0.46 6.71 7.06 36.01 0.25 6.97 16 11 O -0.49 -8.35 16.27 -25.38 -0.41 -8.77 16 12 O -0.33 -5.18 9.75 -45.88 -0.45 -5.63 16 13 C 0.05 0.75 5.94 36.00 0.21 0.97 16 14 C 0.50 9.98 7.91 -10.99 -0.09 9.89 16 15 O -0.53 -12.86 16.50 -14.10 -0.23 -13.09 16 16 N -0.71 -14.55 5.55 -61.47 -0.34 -14.89 16 17 C 0.25 6.54 5.43 -5.19 -0.03 6.51 16 18 C -0.55 -14.56 9.28 -34.44 -0.32 -14.88 16 19 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 21 N -0.88 -25.74 13.29 55.43 0.74 -25.01 16 22 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 O -0.35 -4.18 10.44 -54.85 -0.57 -4.75 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.47 7.86 -51.93 -0.41 0.06 16 31 H 0.08 0.63 8.06 -51.93 -0.42 0.21 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.10 1.31 8.13 -51.93 -0.42 0.89 16 36 H 0.10 1.33 8.13 -51.93 -0.42 0.91 16 37 H 0.39 6.82 8.32 -40.82 -0.34 6.48 16 38 H 0.03 0.84 8.14 -51.92 -0.42 0.42 16 39 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 344.40 15.07 5.19 5.19 Total: -1.00 -33.97 344.40 -7.27 -41.24 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.15 Total: 1.57 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -0.02 Total: 8.53 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.40 Total: -39.90 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -1.67 Total: -32.24 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.97 -7.27 -41.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800299483.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.953 kcal (2) G-P(sol) polarization free energy of solvation -33.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds