Wall clock time and date at job start Tue Mar 31 2020 05:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.55086 * 2 1 4 4 C 1.55006 * 110.61407 * 237.12588 * 2 1 3 5 5 C 1.54811 * 102.08869 * 204.31416 * 4 2 1 6 6 H 1.09007 * 110.60048 * 139.60815 * 5 4 2 7 7 C 1.52995 * 110.49006 * 262.20352 * 5 4 2 8 8 C 1.54108 * 104.18980 * 20.88053 * 5 4 2 9 9 H 1.08997 * 109.87601 * 121.60214 * 8 5 4 10 10 C 1.50696 * 109.87859 * 242.60531 * 8 5 4 11 11 O 1.20825 * 120.00083 * 114.99550 * 10 8 5 12 12 O 1.34231 * 120.00080 * 295.00104 * 10 8 5 13 13 C 1.45196 * 117.00044 * 180.02562 * 12 10 8 14 14 C 1.50701 * 109.46997 * 179.97438 * 13 12 10 15 15 O 1.21285 * 120.00371 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99973 * 179.97438 * 14 13 12 17 17 C 1.46506 * 120.00031 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.46892 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00511 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99783 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99573 * 180.27665 * 20 18 17 22 22 Si 1.86800 * 119.99781 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46758 * 89.99934 * 22 20 18 24 24 H 1.48499 * 109.47026 * 209.99782 * 22 20 18 25 25 H 1.48496 * 109.47474 * 329.99818 * 22 20 18 26 26 O 1.43746 * 107.29174 * 2.02937 * 8 5 4 27 27 H 1.08998 * 109.46912 * 182.87858 * 1 2 3 28 28 H 1.08995 * 109.46740 * 302.87262 * 1 2 3 29 29 H 1.09001 * 109.47661 * 62.87639 * 1 2 3 30 30 H 1.08998 * 110.90686 * 86.11600 * 4 2 1 31 31 H 1.08994 * 110.93853 * 322.52373 * 4 2 1 32 32 H 1.08996 * 109.47310 * 174.76774 * 7 5 4 33 33 H 1.09004 * 109.47521 * 294.77076 * 7 5 4 34 34 H 1.09002 * 109.47455 * 54.76662 * 7 5 4 35 35 H 1.09007 * 109.47438 * 60.00027 * 13 12 10 36 36 H 1.08997 * 109.47443 * 299.99501 * 13 12 10 37 37 H 0.97006 * 120.00171 * 359.97438 * 16 14 13 38 38 H 1.08992 * 109.47369 * 59.99996 * 17 16 14 39 39 H 1.09005 * 109.46788 * 299.99289 * 17 16 14 40 40 H 0.97004 * 119.99485 * 179.72881 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0757 -0.7875 -1.2185 5 6 3.4811 -1.2121 -0.7271 6 1 3.7031 -2.2335 -1.0364 7 6 4.5466 -0.2500 -1.2561 8 6 3.3876 -1.1218 0.8085 9 1 3.6135 -2.0919 1.2511 10 6 4.3558 -0.0870 1.3209 11 8 3.9428 0.9120 1.8605 12 8 5.6771 -0.2751 1.1777 13 6 6.5506 0.7628 1.6955 14 6 7.9870 0.3807 1.4470 15 8 8.2488 -0.6634 0.8880 16 7 8.9807 1.1996 1.8450 17 6 10.3771 0.8283 1.6029 18 6 11.2836 1.9061 2.1393 19 1 10.8618 2.7804 2.6128 20 6 12.6516 1.7760 2.0256 21 7 13.4428 2.7140 2.4986 22 14 13.3811 0.2636 1.2072 23 1 13.5333 0.5135 -0.2487 24 1 14.7107 -0.0277 1.8011 25 1 12.4795 -0.8972 1.4187 26 8 2.0417 -0.7348 1.1326 27 1 -0.3633 -1.0264 0.0516 28 1 -0.3632 0.5578 0.8631 29 1 -0.3634 0.4685 -0.9146 30 1 2.1481 -0.1451 -2.0961 31 1 1.4567 -1.6599 -1.4274 32 1 5.5146 -0.5081 -0.8266 33 1 4.5989 -0.3272 -2.3422 34 1 4.2856 0.7707 -0.9766 35 1 6.3852 0.8758 2.7671 36 1 6.3329 1.7052 1.1930 37 1 8.7714 2.0351 2.2911 38 1 10.5425 0.7150 0.5315 39 1 10.5950 -0.1138 2.1059 40 1 14.4053 2.6207 2.4221 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800299488.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:06 Heat of formation + Delta-G solvation = -171.741248 kcal Electronic energy + Delta-G solvation = -22740.443261 eV Core-core repulsion = 19134.465557 eV Total energy + Delta-G solvation = -3605.977704 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.34880 -39.60403 -38.67326 -36.40700 -34.40595 -33.98231 -32.57375 -32.44399 -29.67369 -27.79916 -27.12818 -26.58928 -22.98847 -22.08045 -21.28436 -20.45213 -20.14981 -17.91415 -17.70556 -17.12097 -16.69009 -16.51730 -16.06464 -15.77369 -15.19554 -14.77138 -14.43437 -14.13706 -13.98525 -13.36686 -13.25398 -13.04614 -12.87801 -12.71469 -12.63402 -12.39736 -12.33423 -12.13330 -11.85926 -11.46862 -11.33424 -11.10277 -11.07272 -10.81807 -10.73089 -10.57610 -10.02300 -9.98141 -9.56492 -9.36849 -8.83991 -8.29855 -6.26154 -4.29333 2.00805 2.21964 2.99575 3.23493 3.30387 3.37286 3.38085 3.79684 4.00495 4.22767 4.28919 4.48362 4.53870 4.69306 4.89172 4.95974 5.03549 5.07755 5.08914 5.14641 5.15794 5.20093 5.26721 5.36321 5.41619 5.60325 5.68179 5.75738 5.78477 6.07678 6.23945 6.37083 6.70318 6.98231 7.06408 7.29334 7.59062 8.02284 8.38743 8.65255 8.77179 9.32772 10.85625 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.043193 B = 0.002961 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.099983 B = 9454.085975 C = 9769.302099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.065 3.935 3 H 0.075 0.925 4 C -0.148 4.148 5 C -0.110 4.110 6 H 0.103 0.897 7 C -0.169 4.169 8 C 0.092 3.908 9 H 0.136 0.864 10 C 0.446 3.554 11 O -0.497 6.497 12 O -0.326 6.326 13 C 0.046 3.954 14 C 0.503 3.497 15 O -0.536 6.536 16 N -0.699 5.699 17 C 0.222 3.778 18 C -0.547 4.547 19 H 0.081 0.919 20 C 0.078 3.922 21 N -0.890 5.890 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.260 1.260 26 O -0.338 6.338 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.399 0.601 38 H 0.023 0.977 39 H 0.028 0.972 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.015 -6.465 -7.026 25.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.008 3.992 3 H 0.093 0.907 4 C -0.186 4.186 5 C -0.129 4.129 6 H 0.121 0.879 7 C -0.225 4.225 8 C 0.032 3.968 9 H 0.153 0.847 10 C 0.287 3.713 11 O -0.384 6.384 12 O -0.242 6.242 13 C -0.031 4.031 14 C 0.286 3.714 15 O -0.414 6.414 16 N -0.350 5.350 17 C 0.101 3.899 18 C -0.584 4.584 19 H 0.099 0.901 20 C -0.126 4.126 21 N -0.527 5.527 22 Si 0.703 3.297 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.185 1.185 26 O -0.257 6.257 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.233 0.767 38 H 0.041 0.959 39 H 0.046 0.954 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.812 -6.878 -7.032 25.763 hybrid contribution 0.623 0.076 -0.132 0.641 sum -23.189 -6.802 -7.164 25.206 Atomic orbital electron populations 1.21747 0.92523 1.03103 1.02733 1.23303 0.95613 0.95854 0.84458 0.90683 1.23340 0.95306 1.01132 0.98774 1.22442 0.96402 1.02578 0.91492 0.87884 1.22270 0.99925 0.98135 1.02217 1.22436 0.81991 0.95774 0.96577 0.84683 1.24373 0.82687 0.87796 0.76415 1.90675 1.79035 1.29088 1.39619 1.86611 1.16977 1.47566 1.73031 1.22827 0.88352 0.90693 1.01277 1.19913 0.86036 0.85097 0.80371 1.90698 1.84346 1.24130 1.42235 1.46078 1.07317 1.22788 1.58795 1.19554 0.76495 0.97181 0.96688 1.21066 0.90927 1.05854 1.40583 0.90135 1.24796 0.96745 0.96415 0.94635 1.69878 1.04308 1.33458 1.45093 0.86813 0.79009 0.83754 0.80090 1.19795 1.20832 1.18458 1.89012 1.23385 1.73041 1.40226 0.91585 0.91623 0.90851 0.89513 0.89780 0.89009 0.91350 0.92933 0.88333 0.88425 0.76706 0.95882 0.95413 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.66 37.16 0.36 -0.62 16 2 C 0.06 0.58 3.87 -25.67 -0.10 0.48 16 3 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.15 -1.04 6.14 -24.72 -0.15 -1.19 16 5 C -0.11 -0.93 3.64 -89.09 -0.32 -1.26 16 6 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 7 C -0.17 -1.66 7.86 37.15 0.29 -1.37 16 8 C 0.09 0.97 4.00 -27.31 -0.11 0.87 16 9 H 0.14 1.17 8.14 -51.93 -0.42 0.75 16 10 C 0.45 6.00 5.58 36.00 0.20 6.20 16 11 O -0.50 -7.85 16.23 -25.38 -0.41 -8.26 16 12 O -0.33 -4.75 7.35 -45.91 -0.34 -5.08 16 13 C 0.05 0.66 5.94 36.01 0.21 0.88 16 14 C 0.50 9.34 7.91 -10.99 -0.09 9.25 16 15 O -0.54 -11.94 16.50 -14.11 -0.23 -12.18 16 16 N -0.70 -13.67 5.55 -61.47 -0.34 -14.01 16 17 C 0.22 5.32 4.50 -5.19 -0.02 5.30 16 18 C -0.55 -14.69 9.83 -34.44 -0.34 -15.03 16 19 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 20 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 21 N -0.89 -26.11 13.96 55.43 0.77 -25.33 16 22 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 26 O -0.34 -3.90 10.46 -54.85 -0.57 -4.47 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.52 7.86 -51.93 -0.41 0.11 16 31 H 0.08 0.48 8.06 -51.93 -0.42 0.06 16 32 H 0.09 1.12 5.91 -51.93 -0.31 0.82 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.55 7.49 -51.93 -0.39 0.16 16 35 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.10 1.23 8.13 -51.93 -0.42 0.81 16 37 H 0.40 6.77 8.32 -40.82 -0.34 6.43 16 38 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 39 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 334.51 15.07 5.04 5.04 Total: -1.00 -33.41 334.51 -6.93 -40.34 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.01 Total: 1.99 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -0.17 Total: 5.60 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.43 Total: -39.35 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -1.56 Total: -30.00 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.41 -6.93 -40.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800299488.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.403 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds