Wall clock time and date at job start Tue Mar 31 2020 06:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.47091 * 125.56341 * 2 1 4 4 C 1.54090 * 103.78058 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.51881 * 241.23173 * 4 3 2 6 6 C 1.53006 * 110.52008 * 118.63096 * 4 3 2 7 7 O 1.45193 * 109.46665 * 175.00331 * 6 4 3 8 8 C 1.34231 * 117.00126 * 179.97438 * 7 6 4 9 9 O 1.20833 * 119.99644 * 0.02562 * 8 7 6 10 10 C 1.50696 * 120.00640 * 179.71955 * 8 7 6 11 11 C 1.52996 * 109.47298 * 180.27355 * 10 8 7 12 12 C 1.53005 * 109.46952 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.46953 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.46969 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00300 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99923 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99871 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99961 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47345 * 59.99934 * 18 16 14 20 20 H 1.48502 * 109.47317 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47211 * 300.00171 * 18 16 14 22 22 O 1.45694 * 104.00678 * 0.02562 * 4 3 2 23 23 C 1.33775 * 109.47741 * 359.97438 * 22 4 3 24 24 O 1.21520 * 123.07197 * 180.02562 * 23 22 4 25 25 H 1.08997 * 109.47153 * 89.99751 * 1 2 3 26 26 H 1.08995 * 109.47532 * 210.00359 * 1 2 3 27 27 H 1.09003 * 109.47046 * 329.99877 * 1 2 3 28 28 H 1.09003 * 110.56292 * 61.38793 * 3 2 1 29 29 H 1.09003 * 110.56416 * 298.54051 * 3 2 1 30 30 H 1.08997 * 109.46911 * 55.00292 * 6 4 3 31 31 H 1.08997 * 109.46745 * 295.00301 * 6 4 3 32 32 H 1.09000 * 109.47190 * 300.28291 * 10 8 7 33 33 H 1.09006 * 109.46468 * 60.27874 * 10 8 7 34 34 H 1.08994 * 109.47515 * 300.00215 * 11 10 8 35 35 H 1.09006 * 109.46938 * 60.00806 * 11 10 8 36 36 H 1.09000 * 109.47278 * 300.00777 * 12 11 10 37 37 H 1.08998 * 109.46882 * 60.00298 * 12 11 10 38 38 H 1.09008 * 109.47282 * 300.00004 * 13 12 11 39 39 H 1.08998 * 109.47408 * 60.00223 * 13 12 11 40 40 H 0.96999 * 119.99800 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3205 1.1965 0.0000 4 6 3.7513 0.6247 0.0007 5 1 4.2881 0.9394 0.8956 6 6 4.5047 1.0630 -1.2569 7 8 5.8825 0.6122 -1.1774 8 6 6.6841 0.9171 -2.2100 9 8 6.2488 1.5405 -3.1491 10 6 8.1286 0.4881 -2.1950 11 6 8.8154 0.9643 -3.4766 12 6 10.2819 0.5280 -3.4616 13 6 10.9688 1.0048 -4.7428 14 6 12.4130 0.5746 -4.7284 15 1 12.8022 0.0172 -3.8891 16 6 13.2377 0.8926 -5.7867 17 7 12.7638 1.5708 -6.8089 18 14 15.0280 0.3599 -5.7685 19 1 15.1031 -1.1210 -5.6875 20 1 15.6948 0.8226 -7.0121 21 1 15.7097 0.9552 -4.5911 22 8 3.5542 -0.8188 0.0003 23 6 2.2443 -1.0901 0.0002 24 8 1.8015 -2.2218 0.0003 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 2.1456 1.7922 0.8959 29 1 2.1465 1.7916 -0.8966 30 1 4.4818 2.1500 -1.3338 31 1 4.0297 0.6265 -2.1355 32 1 8.6286 0.9252 -1.3307 33 1 8.1840 -0.5990 -2.1356 34 1 8.3155 0.5271 -4.3408 35 1 8.7600 2.0513 -3.5361 36 1 10.7821 0.9648 -2.5973 37 1 10.3369 -0.5589 -3.4023 38 1 10.4686 0.5683 -5.6074 39 1 10.9138 2.0918 -4.8018 40 1 13.3440 1.7948 -7.5533 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805999779.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:33 Heat of formation + Delta-G solvation = -172.527750 kcal Electronic energy + Delta-G solvation = -21553.953261 eV Core-core repulsion = 17947.941451 eV Total energy + Delta-G solvation = -3606.011809 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.11058 -40.52062 -37.82177 -36.71937 -36.00314 -35.00742 -32.73469 -32.11617 -29.97858 -28.48518 -26.54732 -25.53880 -23.26913 -22.71204 -21.54467 -20.64401 -20.05013 -18.20839 -17.69994 -17.47245 -17.28451 -16.71237 -16.17930 -16.01967 -15.49697 -14.91781 -14.64346 -14.49367 -14.40393 -14.16404 -13.38166 -13.21328 -13.03999 -12.88687 -12.63072 -12.60003 -12.28420 -11.76557 -11.68139 -11.15383 -11.07273 -11.01101 -10.97766 -10.62147 -10.59870 -10.47767 -10.44367 -9.65950 -9.53117 -9.29737 -9.03968 -8.31765 -5.96768 -3.99361 1.89762 2.18275 2.25446 2.40959 2.84787 3.35152 3.39500 3.41865 3.53451 3.83381 4.03769 4.35441 4.48078 4.55333 4.61007 4.67985 4.83409 4.90510 5.05432 5.10195 5.20999 5.24786 5.28262 5.38679 5.68683 5.79588 6.03480 6.14771 6.24668 6.44711 6.74939 6.84449 6.92778 7.15051 7.56692 7.68746 7.71354 7.86017 8.03768 8.45544 9.07918 9.64383 11.14494 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.050730 B = 0.002089 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.809442 B =13399.950842 C =13613.392296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.637 5.637 3 C 0.074 3.926 4 C 0.073 3.927 5 H 0.131 0.869 6 C 0.057 3.943 7 O -0.353 6.353 8 C 0.463 3.537 9 O -0.504 6.504 10 C -0.111 4.111 11 C -0.108 4.108 12 C -0.110 4.110 13 C 0.020 3.980 14 C -0.521 4.521 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 O -0.312 6.312 23 C 0.640 3.360 24 O -0.518 6.518 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.809 2.448 17.085 30.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.387 5.387 3 C -0.049 4.049 4 C 0.016 3.984 5 H 0.149 0.851 6 C -0.017 4.017 7 O -0.271 6.271 8 C 0.306 3.694 9 O -0.391 6.391 10 C -0.149 4.149 11 C -0.146 4.146 12 C -0.148 4.148 13 C -0.017 4.017 14 C -0.560 4.560 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 O -0.221 6.221 23 C 0.393 3.607 24 O -0.403 6.403 25 H 0.081 0.919 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.976 1.959 16.626 30.068 hybrid contribution 0.812 0.049 -0.185 0.834 sum -24.164 2.008 16.441 29.296 Atomic orbital electron populations 1.21506 0.74530 1.03783 1.02620 1.47961 1.07643 1.05661 1.77409 1.22774 0.87546 0.89256 1.05337 1.23872 0.95822 0.77699 1.00962 0.85100 1.23274 0.80452 1.00697 0.97290 1.86568 1.21492 1.73141 1.45869 1.24301 0.89642 0.76188 0.79245 1.90685 1.76252 1.37304 1.34838 1.21638 0.86138 1.04069 1.03031 1.21588 0.97042 1.01703 0.94279 1.21654 0.91852 1.00016 1.01272 1.19094 0.94648 0.96569 0.91387 1.21238 0.95345 1.35212 1.04184 0.92722 1.25046 0.98650 0.95282 0.95616 1.69962 1.35926 1.39401 1.08187 0.86654 0.85059 0.78997 0.77238 1.20253 1.21332 1.20277 1.87453 1.23104 1.24964 1.86625 1.18598 0.80174 0.85525 0.76356 1.91061 1.73639 1.20632 1.54945 0.91945 0.89928 0.90292 0.87887 0.88405 0.88436 0.90009 0.87686 0.87643 0.91519 0.91525 0.93163 0.93131 0.96546 0.96557 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.48 11.04 59.85 0.66 1.14 16 2 N -0.64 -4.35 3.36 -186.77 -0.63 -4.98 16 3 C 0.07 0.26 7.34 -3.15 -0.02 0.24 16 4 C 0.07 0.45 4.16 -26.16 -0.11 0.34 16 5 H 0.13 0.53 8.14 -51.93 -0.42 0.10 16 6 C 0.06 0.46 5.01 37.16 0.19 0.65 16 7 O -0.35 -3.98 10.22 -39.60 -0.40 -4.39 16 8 C 0.46 6.20 7.96 36.00 0.29 6.49 16 9 O -0.50 -8.16 15.73 -18.76 -0.30 -8.45 16 10 C -0.11 -1.43 5.81 -27.89 -0.16 -1.59 16 11 C -0.11 -1.83 4.50 -26.73 -0.12 -1.95 16 12 C -0.11 -2.20 5.15 -26.73 -0.14 -2.34 16 13 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 14 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 18 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 O -0.31 -3.43 10.80 -38.19 -0.41 -3.85 16 23 C 0.64 7.28 8.85 53.71 0.48 7.76 16 24 O -0.52 -7.97 17.54 -19.12 -0.34 -8.31 16 25 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.08 0.42 7.93 -51.93 -0.41 0.01 16 27 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 28 H 0.10 0.08 8.14 -51.93 -0.42 -0.34 16 29 H 0.10 0.19 7.73 -51.93 -0.40 -0.21 16 30 H 0.10 0.58 8.13 -51.93 -0.42 0.16 16 31 H 0.08 0.75 8.13 -51.93 -0.42 0.32 16 32 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 35 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 346.76 15.07 5.23 5.23 Total: -1.00 -37.25 346.76 -6.90 -44.15 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: -6.27 Total: -7.07 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 0.51 Total: -2.57 kcal Atomic # 7 Polarization: -31.64 SS G_CDS: 0.11 Total: -31.53 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -1.45 Total: -24.99 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -37.25 -6.90 -44.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805999779.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.378 kcal (2) G-P(sol) polarization free energy of solvation -37.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds