Wall clock time and date at job start Tue Mar 31 2020 06:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.47422 * 125.52332 * 2 1 4 4 C 1.54095 * 103.61535 * 179.91222 * 3 2 1 5 5 H 1.09002 * 110.51799 * 118.81215 * 4 3 2 6 6 C 1.53000 * 110.52017 * 241.40141 * 4 3 2 7 7 O 1.45197 * 109.46981 * 183.07201 * 6 4 3 8 8 C 1.34236 * 116.99873 * 179.97438 * 7 6 4 9 9 O 1.20823 * 119.99905 * 0.02562 * 8 7 6 10 10 C 1.50702 * 120.00010 * 179.97438 * 8 7 6 11 11 C 1.53003 * 109.46878 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.46838 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.47119 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 O 1.45695 * 104.13418 * 0.10538 * 4 3 2 23 23 C 1.33771 * 109.48147 * 359.93184 * 22 4 3 24 24 O 1.21505 * 123.07470 * 180.02562 * 23 22 4 25 25 H 1.09002 * 109.46818 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47024 * 299.95040 * 1 2 3 27 27 H 1.08999 * 109.47454 * 59.95214 * 1 2 3 28 28 H 1.09000 * 110.60698 * 61.40931 * 3 2 1 29 29 H 1.08998 * 110.66744 * 298.44424 * 3 2 1 30 30 H 1.08999 * 109.46884 * 63.07194 * 6 4 3 31 31 H 1.09004 * 109.47450 * 303.07568 * 6 4 3 32 32 H 1.08998 * 109.46799 * 60.00757 * 10 8 7 33 33 H 1.09002 * 109.46835 * 300.00200 * 10 8 7 34 34 H 1.08998 * 109.46943 * 60.00655 * 11 10 8 35 35 H 1.08994 * 109.47116 * 300.00266 * 11 10 8 36 36 H 1.09004 * 109.46806 * 60.00265 * 12 11 10 37 37 H 1.09000 * 109.47828 * 300.00570 * 12 11 10 38 38 H 1.09004 * 109.47066 * 60.00422 * 13 12 11 39 39 H 1.08994 * 109.47405 * 300.00252 * 13 12 11 40 40 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3216 1.1998 0.0000 4 6 3.7513 0.6249 0.0023 5 1 4.2904 0.9380 -0.8918 6 6 4.5032 1.0623 1.2609 7 8 5.8679 0.5695 1.2052 8 6 6.6668 0.8693 2.2414 9 8 6.2398 1.5214 3.1646 10 6 8.0960 0.3914 2.2538 11 6 8.7810 0.8653 3.5373 12 6 10.2318 0.3796 3.5501 13 6 10.9166 0.8529 4.8338 14 6 12.3459 0.3751 4.8462 15 1 12.7277 -0.2075 4.0208 16 6 13.1679 0.6870 5.9084 17 7 12.7030 1.3967 6.9133 18 14 14.9415 0.1012 5.9201 19 1 15.6537 0.6554 4.7407 20 1 15.6076 0.5646 7.1639 21 1 14.9734 -1.3825 5.8655 22 8 3.5542 -0.8187 0.0007 23 6 2.2443 -1.0901 -0.0005 24 8 1.8016 -2.2217 -0.0015 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5131 0.8905 27 1 -0.3634 0.5146 -0.8895 28 1 2.1471 1.7958 0.8959 29 1 2.1498 1.7952 -0.8967 30 1 4.0056 0.6553 2.1412 31 1 4.5120 2.1507 1.3192 32 1 8.6222 0.7971 1.3897 33 1 8.1153 -0.6976 2.2128 34 1 8.2548 0.4593 4.4011 35 1 8.7616 1.9543 3.5787 36 1 10.7584 0.7852 2.6862 37 1 10.2509 -0.7094 3.5088 38 1 10.3900 0.4469 5.6975 39 1 10.8977 1.9419 4.8755 40 1 13.2812 1.6158 7.6607 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805999778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:28 Heat of formation + Delta-G solvation = -197.504776 kcal Electronic energy + Delta-G solvation = -21562.954366 eV Core-core repulsion = 17955.859472 eV Total energy + Delta-G solvation = -3607.094895 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.75565 -41.52167 -38.69622 -37.72771 -36.61940 -36.54657 -34.66061 -32.81511 -31.58255 -29.01030 -27.79484 -26.61749 -24.51204 -23.66267 -22.30245 -21.95282 -21.45410 -18.92713 -18.52593 -18.35419 -18.28877 -17.98928 -17.61958 -16.93331 -16.46695 -16.37856 -15.92552 -15.22201 -15.12864 -14.91639 -14.56179 -14.39487 -13.87389 -13.67292 -13.64656 -13.45451 -13.30836 -13.26560 -13.08655 -12.80133 -12.38954 -12.19220 -12.17940 -11.97787 -11.88641 -11.78682 -11.62194 -11.37500 -11.29230 -11.05044 -10.53239 -10.01841 -8.18050 -6.29604 1.14797 1.32224 1.41320 1.44893 1.47574 1.52658 1.61406 2.33776 2.42703 3.07252 3.14791 3.28072 3.61247 3.79936 3.92158 4.01609 4.09733 4.18593 4.24455 4.42641 4.53532 4.58838 4.64660 4.67924 4.79284 4.80184 4.86734 4.88612 5.15597 5.21754 5.29735 5.32809 5.39435 5.57328 5.78893 5.89143 6.19619 6.26437 6.68842 6.82484 6.88623 7.39736 8.93756 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.049864 B = 0.002097 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.395778 B =13350.043519 C =13571.259470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.629 5.629 3 C 0.079 3.921 4 C 0.070 3.930 5 H 0.158 0.842 6 C 0.050 3.950 7 O -0.353 6.353 8 C 0.469 3.531 9 O -0.539 6.539 10 C -0.105 4.105 11 C -0.100 4.100 12 C -0.097 4.097 13 C 0.018 3.982 14 C -0.543 4.543 15 H 0.065 0.935 16 C -0.007 4.007 17 N -0.936 5.936 18 Si 0.968 3.032 19 H -0.264 1.264 20 H -0.285 1.285 21 H -0.266 1.266 22 O -0.340 6.340 23 C 0.630 3.370 24 O -0.577 6.577 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.144 0.856 30 H 0.067 0.933 31 H 0.124 0.876 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.060 0.940 38 H -0.015 1.015 39 H -0.011 1.011 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.671 3.606 -19.390 31.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.378 5.378 3 C -0.042 4.042 4 C 0.015 3.985 5 H 0.175 0.825 6 C -0.024 4.024 7 O -0.270 6.270 8 C 0.314 3.686 9 O -0.429 6.429 10 C -0.142 4.142 11 C -0.138 4.138 12 C -0.135 4.135 13 C -0.019 4.019 14 C -0.581 4.581 15 H 0.084 0.916 16 C -0.204 4.204 17 N -0.577 5.577 18 Si 0.792 3.208 19 H -0.189 1.189 20 H -0.211 1.211 21 H -0.191 1.191 22 O -0.250 6.250 23 C 0.385 3.615 24 O -0.466 6.466 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.114 0.886 28 H 0.138 0.862 29 H 0.162 0.838 30 H 0.085 0.915 31 H 0.142 0.858 32 H 0.152 0.848 33 H 0.141 0.859 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.004 0.996 39 H 0.007 0.993 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.850 3.164 -18.972 31.424 hybrid contribution 0.749 -0.129 0.861 1.148 sum -24.101 3.035 -18.111 30.300 Atomic orbital electron populations 1.21781 0.73054 1.04000 1.04451 1.48229 1.08598 1.05495 1.75430 1.23161 0.84672 0.87944 1.08458 1.24261 0.97709 0.75605 1.00898 0.82496 1.23632 0.79058 1.01787 0.97930 1.86540 1.23924 1.71664 1.44887 1.24247 0.89566 0.75982 0.78823 1.90675 1.76575 1.38453 1.37174 1.21508 0.86435 1.04794 1.01448 1.21350 0.95503 1.00809 0.96099 1.21448 0.93424 1.00349 0.98269 1.19054 0.94556 0.94736 0.93515 1.21735 0.97533 1.33622 1.05168 0.91650 1.26071 1.03787 0.95305 0.95222 1.70116 1.38050 1.39950 1.09558 0.85458 0.78749 0.78972 0.77599 1.18899 1.21094 1.19127 1.87402 1.23168 1.27975 1.86474 1.18846 0.80614 0.85845 0.76238 1.90992 1.74623 1.23054 1.57883 0.91268 0.89343 0.88560 0.86197 0.83831 0.91494 0.85784 0.84846 0.85872 0.93353 0.92641 0.91660 0.92161 0.99610 0.99275 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.69 11.23 127.77 1.43 2.12 16 2 N -0.63 -7.46 3.37 -975.66 -3.29 -10.75 16 3 C 0.08 0.27 7.36 86.57 0.64 0.91 16 4 C 0.07 0.69 4.15 30.96 0.13 0.82 16 5 H 0.16 0.70 8.14 -2.39 -0.02 0.68 16 6 C 0.05 0.70 5.01 71.98 0.36 1.06 16 7 O -0.35 -7.35 10.22 -50.68 -0.52 -7.87 16 8 C 0.47 11.98 7.96 71.24 0.57 12.55 16 9 O -0.54 -17.25 15.73 21.97 0.35 -16.91 16 10 C -0.10 -2.50 5.81 29.85 0.17 -2.32 16 11 C -0.10 -3.35 4.50 30.59 0.14 -3.22 16 12 C -0.10 -3.84 5.15 30.59 0.16 -3.68 16 13 C 0.02 0.99 4.97 29.85 0.15 1.14 16 14 C -0.54 -31.13 9.11 25.60 0.23 -30.89 16 15 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 16 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 17 N -0.94 -58.31 13.29 21.45 0.28 -58.02 16 18 Si 0.97 44.60 29.54 68.60 2.03 46.62 16 19 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 O -0.34 -7.34 10.80 -46.51 -0.50 -7.84 16 23 C 0.63 14.39 8.85 129.91 1.15 15.54 16 24 O -0.58 -18.64 17.31 19.67 0.34 -18.30 16 25 H 0.07 0.77 7.53 -2.39 -0.02 0.75 16 26 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 27 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 28 H 0.12 -0.03 7.73 -2.39 -0.02 -0.05 16 29 H 0.14 -0.54 8.14 -2.39 -0.02 -0.56 16 30 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16 31 H 0.12 1.11 8.13 -2.38 -0.02 1.09 16 32 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 35 H 0.05 1.97 8.10 -2.39 -0.02 1.95 16 36 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 37 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 38 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 39 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 40 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 Total: -1.00 -85.21 346.34 5.30 -79.91 By element: Atomic # 1 Polarization: -1.98 SS G_CDS: 1.02 Total: -0.96 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 5.59 Total: -5.89 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: -3.00 Total: -68.77 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -0.33 Total: -50.91 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -85.21 5.30 -79.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805999778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.596 kcal (2) G-P(sol) polarization free energy of solvation -85.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds