Wall clock time and date at job start Tue Mar 31 2020 06:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.47422 * 125.52332 * 2 1 4 4 C 1.54095 * 103.61535 * 179.91222 * 3 2 1 5 5 H 1.09002 * 110.51799 * 118.81215 * 4 3 2 6 6 C 1.53000 * 110.52017 * 241.40141 * 4 3 2 7 7 O 1.45197 * 109.46981 * 183.07201 * 6 4 3 8 8 C 1.34236 * 116.99873 * 179.97438 * 7 6 4 9 9 O 1.20823 * 119.99905 * 0.02562 * 8 7 6 10 10 C 1.50702 * 120.00010 * 179.97438 * 8 7 6 11 11 C 1.53003 * 109.46878 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.46838 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.47119 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 O 1.45695 * 104.13418 * 0.10538 * 4 3 2 23 23 C 1.33771 * 109.48147 * 359.93184 * 22 4 3 24 24 O 1.21505 * 123.07470 * 180.02562 * 23 22 4 25 25 H 1.09002 * 109.46818 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47024 * 299.95040 * 1 2 3 27 27 H 1.08999 * 109.47454 * 59.95214 * 1 2 3 28 28 H 1.09000 * 110.60698 * 61.40931 * 3 2 1 29 29 H 1.08998 * 110.66744 * 298.44424 * 3 2 1 30 30 H 1.08999 * 109.46884 * 63.07194 * 6 4 3 31 31 H 1.09004 * 109.47450 * 303.07568 * 6 4 3 32 32 H 1.08998 * 109.46799 * 60.00757 * 10 8 7 33 33 H 1.09002 * 109.46835 * 300.00200 * 10 8 7 34 34 H 1.08998 * 109.46943 * 60.00655 * 11 10 8 35 35 H 1.08994 * 109.47116 * 300.00266 * 11 10 8 36 36 H 1.09004 * 109.46806 * 60.00265 * 12 11 10 37 37 H 1.09000 * 109.47828 * 300.00570 * 12 11 10 38 38 H 1.09004 * 109.47066 * 60.00422 * 13 12 11 39 39 H 1.08994 * 109.47405 * 300.00252 * 13 12 11 40 40 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3216 1.1998 0.0000 4 6 3.7513 0.6249 0.0023 5 1 4.2904 0.9380 -0.8918 6 6 4.5032 1.0623 1.2609 7 8 5.8679 0.5695 1.2052 8 6 6.6668 0.8693 2.2414 9 8 6.2398 1.5214 3.1646 10 6 8.0960 0.3914 2.2538 11 6 8.7810 0.8653 3.5373 12 6 10.2318 0.3796 3.5501 13 6 10.9166 0.8529 4.8338 14 6 12.3459 0.3751 4.8462 15 1 12.7277 -0.2075 4.0208 16 6 13.1679 0.6870 5.9084 17 7 12.7030 1.3967 6.9133 18 14 14.9415 0.1012 5.9201 19 1 15.6537 0.6554 4.7407 20 1 15.6076 0.5646 7.1639 21 1 14.9734 -1.3825 5.8655 22 8 3.5542 -0.8187 0.0007 23 6 2.2443 -1.0901 -0.0005 24 8 1.8016 -2.2217 -0.0015 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5131 0.8905 27 1 -0.3634 0.5146 -0.8895 28 1 2.1471 1.7958 0.8959 29 1 2.1498 1.7952 -0.8967 30 1 4.0056 0.6553 2.1412 31 1 4.5120 2.1507 1.3192 32 1 8.6222 0.7971 1.3897 33 1 8.1153 -0.6976 2.2128 34 1 8.2548 0.4593 4.4011 35 1 8.7616 1.9543 3.5787 36 1 10.7584 0.7852 2.6862 37 1 10.2509 -0.7094 3.5088 38 1 10.3900 0.4469 5.6975 39 1 10.8977 1.9419 4.8755 40 1 13.2812 1.6158 7.6607 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805999778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:28 Heat of formation + Delta-G solvation = -172.608366 kcal Electronic energy + Delta-G solvation = -21561.874777 eV Core-core repulsion = 17955.859472 eV Total energy + Delta-G solvation = -3606.015305 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.09788 -40.51907 -37.83118 -36.71742 -35.97985 -35.00717 -32.73399 -32.11897 -29.97730 -28.47704 -26.54494 -25.53562 -23.26482 -22.71271 -21.52926 -20.63727 -20.04896 -18.20835 -17.70023 -17.47527 -17.29808 -16.71288 -16.17833 -16.01217 -15.49632 -14.92358 -14.66806 -14.48939 -14.40083 -14.15320 -13.37006 -13.19565 -13.02163 -12.86756 -12.61992 -12.60709 -12.28375 -11.76457 -11.68069 -11.15483 -11.08632 -11.01100 -10.97599 -10.62091 -10.59798 -10.47676 -10.44293 -9.65852 -9.54011 -9.29646 -9.03899 -8.31711 -5.96724 -3.99299 1.89342 2.18366 2.25596 2.41083 2.84776 3.35215 3.39543 3.41921 3.53351 3.83521 4.04742 4.36170 4.48138 4.56307 4.61715 4.68002 4.83594 4.88256 5.05784 5.10425 5.21266 5.24994 5.28691 5.38736 5.68846 5.79724 6.03596 6.14916 6.24764 6.44821 6.75043 6.84162 6.92873 7.15147 7.56541 7.68887 7.71433 7.86095 8.03826 8.45607 9.07971 9.64439 11.14532 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.049864 B = 0.002097 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.395778 B =13350.043519 C =13571.259470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.638 5.638 3 C 0.075 3.925 4 C 0.072 3.928 5 H 0.131 0.869 6 C 0.057 3.943 7 O -0.353 6.353 8 C 0.463 3.537 9 O -0.504 6.504 10 C -0.111 4.111 11 C -0.108 4.108 12 C -0.110 4.110 13 C 0.020 3.980 14 C -0.521 4.521 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 O -0.311 6.311 23 C 0.640 3.360 24 O -0.519 6.519 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.650 2.787 -17.242 30.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.387 5.387 3 C -0.048 4.048 4 C 0.016 3.984 5 H 0.149 0.851 6 C -0.017 4.017 7 O -0.270 6.270 8 C 0.306 3.694 9 O -0.391 6.391 10 C -0.149 4.149 11 C -0.146 4.146 12 C -0.148 4.148 13 C -0.017 4.017 14 C -0.560 4.560 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 O -0.221 6.221 23 C 0.394 3.606 24 O -0.404 6.404 25 H 0.108 0.892 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.812 2.308 -16.789 30.047 hybrid contribution 0.806 0.042 0.183 0.827 sum -24.006 2.350 -16.606 29.284 Atomic orbital electron populations 1.21535 0.74578 1.04555 1.02046 1.48028 1.07650 1.05653 1.77377 1.22815 0.87448 0.89197 1.05372 1.23882 0.95867 0.77733 1.00914 0.85144 1.23275 0.80876 1.00261 0.97302 1.86574 1.22493 1.71836 1.46125 1.24304 0.89270 0.76796 0.79009 1.90681 1.75854 1.36720 1.35829 1.21640 0.86539 1.03712 1.02987 1.21586 0.97131 1.01647 0.94241 1.21653 0.92037 0.99860 1.01249 1.19093 0.94674 0.96588 0.91341 1.21239 0.96356 1.33609 1.04773 0.92722 1.25046 0.98603 0.95268 0.95681 1.69964 1.36152 1.38603 1.08759 0.86653 0.84933 0.79119 0.77238 1.20275 1.21332 1.20255 1.87457 1.23078 1.24934 1.86604 1.18593 0.80212 0.85528 0.76260 1.91054 1.73614 1.20615 1.55078 0.89154 0.91404 0.91414 0.88361 0.87857 0.90043 0.88429 0.87692 0.87637 0.91524 0.91525 0.93162 0.93132 0.96547 0.96557 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.47 11.23 59.85 0.67 1.14 16 2 N -0.64 -4.37 3.37 -186.49 -0.63 -5.00 16 3 C 0.08 0.27 7.36 -2.97 -0.02 0.24 16 4 C 0.07 0.45 4.15 -26.16 -0.11 0.34 16 5 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 6 C 0.06 0.46 5.01 37.16 0.19 0.65 16 7 O -0.35 -3.99 10.22 -40.10 -0.41 -4.40 16 8 C 0.46 6.21 7.96 36.01 0.29 6.50 16 9 O -0.50 -8.16 15.73 -18.75 -0.29 -8.45 16 10 C -0.11 -1.44 5.81 -27.88 -0.16 -1.60 16 11 C -0.11 -1.83 4.50 -26.73 -0.12 -1.95 16 12 C -0.11 -2.20 5.15 -26.74 -0.14 -2.34 16 13 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 14 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 18 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 O -0.31 -3.43 10.80 -38.68 -0.42 -3.85 16 23 C 0.64 7.29 8.85 53.71 0.48 7.76 16 24 O -0.52 -7.96 17.31 -19.11 -0.33 -8.29 16 25 H 0.09 0.50 7.53 -51.93 -0.39 0.11 16 26 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.10 0.19 7.73 -51.93 -0.40 -0.21 16 29 H 0.10 0.09 8.14 -51.93 -0.42 -0.34 16 30 H 0.08 0.74 8.13 -51.93 -0.42 0.31 16 31 H 0.10 0.58 8.13 -51.93 -0.42 0.16 16 32 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 35 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 346.34 15.07 5.22 5.22 Total: -1.00 -37.20 346.34 -6.87 -44.07 By element: Atomic # 1 Polarization: -0.73 SS G_CDS: -6.25 Total: -6.98 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 0.52 Total: -2.56 kcal Atomic # 7 Polarization: -31.66 SS G_CDS: 0.11 Total: -31.56 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -1.45 Total: -24.99 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -37.20 -6.87 -44.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805999778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.537 kcal (2) G-P(sol) polarization free energy of solvation -37.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds