Wall clock time and date at job start Tue Mar 31 2020 05:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.41607 * 2 1 4 4 C 1.54482 * 110.37188 * 237.69624 * 2 1 3 5 5 C 1.54514 * 104.06102 * 217.19073 * 4 2 1 6 6 H 1.09002 * 110.50628 * 241.35372 * 5 4 2 7 7 C 1.52995 * 110.51190 * 118.64523 * 5 4 2 8 8 C 1.54480 * 104.06158 * 359.97438 * 5 4 2 9 9 H 1.09004 * 110.46322 * 265.10039 * 8 5 4 10 10 C 1.50697 * 110.37074 * 142.81727 * 8 5 4 11 11 O 1.20833 * 119.99747 * 248.16736 * 10 8 5 12 12 O 1.34230 * 120.00262 * 67.88358 * 10 8 5 13 13 C 1.45202 * 116.99836 * 180.27336 * 12 10 8 14 14 C 1.50701 * 109.46859 * 180.02562 * 13 12 10 15 15 O 1.21275 * 120.00011 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99566 * 180.02562 * 14 13 12 17 17 C 1.46507 * 119.99590 * 180.02562 * 16 14 13 18 18 C 1.50698 * 109.46913 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00086 * 0.02562 * 18 17 16 20 20 C 1.37882 * 120.00005 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00016 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99694 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46964 * 90.00237 * 22 20 18 24 24 H 1.48502 * 109.46957 * 209.99724 * 22 20 18 25 25 H 1.48497 * 109.47160 * 330.00016 * 22 20 18 26 26 O 1.44421 * 110.37610 * 122.31021 * 2 1 3 27 27 H 1.09000 * 109.46926 * 299.13713 * 1 2 3 28 28 H 1.08992 * 109.47315 * 59.14148 * 1 2 3 29 29 H 1.09004 * 109.46795 * 179.14429 * 1 2 3 30 30 H 1.09005 * 110.50577 * 335.82850 * 4 2 1 31 31 H 1.08996 * 110.51379 * 98.54213 * 4 2 1 32 32 H 1.09000 * 109.47031 * 305.35135 * 7 5 4 33 33 H 1.08994 * 109.47348 * 65.35415 * 7 5 4 34 34 H 1.09004 * 109.46774 * 185.35616 * 7 5 4 35 35 H 1.08998 * 109.47630 * 300.00638 * 13 12 10 36 36 H 1.09004 * 109.46770 * 60.01042 * 13 12 10 37 37 H 0.97001 * 120.00823 * 359.97438 * 16 14 13 38 38 H 1.08998 * 109.47163 * 299.99808 * 17 16 14 39 39 H 1.09004 * 109.46912 * 60.00013 * 17 16 14 40 40 H 0.97002 * 119.99857 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 6 2.0678 -0.7739 -1.2241 5 6 3.3178 -1.5056 -0.6860 6 1 4.2109 -1.1772 -1.2176 7 6 3.1462 -3.0210 -0.8086 8 6 3.3877 -1.0867 0.7993 9 1 4.0534 -0.2325 0.9233 10 6 3.8535 -2.2411 1.6486 11 8 3.0928 -2.7621 2.4295 12 8 5.1117 -2.6943 1.5335 13 6 5.4893 -3.8130 2.3786 14 6 6.9266 -4.1802 2.1133 15 8 7.5695 -3.5599 1.2932 16 7 7.4975 -5.1980 2.7876 17 6 8.8950 -5.5546 2.5301 18 6 9.2868 -6.7158 3.4071 19 1 8.5668 -7.1454 4.0879 20 6 10.5642 -7.2304 3.3397 21 7 10.9060 -8.2440 4.1047 22 14 11.8093 -6.4877 2.1617 23 1 12.5512 -5.3991 2.8472 24 1 12.7639 -7.5376 1.7238 25 1 11.1028 -5.9360 0.9778 26 8 2.0329 -0.7236 1.1442 27 1 -0.3633 0.5004 0.8976 28 1 -0.3633 0.5271 -0.8821 29 1 -0.3633 -1.0276 -0.0153 30 1 1.3275 -1.4919 -1.5773 31 1 2.3429 -0.0838 -2.0216 32 1 2.2243 -3.3236 -0.3120 33 1 3.0992 -3.2973 -1.8619 34 1 3.9930 -3.5217 -0.3391 35 1 5.3735 -3.5328 3.4256 36 1 4.8491 -4.6672 2.1580 37 1 6.9834 -5.6940 3.4438 38 1 9.0116 -5.8341 1.4830 39 1 9.5347 -4.7003 2.7516 40 1 11.8046 -8.6063 4.0570 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800299486.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:04 Heat of formation + Delta-G solvation = -171.806169 kcal Electronic energy + Delta-G solvation = -22527.795587 eV Core-core repulsion = 18921.815067 eV Total energy + Delta-G solvation = -3605.980519 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.17500 -39.69917 -38.74008 -36.39623 -34.40303 -33.93213 -32.59883 -32.44484 -29.71254 -27.85159 -27.35347 -26.57672 -22.57997 -21.93975 -21.59728 -20.45986 -20.15119 -17.86121 -17.66224 -17.32236 -16.72867 -16.61769 -15.85469 -15.72474 -15.17911 -14.75927 -14.57156 -14.25150 -13.90420 -13.66535 -13.14953 -13.01634 -12.88770 -12.83492 -12.53699 -12.48285 -12.38670 -12.10933 -11.72122 -11.57315 -11.18959 -11.09030 -11.08228 -10.84998 -10.75317 -10.53887 -10.12262 -10.01966 -9.56201 -9.37770 -8.83608 -8.29632 -6.25673 -4.28857 1.99414 2.04543 2.99587 3.23922 3.30656 3.38350 3.48735 3.81556 4.02748 4.28982 4.30110 4.35533 4.54387 4.67976 4.77164 4.91531 4.99518 5.04811 5.08597 5.12936 5.17106 5.19585 5.24152 5.29802 5.43909 5.53407 5.61245 5.74257 5.76216 5.92947 6.19116 6.35656 6.70713 6.98642 7.06601 7.29654 7.58795 8.02576 8.39077 8.65537 8.77533 9.33224 10.86082 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.044360 B = 0.002844 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.046118 B = 9844.480011 C =10142.133069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 H 0.075 0.925 4 C -0.147 4.147 5 C -0.111 4.111 6 H 0.102 0.898 7 C -0.158 4.158 8 C 0.089 3.911 9 H 0.110 0.890 10 C 0.470 3.530 11 O -0.489 6.489 12 O -0.327 6.327 13 C 0.049 3.951 14 C 0.503 3.497 15 O -0.536 6.536 16 N -0.699 5.699 17 C 0.222 3.778 18 C -0.546 4.546 19 H 0.081 0.919 20 C 0.078 3.922 21 N -0.890 5.890 22 Si 0.877 3.123 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.260 1.260 26 O -0.343 6.343 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.399 0.601 38 H 0.028 0.972 39 H 0.023 0.977 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.138 15.748 -10.170 26.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 H 0.093 0.907 4 C -0.185 4.185 5 C -0.130 4.130 6 H 0.120 0.880 7 C -0.215 4.215 8 C 0.030 3.970 9 H 0.128 0.872 10 C 0.311 3.689 11 O -0.375 6.375 12 O -0.243 6.243 13 C -0.029 4.029 14 C 0.286 3.714 15 O -0.414 6.414 16 N -0.349 5.349 17 C 0.101 3.899 18 C -0.584 4.584 19 H 0.099 0.901 20 C -0.126 4.126 21 N -0.527 5.527 22 Si 0.703 3.297 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.185 1.185 26 O -0.263 6.263 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.233 0.767 38 H 0.046 0.954 39 H 0.041 0.959 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.825 15.810 -10.257 26.637 hybrid contribution 0.583 -0.069 -0.128 0.601 sum -18.242 15.741 -10.385 26.237 Atomic orbital electron populations 1.21800 0.92610 1.03247 1.02662 1.23110 0.95811 0.95441 0.84604 0.90688 1.23161 0.97160 0.99864 0.98298 1.22466 0.99927 0.97649 0.92930 0.88001 1.22018 1.02787 0.93633 1.03053 1.22437 0.87066 0.94558 0.92945 0.87249 1.23059 0.80265 0.83973 0.81576 1.90697 1.54801 1.56565 1.35420 1.86532 1.30004 1.47385 1.60334 1.22853 0.95704 0.88733 0.95566 1.19889 0.87378 0.81599 0.82535 1.90698 1.64164 1.52230 1.34273 1.46072 1.15437 1.32339 1.41100 1.19559 0.76852 0.96092 0.97421 1.21065 0.98951 1.14943 1.23460 0.90114 1.24794 0.98008 0.94438 0.95349 1.69876 1.20217 1.24017 1.38620 0.86814 0.81448 0.79270 0.82144 1.19787 1.20838 1.18468 1.89257 1.24571 1.74415 1.38016 0.91604 0.90852 0.91568 0.89802 0.89795 0.91936 0.91270 0.91480 0.88175 0.88245 0.76670 0.95409 0.95867 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.52 37.16 0.35 -0.57 16 2 C 0.07 0.52 3.92 -25.95 -0.10 0.41 16 3 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.15 -0.97 6.28 -25.16 -0.16 -1.13 16 5 C -0.11 -0.97 3.63 -89.05 -0.32 -1.30 16 6 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 7 C -0.16 -1.56 8.10 37.15 0.30 -1.26 16 8 C 0.09 0.97 3.74 -27.11 -0.10 0.87 16 9 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 10 C 0.47 6.56 5.49 36.00 0.20 6.75 16 11 O -0.49 -7.99 16.30 -25.29 -0.41 -8.41 16 12 O -0.33 -4.91 8.85 -45.90 -0.41 -5.31 16 13 C 0.05 0.71 5.94 36.01 0.21 0.93 16 14 C 0.50 9.43 7.91 -10.99 -0.09 9.34 16 15 O -0.54 -12.09 16.50 -14.10 -0.23 -12.32 16 16 N -0.70 -13.71 5.55 -61.47 -0.34 -14.05 16 17 C 0.22 5.34 4.50 -5.19 -0.02 5.31 16 18 C -0.55 -14.70 9.83 -34.44 -0.34 -15.04 16 19 H 0.08 2.26 7.84 -52.48 -0.41 1.84 16 20 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 21 N -0.89 -26.13 13.96 55.43 0.77 -25.35 16 22 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 26 O -0.34 -4.00 10.61 -54.48 -0.58 -4.58 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.47 8.12 -51.93 -0.42 0.04 16 30 H 0.08 0.53 7.45 -51.93 -0.39 0.15 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.79 6.34 -51.93 -0.33 0.46 16 35 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 36 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 37 H 0.40 6.77 8.32 -40.82 -0.34 6.43 16 38 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 39 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 336.88 15.07 5.08 5.08 Total: -1.00 -33.92 336.88 -7.00 -40.92 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.05 Total: 1.23 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -0.16 Total: 6.40 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.43 Total: -39.41 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -1.63 Total: -30.62 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.92 -7.00 -40.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800299486.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.887 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds