Wall clock time and date at job start Tue Mar 31 2020 05:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 119.99978 * 2 1 4 4 H 1.48503 * 109.46907 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47036 * 299.99246 * 3 2 1 6 6 H 1.48494 * 109.47573 * 59.99632 * 3 2 1 7 7 C 1.37871 * 119.99576 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00248 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47154 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47260 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47260 * 180.02562 * 11 10 9 13 13 C 1.50705 * 109.47154 * 180.02562 * 12 11 10 14 14 O 1.20826 * 119.99739 * 359.97438 * 13 12 11 15 15 O 1.34225 * 120.00072 * 180.02562 * 13 12 11 16 16 C 1.45198 * 117.00215 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47280 * 179.97438 * 16 15 13 18 18 N 1.46499 * 109.46842 * 64.99795 * 17 16 15 19 19 C 1.47093 * 125.55889 * 90.00569 * 18 17 16 20 20 C 1.54091 * 103.77776 * 180.02562 * 19 18 17 21 21 O 1.45704 * 104.12991 * 359.92869 * 20 19 18 22 22 C 1.34001 * 125.56070 * 270.01636 * 18 17 16 23 23 O 1.21513 * 123.07229 * 0.03827 * 22 18 17 24 24 H 0.97003 * 119.99570 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47024 * 59.99908 * 9 7 2 26 26 H 1.08993 * 109.46869 * 299.99661 * 9 7 2 27 27 H 1.08999 * 109.47058 * 59.99692 * 10 9 7 28 28 H 1.09005 * 109.47366 * 299.99945 * 10 9 7 29 29 H 1.08999 * 109.47281 * 59.99896 * 11 10 9 30 30 H 1.08997 * 109.47253 * 300.00225 * 11 10 9 31 31 H 1.08999 * 109.47058 * 59.99759 * 12 11 10 32 32 H 1.09005 * 109.47366 * 300.00012 * 12 11 10 33 33 H 1.08996 * 109.47036 * 59.99780 * 16 15 13 34 34 H 1.08997 * 109.46949 * 299.99431 * 16 15 13 35 35 H 1.09004 * 109.47022 * 304.99823 * 17 16 15 36 36 H 1.08996 * 109.46855 * 184.99835 * 17 16 15 37 37 H 1.09000 * 110.56724 * 61.43908 * 19 18 17 38 38 H 1.09004 * 110.68940 * 298.64853 * 19 18 17 39 39 H 1.09002 * 110.52360 * 118.62859 * 20 19 18 40 40 H 1.09002 * 110.51975 * 241.22721 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4743 -6.1500 0.0018 13 6 1.7207 -7.4552 0.0018 14 8 0.5125 -7.4551 0.0018 15 8 2.3918 -8.6176 0.0029 16 6 1.6010 -9.8353 0.0022 17 6 2.5330 -11.0488 0.0029 18 7 3.2924 -11.0804 1.2553 19 6 2.8754 -11.7596 2.4916 20 6 4.0279 -11.4743 3.4738 21 8 4.9664 -10.6739 2.6980 22 6 4.4801 -10.4952 1.4615 23 8 5.0638 -9.8601 0.6057 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 0.8531 -5.0451 -0.8885 30 1 0.8537 -5.0446 0.8913 31 1 3.1009 -6.0918 0.8918 32 1 3.1010 -6.0928 -0.8882 33 1 0.9732 -9.8604 -0.8884 34 1 0.9712 -9.8600 0.8915 35 1 3.2224 -10.9778 -0.8384 36 1 1.9424 -11.9604 -0.0871 37 1 2.7720 -12.8316 2.3234 38 1 1.9413 -11.3399 2.8653 39 1 3.6662 -10.9115 4.3344 40 1 4.4947 -12.4051 3.7959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805695703.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:00 Heat of formation + Delta-G solvation = -198.936207 kcal Electronic energy + Delta-G solvation = -22044.720293 eV Core-core repulsion = 18437.563327 eV Total energy + Delta-G solvation = -3607.156966 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.45623 -41.51754 -38.33211 -38.00595 -36.71585 -36.42436 -34.68237 -32.26667 -31.49937 -29.88390 -27.75335 -25.37375 -24.57316 -24.05293 -22.12548 -21.78939 -21.48552 -18.78539 -18.51881 -18.39506 -18.22745 -17.81837 -17.57312 -17.12129 -16.47841 -16.23174 -15.85024 -15.23102 -15.00126 -14.83452 -14.62431 -14.45108 -14.07640 -13.75295 -13.54462 -13.51348 -13.31356 -13.04534 -12.87461 -12.74438 -12.34670 -12.24294 -12.21322 -11.77869 -11.68829 -11.64604 -11.57375 -11.42415 -11.30872 -11.06087 -10.56276 -9.96438 -8.20069 -6.31687 1.14045 1.39982 1.40644 1.43870 1.54411 1.60652 1.78467 2.41390 2.66044 3.12847 3.38500 3.60106 3.74432 3.84341 3.97976 4.02186 4.03620 4.09286 4.28803 4.44335 4.51974 4.56955 4.58032 4.66667 4.74191 4.79484 4.82768 4.90868 5.10789 5.23090 5.28884 5.36295 5.42810 5.54652 5.75415 5.86450 6.24642 6.35865 6.72150 6.86319 6.99158 7.37822 8.92398 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028779 B = 0.002542 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.699449 B =11014.415483 C =11494.837854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.020 3.980 10 C -0.098 4.098 11 C -0.096 4.096 12 C -0.107 4.107 13 C 0.467 3.533 14 O -0.539 6.539 15 O -0.356 6.356 16 C 0.032 3.968 17 C 0.152 3.848 18 N -0.628 5.628 19 C 0.063 3.937 20 C 0.031 3.969 21 O -0.356 6.356 22 C 0.634 3.366 23 O -0.563 6.563 24 H 0.263 0.737 25 H -0.011 1.011 26 H -0.011 1.011 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.160 0.840 37 H 0.129 0.871 38 H 0.106 0.894 39 H 0.119 0.881 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.152 -32.188 5.892 33.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.081 0.919 9 C -0.017 4.017 10 C -0.135 4.135 11 C -0.134 4.134 12 C -0.144 4.144 13 C 0.312 3.688 14 O -0.430 6.430 15 O -0.273 6.273 16 C -0.042 4.042 17 C 0.032 3.968 18 N -0.376 5.376 19 C -0.059 4.059 20 C -0.042 4.042 21 O -0.267 6.267 22 C 0.388 3.612 23 O -0.450 6.450 24 H 0.072 0.928 25 H 0.007 0.993 26 H 0.007 0.993 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.177 0.823 37 H 0.147 0.853 38 H 0.124 0.876 39 H 0.137 0.863 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.162 -31.744 5.562 32.638 hybrid contribution -0.310 1.108 0.012 1.150 sum 4.852 -30.636 5.574 31.515 Atomic orbital electron populations 1.70130 1.07947 1.27717 1.51918 1.26058 0.95808 1.03624 0.94757 0.85343 0.79098 0.78489 0.77781 1.18393 1.20337 1.20330 1.21774 0.93694 0.92324 1.50226 0.91856 1.19037 0.94567 0.93408 0.94650 1.21454 0.97994 0.92686 1.01405 1.21324 0.97202 0.92873 1.01956 1.21454 0.99009 0.86727 1.07199 1.24097 0.86892 0.86763 0.71052 1.90646 1.16795 1.88468 1.47043 1.86673 1.41775 1.15242 1.83560 1.23916 0.94488 0.81778 1.04057 1.21669 0.94204 0.97244 0.83674 1.48122 1.19704 1.54674 1.15092 1.23182 0.99102 1.01241 0.82338 1.24747 0.87592 0.97468 0.94426 1.87347 1.46615 1.69347 1.23355 1.18841 0.81548 0.78866 0.81936 1.91017 1.64520 1.45160 1.44347 0.92787 0.99287 0.99302 0.92227 0.92112 0.92744 0.92887 0.86565 0.86094 0.88798 0.90437 0.89402 0.82256 0.85277 0.87583 0.86278 0.84785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.12 13.29 21.45 0.28 -58.84 16 2 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 3 Si 0.97 45.53 29.54 68.60 2.03 47.56 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 7 C -0.54 -32.00 9.11 25.60 0.23 -31.77 16 8 H 0.06 3.55 7.74 -2.91 -0.02 3.53 16 9 C 0.02 1.14 4.97 29.85 0.15 1.28 16 10 C -0.10 -4.15 5.15 30.59 0.16 -4.00 16 11 C -0.10 -3.54 4.50 30.59 0.14 -3.40 16 12 C -0.11 -3.13 5.81 29.85 0.17 -2.95 16 13 C 0.47 14.08 7.96 71.24 0.57 14.65 16 14 O -0.54 -18.95 15.73 21.96 0.35 -18.61 16 15 O -0.36 -9.38 9.79 -51.35 -0.50 -9.88 16 16 C 0.03 0.54 5.81 71.98 0.42 0.95 16 17 C 0.15 1.60 6.41 86.38 0.55 2.16 16 18 N -0.63 -8.54 2.93 -951.01 -2.78 -11.32 16 19 C 0.06 0.21 7.70 86.64 0.67 0.88 16 20 C 0.03 0.18 8.22 72.35 0.59 0.77 16 21 O -0.36 -7.15 11.11 -50.08 -0.56 -7.71 16 22 C 0.63 15.10 8.61 129.91 1.12 16.22 16 23 O -0.56 -19.13 17.39 19.65 0.34 -18.79 16 24 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 25 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 26 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 27 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 29 H 0.05 2.12 8.10 -2.39 -0.02 2.10 16 30 H 0.05 2.06 8.10 -2.39 -0.02 2.04 16 31 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.12 3.16 8.14 -2.38 -0.02 3.14 16 33 H 0.09 1.40 8.13 -2.39 -0.02 1.38 16 34 H 0.08 1.21 8.13 -2.39 -0.02 1.19 16 35 H 0.09 1.23 7.93 -2.38 -0.02 1.21 16 36 H 0.16 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.13 -0.44 8.14 -2.39 -0.02 -0.46 16 38 H 0.11 0.10 8.14 -2.38 -0.02 0.08 16 39 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 Total: -1.00 -87.20 346.82 5.41 -81.80 By element: Atomic # 1 Polarization: -0.17 SS G_CDS: 1.02 Total: 0.85 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 5.23 Total: -5.06 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -2.50 Total: -70.16 kcal Atomic # 8 Polarization: -54.62 SS G_CDS: -0.37 Total: -54.99 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -87.20 5.41 -81.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805695703.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.138 kcal (2) G-P(sol) polarization free energy of solvation -87.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds