Wall clock time and date at job start Tue Mar 31 2020 05:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 110.55154 * 2 1 4 4 C 1.54998 * 110.61767 * 237.12565 * 2 1 3 5 5 C 1.54812 * 102.09146 * 204.31967 * 4 2 1 6 6 H 1.08994 * 110.48916 * 139.55721 * 5 4 2 7 7 C 1.53005 * 110.48673 * 262.20261 * 5 4 2 8 8 C 1.54101 * 104.18885 * 20.87454 * 5 4 2 9 9 H 1.08998 * 109.88516 * 242.45963 * 8 5 4 10 10 C 1.50706 * 109.87760 * 121.45662 * 8 5 4 11 11 O 1.20820 * 119.99714 * 245.00604 * 10 8 5 12 12 O 1.34223 * 119.99666 * 65.00038 * 10 8 5 13 13 C 1.45209 * 116.99725 * 179.97438 * 12 10 8 14 14 C 1.50698 * 109.46951 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00472 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99538 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99665 * 179.72653 * 16 14 13 18 18 C 1.50703 * 109.47138 * 180.28062 * 17 16 14 19 19 H 1.08001 * 120.00037 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99824 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00502 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99575 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47135 * 90.00187 * 22 20 18 24 24 H 1.48500 * 109.46751 * 210.00163 * 22 20 18 25 25 H 1.48503 * 109.47215 * 329.99996 * 22 20 18 26 26 O 1.43740 * 107.29396 * 2.03398 * 8 5 4 27 27 H 1.08996 * 109.47027 * 182.87139 * 1 2 3 28 28 H 1.08996 * 109.47006 * 302.87676 * 1 2 3 29 29 H 1.09004 * 109.47055 * 62.87447 * 1 2 3 30 30 H 1.09000 * 110.90700 * 86.12165 * 4 2 1 31 31 H 1.08999 * 110.90723 * 322.51119 * 4 2 1 32 32 H 1.09000 * 109.47054 * 174.76459 * 7 5 4 33 33 H 1.09000 * 109.47185 * 294.76528 * 7 5 4 34 34 H 1.09003 * 109.46984 * 54.76512 * 7 5 4 35 35 H 1.09003 * 109.46563 * 60.00429 * 13 12 10 36 36 H 1.08993 * 109.46953 * 300.00733 * 13 12 10 37 37 H 0.97001 * 120.00485 * 0.02562 * 16 14 13 38 38 H 1.09009 * 109.47454 * 300.27637 * 17 16 14 39 39 H 1.08998 * 109.47492 * 60.27932 * 17 16 14 40 40 H 0.96997 * 120.00009 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0758 -0.7874 -1.2184 5 6 3.4811 -1.2121 -0.7270 6 1 3.7008 -2.2338 -1.0364 7 6 4.5467 -0.2500 -1.2560 8 6 3.3875 -1.1218 0.8086 9 1 4.0897 -0.3752 1.1795 10 6 3.6962 -2.4640 1.4205 11 8 2.8397 -3.0627 2.0269 12 8 4.9226 -2.9941 1.2918 13 6 5.1486 -4.2897 1.9074 14 6 6.5708 -4.7221 1.6599 15 8 7.3204 -4.0086 1.0275 16 7 7.0101 -5.9015 2.1423 17 6 8.3910 -6.3246 1.8967 18 6 8.6241 -7.6715 2.5313 19 1 7.8238 -8.1629 3.0647 20 6 9.8594 -8.2758 2.4319 21 7 10.8344 -7.6768 1.7838 22 14 10.1485 -9.9450 3.2192 23 1 9.8224 -11.0158 2.2433 24 1 11.5725 -10.0613 3.6242 25 1 9.2805 -10.0849 4.4160 26 8 2.0417 -0.7348 1.1326 27 1 -0.3633 -1.0263 0.0515 28 1 -0.3633 0.5578 0.8630 29 1 -0.3633 0.4686 -0.9147 30 1 2.1483 -0.1450 -2.0959 31 1 1.4566 -1.6599 -1.4267 32 1 5.5147 -0.5081 -0.8263 33 1 4.5990 -0.3272 -2.3420 34 1 4.2857 0.7707 -0.9764 35 1 4.4662 -5.0214 1.4747 36 1 4.9716 -4.2179 2.9804 37 1 6.4108 -6.4721 2.6484 38 1 8.5642 -6.3942 0.8227 39 1 9.0767 -5.5958 2.3288 40 1 11.7032 -8.1022 1.7136 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800299483.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:01 Heat of formation + Delta-G solvation = -200.926877 kcal Electronic energy + Delta-G solvation = -22323.225612 eV Core-core repulsion = 18715.982324 eV Total energy + Delta-G solvation = -3607.243288 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.11877 -40.79472 -40.07524 -37.60395 -36.19995 -34.69599 -34.42894 -33.20699 -30.98273 -29.03747 -27.80267 -27.63662 -24.66558 -22.90117 -22.27516 -21.72024 -21.65192 -19.37001 -18.93925 -18.13922 -17.92091 -17.31433 -17.14305 -17.03206 -16.54971 -16.16062 -15.92493 -15.39996 -14.85976 -14.70141 -14.56415 -14.13428 -13.92822 -13.86374 -13.64532 -13.51361 -13.24871 -12.95241 -12.93495 -12.72586 -12.55679 -12.37928 -12.24049 -11.99974 -11.77201 -11.65118 -11.51069 -11.43004 -10.97444 -10.82638 -10.82021 -9.94913 -8.30415 -6.46905 0.90584 0.98904 1.44031 1.45626 1.51956 1.57084 2.27905 2.45945 2.82970 3.04859 3.29492 3.43761 3.67453 3.70574 3.81466 3.97481 3.98989 4.06752 4.14945 4.36825 4.38659 4.56324 4.74741 4.83046 4.84891 4.99581 5.03739 5.10910 5.11754 5.13087 5.21014 5.27771 5.34273 5.40122 5.61298 5.73174 5.81132 6.47830 6.61673 6.75503 7.18774 7.33285 8.81652 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.042400 B = 0.002687 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.218816 B =10417.657185 C =10849.163673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.063 3.937 3 H 0.097 0.903 4 C -0.141 4.141 5 C -0.115 4.115 6 H 0.077 0.923 7 C -0.142 4.142 8 C 0.094 3.906 9 H 0.128 0.872 10 C 0.460 3.540 11 O -0.518 6.518 12 O -0.339 6.339 13 C 0.058 3.942 14 C 0.502 3.498 15 O -0.580 6.580 16 N -0.698 5.698 17 C 0.267 3.733 18 C -0.557 4.557 19 H 0.085 0.915 20 C 0.005 3.995 21 N -0.929 5.929 22 Si 0.985 3.015 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.256 1.256 26 O -0.373 6.373 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.412 0.588 38 H -0.006 1.006 39 H -0.007 1.007 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.118 15.135 -5.027 25.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.007 3.993 3 H 0.115 0.885 4 C -0.178 4.178 5 C -0.134 4.134 6 H 0.095 0.905 7 C -0.199 4.199 8 C 0.035 3.965 9 H 0.145 0.855 10 C 0.303 3.697 11 O -0.406 6.406 12 O -0.255 6.255 13 C -0.018 4.018 14 C 0.287 3.713 15 O -0.460 6.460 16 N -0.350 5.350 17 C 0.144 3.856 18 C -0.595 4.595 19 H 0.103 0.897 20 C -0.195 4.195 21 N -0.568 5.568 22 Si 0.808 3.192 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.180 1.180 26 O -0.293 6.293 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.135 0.865 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.249 0.751 38 H 0.012 0.988 39 H 0.011 0.989 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.751 15.364 -5.135 25.545 hybrid contribution 0.527 -1.295 0.565 1.508 sum -19.224 14.069 -4.570 24.257 Atomic orbital electron populations 1.21813 0.91787 1.02746 1.03870 1.23572 0.96315 0.95944 0.83516 0.88496 1.23328 0.93647 1.01398 0.99415 1.22485 0.98398 1.02265 0.90221 0.90495 1.21854 0.96973 0.98743 1.02300 1.22443 0.87806 0.89710 0.96542 0.85499 1.24236 0.79413 0.88684 0.77391 1.90656 1.47980 1.62310 1.39626 1.86532 1.33332 1.34940 1.70699 1.22778 0.93853 0.83853 1.01352 1.20572 0.89312 0.81824 0.79557 1.90684 1.58712 1.54576 1.42046 1.46048 1.14979 1.19336 1.54636 1.18642 0.77548 0.94480 0.94892 1.21605 0.98605 1.03213 1.36077 0.89676 1.26042 0.95294 1.02701 0.95463 1.70124 1.03722 1.40615 1.42312 0.85159 0.77511 0.77652 0.78910 1.19610 1.20981 1.18014 1.88968 1.25820 1.73840 1.40709 0.92931 0.91801 0.88220 0.86533 0.90593 0.92784 0.90310 0.90240 0.85941 0.85950 0.75148 0.98837 0.98858 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.66 71.98 0.70 -0.99 16 2 C 0.06 0.88 3.97 31.28 0.12 1.01 16 3 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 4 C -0.14 -1.76 6.14 31.90 0.20 -1.57 16 5 C -0.11 -1.98 3.26 -9.80 -0.03 -2.02 16 6 H 0.08 1.58 7.69 -2.39 -0.02 1.56 16 7 C -0.14 -1.96 8.91 71.98 0.64 -1.31 16 8 C 0.09 2.06 3.63 30.22 0.11 2.17 16 9 H 0.13 2.34 7.69 -2.39 -0.02 2.32 16 10 C 0.46 13.25 7.06 71.24 0.50 13.75 16 11 O -0.52 -17.32 16.27 28.33 0.46 -16.86 16 12 O -0.34 -10.69 9.75 -45.00 -0.44 -11.13 16 13 C 0.06 1.74 5.94 71.24 0.42 2.17 16 14 C 0.50 20.17 7.91 87.66 0.69 20.87 16 15 O -0.58 -28.89 16.50 15.76 0.26 -28.63 16 16 N -0.70 -28.91 5.55 -466.78 -2.59 -31.50 16 17 C 0.27 14.36 5.43 85.63 0.46 14.82 16 18 C -0.56 -29.78 9.28 25.60 0.24 -29.54 16 19 H 0.09 4.09 7.60 -2.91 -0.02 4.07 16 20 C 0.00 0.27 5.46 84.66 0.46 0.73 16 21 N -0.93 -55.32 13.29 21.45 0.28 -55.03 16 22 Si 0.98 41.85 29.54 68.60 2.03 43.87 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 24 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 26 O -0.37 -8.61 10.44 -130.22 -1.36 -9.97 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.12 0.82 7.86 -2.39 -0.02 0.80 16 31 H 0.08 1.05 8.06 -2.39 -0.02 1.03 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.76 16 35 H 0.12 3.08 8.13 -2.39 -0.02 3.06 16 36 H 0.12 3.11 8.13 -2.39 -0.02 3.09 16 37 H 0.41 13.81 8.32 -92.71 -0.77 13.04 16 38 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 39 H -0.01 -0.40 8.14 -2.39 -0.02 -0.41 16 40 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -75.79 344.40 3.43 -72.36 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.27 Total: 16.79 kcal Atomic # 6 Polarization: 15.57 SS G_CDS: 4.52 Total: 20.09 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -2.30 Total: -86.54 kcal Atomic # 8 Polarization: -65.51 SS G_CDS: -1.08 Total: -66.58 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Total: -75.79 3.43 -72.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800299483.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.563 kcal (2) G-P(sol) polarization free energy of solvation -75.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds