Wall clock time and date at job start Tue Mar 31 2020 05:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.55086 * 2 1 4 4 C 1.55006 * 110.61407 * 237.12588 * 2 1 3 5 5 C 1.54811 * 102.08869 * 204.31416 * 4 2 1 6 6 H 1.09007 * 110.60048 * 139.60815 * 5 4 2 7 7 C 1.52995 * 110.49006 * 262.20352 * 5 4 2 8 8 C 1.54108 * 104.18980 * 20.88053 * 5 4 2 9 9 H 1.08997 * 109.87601 * 121.60214 * 8 5 4 10 10 C 1.50696 * 109.87859 * 242.60531 * 8 5 4 11 11 O 1.20825 * 120.00083 * 114.99550 * 10 8 5 12 12 O 1.34231 * 120.00080 * 295.00104 * 10 8 5 13 13 C 1.45196 * 117.00044 * 180.02562 * 12 10 8 14 14 C 1.50701 * 109.46997 * 179.97438 * 13 12 10 15 15 O 1.21285 * 120.00371 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99973 * 179.97438 * 14 13 12 17 17 C 1.46506 * 120.00031 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.46892 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00511 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99783 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99573 * 180.27665 * 20 18 17 22 22 Si 1.86800 * 119.99781 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46758 * 89.99934 * 22 20 18 24 24 H 1.48499 * 109.47026 * 209.99782 * 22 20 18 25 25 H 1.48496 * 109.47474 * 329.99818 * 22 20 18 26 26 O 1.43746 * 107.29174 * 2.02937 * 8 5 4 27 27 H 1.08998 * 109.46912 * 182.87858 * 1 2 3 28 28 H 1.08995 * 109.46740 * 302.87262 * 1 2 3 29 29 H 1.09001 * 109.47661 * 62.87639 * 1 2 3 30 30 H 1.08998 * 110.90686 * 86.11600 * 4 2 1 31 31 H 1.08994 * 110.93853 * 322.52373 * 4 2 1 32 32 H 1.08996 * 109.47310 * 174.76774 * 7 5 4 33 33 H 1.09004 * 109.47521 * 294.77076 * 7 5 4 34 34 H 1.09002 * 109.47455 * 54.76662 * 7 5 4 35 35 H 1.09007 * 109.47438 * 60.00027 * 13 12 10 36 36 H 1.08997 * 109.47443 * 299.99501 * 13 12 10 37 37 H 0.97006 * 120.00171 * 359.97438 * 16 14 13 38 38 H 1.08992 * 109.47369 * 59.99996 * 17 16 14 39 39 H 1.09005 * 109.46788 * 299.99289 * 17 16 14 40 40 H 0.97004 * 119.99485 * 179.72881 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0757 -0.7875 -1.2185 5 6 3.4811 -1.2121 -0.7271 6 1 3.7031 -2.2335 -1.0364 7 6 4.5466 -0.2500 -1.2561 8 6 3.3876 -1.1218 0.8085 9 1 3.6135 -2.0919 1.2511 10 6 4.3558 -0.0870 1.3209 11 8 3.9428 0.9120 1.8605 12 8 5.6771 -0.2751 1.1777 13 6 6.5506 0.7628 1.6955 14 6 7.9870 0.3807 1.4470 15 8 8.2488 -0.6634 0.8880 16 7 8.9807 1.1996 1.8450 17 6 10.3771 0.8283 1.6029 18 6 11.2836 1.9061 2.1393 19 1 10.8618 2.7804 2.6128 20 6 12.6516 1.7760 2.0256 21 7 13.4428 2.7140 2.4986 22 14 13.3811 0.2636 1.2072 23 1 13.5333 0.5135 -0.2487 24 1 14.7107 -0.0277 1.8011 25 1 12.4795 -0.8972 1.4187 26 8 2.0417 -0.7348 1.1326 27 1 -0.3633 -1.0264 0.0516 28 1 -0.3632 0.5578 0.8631 29 1 -0.3634 0.4685 -0.9146 30 1 2.1481 -0.1451 -2.0961 31 1 1.4567 -1.6599 -1.4274 32 1 5.5146 -0.5081 -0.8266 33 1 4.5989 -0.3272 -2.3422 34 1 4.2856 0.7707 -0.9766 35 1 6.3852 0.8758 2.7671 36 1 6.3329 1.7052 1.1930 37 1 8.7714 2.0351 2.2911 38 1 10.5425 0.7150 0.5315 39 1 10.5950 -0.1138 2.1059 40 1 14.4053 2.6207 2.4221 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800299488.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:05 Heat of formation + Delta-G solvation = -194.121527 kcal Electronic energy + Delta-G solvation = -22741.413743 eV Core-core repulsion = 19134.465557 eV Total energy + Delta-G solvation = -3606.948186 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.31922 -40.78745 -39.94874 -37.56849 -36.21050 -34.73514 -34.46765 -33.22385 -31.18831 -29.21795 -27.82863 -27.66399 -24.30108 -23.51497 -21.99364 -21.75014 -21.35013 -19.39178 -18.90841 -18.24408 -18.12895 -17.36546 -17.20364 -16.95865 -16.82305 -16.15645 -15.99602 -15.17714 -14.88730 -14.73969 -14.57097 -14.35558 -13.97615 -13.85036 -13.76911 -13.51396 -13.24220 -13.09778 -12.98730 -12.71671 -12.63954 -12.26554 -12.03132 -11.95805 -11.93522 -11.68221 -11.51848 -11.43914 -11.03092 -10.92918 -10.79319 -10.05213 -8.40588 -6.48455 0.97340 1.11762 1.33774 1.36679 1.47717 1.50153 2.27890 2.40537 2.67962 2.94807 3.32686 3.49655 3.58989 3.65812 3.92452 3.96904 3.99419 4.03961 4.22556 4.34216 4.39943 4.48934 4.69847 4.73804 4.78795 4.85125 4.97293 4.99918 5.09174 5.11087 5.14550 5.23053 5.25805 5.32234 5.38710 5.66986 6.04632 6.50007 6.53673 6.70503 7.10089 7.25323 8.74035 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.043193 B = 0.002961 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.099983 B = 9454.085975 C = 9769.302099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.054 3.946 3 H 0.056 0.944 4 C -0.137 4.137 5 C -0.107 4.107 6 H 0.125 0.875 7 C -0.166 4.166 8 C 0.088 3.912 9 H 0.155 0.845 10 C 0.448 3.552 11 O -0.526 6.526 12 O -0.334 6.334 13 C 0.053 3.947 14 C 0.507 3.493 15 O -0.573 6.573 16 N -0.698 5.698 17 C 0.233 3.767 18 C -0.549 4.549 19 H 0.060 0.940 20 C 0.026 3.974 21 N -0.931 5.931 22 Si 0.939 3.061 23 H -0.264 1.264 24 H -0.275 1.275 25 H -0.258 1.258 26 O -0.358 6.358 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.039 0.961 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.412 0.588 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.552 -7.872 -8.329 28.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.003 4.003 3 H 0.074 0.926 4 C -0.174 4.174 5 C -0.125 4.125 6 H 0.144 0.856 7 C -0.223 4.223 8 C 0.028 3.972 9 H 0.172 0.828 10 C 0.291 3.709 11 O -0.414 6.414 12 O -0.250 6.250 13 C -0.023 4.023 14 C 0.293 3.707 15 O -0.453 6.453 16 N -0.350 5.350 17 C 0.110 3.890 18 C -0.587 4.587 19 H 0.078 0.922 20 C -0.175 4.175 21 N -0.570 5.570 22 Si 0.762 3.238 23 H -0.189 1.189 24 H -0.200 1.200 25 H -0.182 1.182 26 O -0.276 6.276 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.248 0.752 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -25.380 -8.268 -8.330 27.963 hybrid contribution 1.037 0.584 0.306 1.229 sum -24.343 -7.685 -8.024 26.759 Atomic orbital electron populations 1.21761 0.90925 1.03670 1.03364 1.23490 0.96919 0.95037 0.84808 0.92628 1.23335 0.94261 1.01768 0.98081 1.22510 0.96833 1.03430 0.89761 0.85649 1.22218 0.99072 0.97786 1.03191 1.22742 0.80974 0.95287 0.98156 0.82751 1.25085 0.82288 0.88000 0.75510 1.90659 1.79204 1.30456 1.41086 1.86632 1.17638 1.47584 1.73146 1.22708 0.85602 0.91330 1.02702 1.20463 0.87345 0.84011 0.78873 1.90677 1.85175 1.25674 1.43729 1.45881 1.06117 1.23696 1.59256 1.19175 0.78373 0.95622 0.95857 1.21275 0.91589 1.05856 1.39969 0.92209 1.25622 0.97344 0.99234 0.95287 1.69985 1.04845 1.35466 1.46674 0.85840 0.78388 0.80129 0.79443 1.18863 1.19980 1.18165 1.89003 1.23605 1.73213 1.41785 0.90811 0.92649 0.88801 0.88230 0.87735 0.91484 0.89698 0.94166 0.86464 0.86355 0.75214 0.96426 0.96421 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.66 71.98 0.70 -0.95 16 2 C 0.05 0.89 3.87 31.28 0.12 1.01 16 3 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.14 -1.53 6.14 31.90 0.20 -1.33 16 5 C -0.11 -1.55 3.64 -9.80 -0.04 -1.59 16 6 H 0.13 1.30 8.14 -2.38 -0.02 1.28 16 7 C -0.17 -3.02 7.86 71.98 0.57 -2.46 16 8 C 0.09 1.72 4.00 30.22 0.12 1.85 16 9 H 0.16 2.36 8.14 -2.39 -0.02 2.34 16 10 C 0.45 11.68 5.58 71.23 0.40 12.08 16 11 O -0.53 -16.36 16.23 28.31 0.46 -15.90 16 12 O -0.33 -9.42 7.35 -45.07 -0.33 -9.75 16 13 C 0.05 1.48 5.94 71.24 0.42 1.90 16 14 C 0.51 18.47 7.91 87.66 0.69 19.17 16 15 O -0.57 -25.24 16.50 15.75 0.26 -24.98 16 16 N -0.70 -26.93 5.55 -466.77 -2.59 -29.52 16 17 C 0.23 11.09 4.50 85.63 0.38 11.47 16 18 C -0.55 -29.73 9.83 25.60 0.25 -29.48 16 19 H 0.06 3.41 7.84 -2.91 -0.02 3.38 16 20 C 0.03 1.42 5.47 84.66 0.46 1.89 16 21 N -0.93 -55.10 13.96 21.45 0.30 -54.80 16 22 Si 0.94 43.16 27.47 68.60 1.88 45.05 16 23 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 25 H -0.26 -11.64 6.54 99.48 0.65 -10.99 16 26 O -0.36 -7.79 10.46 -130.22 -1.36 -9.15 16 27 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.88 7.86 -2.39 -0.02 0.86 16 31 H 0.10 0.78 8.06 -2.39 -0.02 0.76 16 32 H 0.07 1.59 5.91 -2.39 -0.01 1.57 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.04 0.81 7.49 -2.39 -0.02 0.79 16 35 H 0.12 2.85 8.14 -2.38 -0.02 2.83 16 36 H 0.12 2.81 8.13 -2.39 -0.02 2.79 16 37 H 0.41 13.74 8.32 -92.70 -0.77 12.97 16 38 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 39 H 0.02 0.89 7.20 -2.38 -0.02 0.87 16 40 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -72.07 334.51 3.12 -68.95 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.22 Total: 16.54 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 4.28 Total: 13.56 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -2.29 Total: -84.32 kcal Atomic # 8 Polarization: -58.81 SS G_CDS: -0.97 Total: -59.78 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.88 Total: 45.05 kcal Total: -72.07 3.12 -68.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800299488.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.167 kcal (2) G-P(sol) polarization free energy of solvation -72.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds