Wall clock time and date at job start Tue Mar 31 2020 05:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.41607 * 2 1 4 4 C 1.54482 * 110.37188 * 237.69624 * 2 1 3 5 5 C 1.54514 * 104.06102 * 217.19073 * 4 2 1 6 6 H 1.09002 * 110.50628 * 241.35372 * 5 4 2 7 7 C 1.52995 * 110.51190 * 118.64523 * 5 4 2 8 8 C 1.54480 * 104.06158 * 359.97438 * 5 4 2 9 9 H 1.09004 * 110.46322 * 265.10039 * 8 5 4 10 10 C 1.50697 * 110.37074 * 142.81727 * 8 5 4 11 11 O 1.20833 * 119.99747 * 248.16736 * 10 8 5 12 12 O 1.34230 * 120.00262 * 67.88358 * 10 8 5 13 13 C 1.45202 * 116.99836 * 180.27336 * 12 10 8 14 14 C 1.50701 * 109.46859 * 180.02562 * 13 12 10 15 15 O 1.21275 * 120.00011 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99566 * 180.02562 * 14 13 12 17 17 C 1.46507 * 119.99590 * 180.02562 * 16 14 13 18 18 C 1.50698 * 109.46913 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00086 * 0.02562 * 18 17 16 20 20 C 1.37882 * 120.00005 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00016 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99694 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46964 * 90.00237 * 22 20 18 24 24 H 1.48502 * 109.46957 * 209.99724 * 22 20 18 25 25 H 1.48497 * 109.47160 * 330.00016 * 22 20 18 26 26 O 1.44421 * 110.37610 * 122.31021 * 2 1 3 27 27 H 1.09000 * 109.46926 * 299.13713 * 1 2 3 28 28 H 1.08992 * 109.47315 * 59.14148 * 1 2 3 29 29 H 1.09004 * 109.46795 * 179.14429 * 1 2 3 30 30 H 1.09005 * 110.50577 * 335.82850 * 4 2 1 31 31 H 1.08996 * 110.51379 * 98.54213 * 4 2 1 32 32 H 1.09000 * 109.47031 * 305.35135 * 7 5 4 33 33 H 1.08994 * 109.47348 * 65.35415 * 7 5 4 34 34 H 1.09004 * 109.46774 * 185.35616 * 7 5 4 35 35 H 1.08998 * 109.47630 * 300.00638 * 13 12 10 36 36 H 1.09004 * 109.46770 * 60.01042 * 13 12 10 37 37 H 0.97001 * 120.00823 * 359.97438 * 16 14 13 38 38 H 1.08998 * 109.47163 * 299.99808 * 17 16 14 39 39 H 1.09004 * 109.46912 * 60.00013 * 17 16 14 40 40 H 0.97002 * 119.99857 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 6 2.0678 -0.7739 -1.2241 5 6 3.3178 -1.5056 -0.6860 6 1 4.2109 -1.1772 -1.2176 7 6 3.1462 -3.0210 -0.8086 8 6 3.3877 -1.0867 0.7993 9 1 4.0534 -0.2325 0.9233 10 6 3.8535 -2.2411 1.6486 11 8 3.0928 -2.7621 2.4295 12 8 5.1117 -2.6943 1.5335 13 6 5.4893 -3.8130 2.3786 14 6 6.9266 -4.1802 2.1133 15 8 7.5695 -3.5599 1.2932 16 7 7.4975 -5.1980 2.7876 17 6 8.8950 -5.5546 2.5301 18 6 9.2868 -6.7158 3.4071 19 1 8.5668 -7.1454 4.0879 20 6 10.5642 -7.2304 3.3397 21 7 10.9060 -8.2440 4.1047 22 14 11.8093 -6.4877 2.1617 23 1 12.5512 -5.3991 2.8472 24 1 12.7639 -7.5376 1.7238 25 1 11.1028 -5.9360 0.9778 26 8 2.0329 -0.7236 1.1442 27 1 -0.3633 0.5004 0.8976 28 1 -0.3633 0.5271 -0.8821 29 1 -0.3633 -1.0276 -0.0153 30 1 1.3275 -1.4919 -1.5773 31 1 2.3429 -0.0838 -2.0216 32 1 2.2243 -3.3236 -0.3120 33 1 3.0992 -3.2973 -1.8619 34 1 3.9930 -3.5217 -0.3391 35 1 5.3735 -3.5328 3.4256 36 1 4.8491 -4.6672 2.1580 37 1 6.9834 -5.6940 3.4438 38 1 9.0116 -5.8341 1.4830 39 1 9.5347 -4.7003 2.7516 40 1 11.8046 -8.6063 4.0570 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800299486.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:03 Heat of formation + Delta-G solvation = -194.731455 kcal Electronic energy + Delta-G solvation = -22528.789702 eV Core-core repulsion = 18921.815067 eV Total energy + Delta-G solvation = -3606.974634 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.17573 -40.79579 -40.06502 -37.58926 -36.21518 -34.66191 -34.46903 -33.20848 -31.22221 -29.27949 -28.01922 -27.68570 -24.22463 -23.08132 -22.19259 -21.76021 -21.35331 -19.41341 -18.78687 -18.29982 -18.23514 -17.52468 -17.24458 -16.99242 -16.52858 -16.13595 -15.96573 -15.26591 -14.95111 -14.77824 -14.60608 -14.30435 -14.21222 -13.74659 -13.66085 -13.61885 -13.36869 -13.08882 -13.03509 -12.71015 -12.41387 -12.30388 -11.96875 -11.93184 -11.81594 -11.68011 -11.65246 -11.49327 -11.00351 -10.92702 -10.82607 -10.05655 -8.40224 -6.48095 0.94071 0.97035 1.34059 1.36690 1.47431 1.49675 2.27821 2.32417 2.90627 2.95121 3.32294 3.44054 3.63428 3.69875 3.86080 3.97611 3.99831 4.06241 4.16487 4.33930 4.39266 4.51905 4.65228 4.73728 4.75219 4.86080 4.97252 5.00044 5.01479 5.07008 5.16073 5.21593 5.23211 5.27804 5.38153 5.72592 6.04842 6.48721 6.52626 6.69981 7.09999 7.25181 8.74356 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.044360 B = 0.002844 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.046118 B = 9844.480011 C =10142.133069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 H 0.094 0.906 4 C -0.138 4.138 5 C -0.110 4.110 6 H 0.117 0.883 7 C -0.157 4.157 8 C 0.086 3.914 9 H 0.131 0.869 10 C 0.472 3.528 11 O -0.519 6.519 12 O -0.337 6.337 13 C 0.056 3.944 14 C 0.508 3.492 15 O -0.574 6.574 16 N -0.697 5.697 17 C 0.233 3.767 18 C -0.549 4.549 19 H 0.060 0.940 20 C 0.026 3.974 21 N -0.931 5.931 22 Si 0.938 3.062 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.257 1.257 26 O -0.374 6.374 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.412 0.588 38 H 0.019 0.981 39 H 0.017 0.983 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.803 17.541 -11.819 28.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.003 3.997 3 H 0.111 0.889 4 C -0.176 4.176 5 C -0.129 4.129 6 H 0.135 0.865 7 C -0.214 4.214 8 C 0.027 3.973 9 H 0.148 0.852 10 C 0.315 3.685 11 O -0.406 6.406 12 O -0.253 6.253 13 C -0.021 4.021 14 C 0.293 3.707 15 O -0.454 6.454 16 N -0.349 5.349 17 C 0.109 3.891 18 C -0.587 4.587 19 H 0.078 0.922 20 C -0.175 4.175 21 N -0.570 5.570 22 Si 0.762 3.238 23 H -0.190 1.190 24 H -0.199 1.199 25 H -0.181 1.181 26 O -0.294 6.294 27 H 0.078 0.922 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.130 0.870 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.063 0.937 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.249 0.751 38 H 0.037 0.963 39 H 0.035 0.965 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.525 17.609 -11.898 28.859 hybrid contribution 0.697 -0.634 0.421 1.032 sum -18.828 16.975 -11.477 27.827 Atomic orbital electron populations 1.21836 0.91959 1.02820 1.03606 1.23422 0.96431 0.96079 0.83810 0.88851 1.23159 0.95952 1.00047 0.98428 1.22546 1.01767 0.96875 0.91709 0.86499 1.22005 1.01046 0.94612 1.03743 1.22685 0.87347 0.93876 0.93397 0.85150 1.23756 0.79326 0.84173 0.81241 1.90677 1.55310 1.57757 1.36903 1.86530 1.30865 1.47399 1.60462 1.22751 0.92792 0.89848 0.96693 1.20438 0.88736 0.80315 0.81178 1.90676 1.65528 1.53336 1.35817 1.45870 1.14143 1.33054 1.41791 1.19184 0.79168 0.94631 0.96072 1.21273 0.98681 1.15513 1.23207 0.92163 1.25620 1.00100 0.94822 0.96951 1.69983 1.21046 1.25520 1.40403 0.85842 0.79127 0.78766 0.80077 1.18965 1.19942 1.18116 1.89237 1.24924 1.75109 1.40128 0.92215 0.88301 0.92726 0.89645 0.87048 0.93231 0.89542 0.93718 0.86080 0.86146 0.75137 0.96322 0.96486 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.52 71.98 0.69 -0.89 16 2 C 0.06 0.76 3.92 31.10 0.12 0.89 16 3 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 4 C -0.14 -1.42 6.28 31.61 0.20 -1.22 16 5 C -0.11 -1.70 3.63 -9.78 -0.04 -1.73 16 6 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 7 C -0.16 -2.93 8.10 71.98 0.58 -2.35 16 8 C 0.09 1.73 3.74 30.35 0.11 1.85 16 9 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 10 C 0.47 12.77 5.49 71.23 0.39 13.17 16 11 O -0.52 -16.77 16.30 28.19 0.46 -16.31 16 12 O -0.34 -9.77 8.85 -45.06 -0.40 -10.17 16 13 C 0.06 1.56 5.94 71.24 0.42 1.99 16 14 C 0.51 18.60 7.91 87.66 0.69 19.30 16 15 O -0.57 -25.53 16.50 15.79 0.26 -25.27 16 16 N -0.70 -26.93 5.55 -466.78 -2.59 -29.52 16 17 C 0.23 11.08 4.50 85.63 0.38 11.47 16 18 C -0.55 -29.73 9.83 25.60 0.25 -29.48 16 19 H 0.06 3.43 7.84 -2.91 -0.02 3.41 16 20 C 0.03 1.42 5.47 84.66 0.46 1.89 16 21 N -0.93 -55.10 13.96 21.45 0.30 -54.80 16 22 Si 0.94 43.19 27.47 68.60 1.88 45.07 16 23 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.26 -11.61 6.54 99.48 0.65 -10.96 16 26 O -0.37 -8.27 10.61 -130.58 -1.38 -9.65 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.71 8.12 -2.38 -0.02 0.69 16 30 H 0.08 0.87 7.45 -2.38 -0.02 0.85 16 31 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.04 1.03 6.34 -2.39 -0.02 1.01 16 35 H 0.12 2.92 8.13 -2.39 -0.02 2.90 16 36 H 0.12 2.89 8.13 -2.38 -0.02 2.87 16 37 H 0.41 13.73 8.32 -92.71 -0.77 12.96 16 38 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 39 H 0.02 0.84 7.57 -2.38 -0.02 0.83 16 40 H 0.27 15.04 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -73.29 336.88 3.02 -70.27 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.22 Total: 15.51 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 4.27 Total: 14.87 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -2.29 Total: -84.32 kcal Atomic # 8 Polarization: -60.33 SS G_CDS: -1.06 Total: -61.40 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.88 Total: 45.07 kcal Total: -73.29 3.02 -70.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800299486.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.461 kcal (2) G-P(sol) polarization free energy of solvation -73.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds