Wall clock time and date at job start Tue Mar 31 2020 06:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.47091 * 125.56341 * 2 1 4 4 C 1.54090 * 103.78058 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.51881 * 241.23173 * 4 3 2 6 6 C 1.53006 * 110.52008 * 118.63096 * 4 3 2 7 7 O 1.45193 * 109.46665 * 175.00331 * 6 4 3 8 8 C 1.34231 * 117.00126 * 179.97438 * 7 6 4 9 9 O 1.20833 * 119.99644 * 0.02562 * 8 7 6 10 10 C 1.50696 * 120.00640 * 179.71955 * 8 7 6 11 11 C 1.52996 * 109.47298 * 180.27355 * 10 8 7 12 12 C 1.53005 * 109.46952 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.46953 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.46969 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00300 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99923 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99871 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99961 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47345 * 59.99934 * 18 16 14 20 20 H 1.48502 * 109.47317 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47211 * 300.00171 * 18 16 14 22 22 O 1.45694 * 104.00678 * 0.02562 * 4 3 2 23 23 C 1.33775 * 109.47741 * 359.97438 * 22 4 3 24 24 O 1.21520 * 123.07197 * 180.02562 * 23 22 4 25 25 H 1.08997 * 109.47153 * 89.99751 * 1 2 3 26 26 H 1.08995 * 109.47532 * 210.00359 * 1 2 3 27 27 H 1.09003 * 109.47046 * 329.99877 * 1 2 3 28 28 H 1.09003 * 110.56292 * 61.38793 * 3 2 1 29 29 H 1.09003 * 110.56416 * 298.54051 * 3 2 1 30 30 H 1.08997 * 109.46911 * 55.00292 * 6 4 3 31 31 H 1.08997 * 109.46745 * 295.00301 * 6 4 3 32 32 H 1.09000 * 109.47190 * 300.28291 * 10 8 7 33 33 H 1.09006 * 109.46468 * 60.27874 * 10 8 7 34 34 H 1.08994 * 109.47515 * 300.00215 * 11 10 8 35 35 H 1.09006 * 109.46938 * 60.00806 * 11 10 8 36 36 H 1.09000 * 109.47278 * 300.00777 * 12 11 10 37 37 H 1.08998 * 109.46882 * 60.00298 * 12 11 10 38 38 H 1.09008 * 109.47282 * 300.00004 * 13 12 11 39 39 H 1.08998 * 109.47408 * 60.00223 * 13 12 11 40 40 H 0.96999 * 119.99800 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3205 1.1965 0.0000 4 6 3.7513 0.6247 0.0007 5 1 4.2881 0.9394 0.8956 6 6 4.5047 1.0630 -1.2569 7 8 5.8825 0.6122 -1.1774 8 6 6.6841 0.9171 -2.2100 9 8 6.2488 1.5405 -3.1491 10 6 8.1286 0.4881 -2.1950 11 6 8.8154 0.9643 -3.4766 12 6 10.2819 0.5280 -3.4616 13 6 10.9688 1.0048 -4.7428 14 6 12.4130 0.5746 -4.7284 15 1 12.8022 0.0172 -3.8891 16 6 13.2377 0.8926 -5.7867 17 7 12.7638 1.5708 -6.8089 18 14 15.0280 0.3599 -5.7685 19 1 15.1031 -1.1210 -5.6875 20 1 15.6948 0.8226 -7.0121 21 1 15.7097 0.9552 -4.5911 22 8 3.5542 -0.8188 0.0003 23 6 2.2443 -1.0901 0.0002 24 8 1.8015 -2.2218 0.0003 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 2.1456 1.7922 0.8959 29 1 2.1465 1.7916 -0.8966 30 1 4.4818 2.1500 -1.3338 31 1 4.0297 0.6265 -2.1355 32 1 8.6286 0.9252 -1.3307 33 1 8.1840 -0.5990 -2.1356 34 1 8.3155 0.5271 -4.3408 35 1 8.7600 2.0513 -3.5361 36 1 10.7821 0.9648 -2.5973 37 1 10.3369 -0.5589 -3.4023 38 1 10.4686 0.5683 -5.6074 39 1 10.9138 2.0918 -4.8018 40 1 13.3440 1.7948 -7.5533 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805999779.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:31 Heat of formation + Delta-G solvation = -197.509942 kcal Electronic energy + Delta-G solvation = -21555.036570 eV Core-core repulsion = 17947.941451 eV Total energy + Delta-G solvation = -3607.095119 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.76806 -41.52255 -38.69019 -37.72939 -36.61884 -36.56964 -34.66027 -32.81312 -31.58183 -29.01621 -27.79534 -26.62059 -24.51438 -23.66426 -22.30961 -21.96376 -21.45636 -18.93469 -18.51654 -18.35230 -18.29150 -17.97960 -17.61375 -16.94098 -16.46734 -16.37523 -15.92266 -15.22550 -15.11520 -14.92490 -14.56126 -14.40318 -13.87942 -13.67633 -13.65157 -13.47409 -13.32782 -13.26482 -13.08158 -12.80077 -12.38953 -12.19140 -12.17836 -11.95234 -11.88377 -11.80013 -11.62150 -11.37440 -11.29203 -11.05007 -10.53211 -10.01902 -8.18014 -6.29581 1.14880 1.32800 1.41348 1.44892 1.47140 1.52678 1.60963 2.33810 2.42717 3.07451 3.14823 3.28048 3.61475 3.79823 3.93198 4.01721 4.09780 4.17955 4.24307 4.42479 4.52341 4.57622 4.64709 4.67859 4.79747 4.80249 4.86789 4.89180 5.15644 5.21827 5.29731 5.32865 5.39494 5.57377 5.78937 5.89187 6.19956 6.26466 6.68784 6.82365 6.88673 7.39770 8.93799 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.050730 B = 0.002089 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.809442 B =13399.950842 C =13613.392296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.628 5.628 3 C 0.078 3.922 4 C 0.071 3.929 5 H 0.158 0.842 6 C 0.050 3.950 7 O -0.353 6.353 8 C 0.469 3.531 9 O -0.539 6.539 10 C -0.105 4.105 11 C -0.100 4.100 12 C -0.097 4.097 13 C 0.018 3.982 14 C -0.543 4.543 15 H 0.065 0.935 16 C -0.007 4.007 17 N -0.936 5.936 18 Si 0.968 3.032 19 H -0.266 1.266 20 H -0.285 1.285 21 H -0.264 1.264 22 O -0.341 6.341 23 C 0.630 3.370 24 O -0.576 6.576 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.117 0.883 28 H 0.145 0.855 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.066 0.934 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.060 0.940 38 H -0.015 1.015 39 H -0.011 1.011 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.828 3.316 19.270 31.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.376 5.376 3 C -0.043 4.043 4 C 0.016 3.984 5 H 0.175 0.825 6 C -0.024 4.024 7 O -0.270 6.270 8 C 0.314 3.686 9 O -0.429 6.429 10 C -0.142 4.142 11 C -0.138 4.138 12 C -0.135 4.135 13 C -0.019 4.019 14 C -0.581 4.581 15 H 0.084 0.916 16 C -0.204 4.204 17 N -0.577 5.577 18 Si 0.792 3.208 19 H -0.191 1.191 20 H -0.211 1.211 21 H -0.189 1.189 22 O -0.251 6.251 23 C 0.384 3.616 24 O -0.465 6.465 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.136 0.864 28 H 0.162 0.838 29 H 0.137 0.863 30 H 0.142 0.858 31 H 0.084 0.916 32 H 0.152 0.848 33 H 0.141 0.859 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.004 0.996 39 H 0.007 0.993 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -25.011 2.864 18.845 31.447 hybrid contribution 0.756 -0.142 -0.878 1.167 sum -24.255 2.722 17.968 30.308 Atomic orbital electron populations 1.21760 0.72994 1.04948 1.03341 1.48160 1.08596 1.05479 1.75412 1.23125 0.84752 0.88015 1.08458 1.24251 0.97685 0.75565 1.00935 0.82454 1.23626 0.78631 1.02237 0.97902 1.86535 1.22947 1.72894 1.44634 1.24251 0.89965 0.75364 0.79041 1.90679 1.76962 1.39065 1.36197 1.21506 0.85964 1.05218 1.01483 1.21353 0.95403 1.00886 0.96132 1.21448 0.93254 1.00485 0.98296 1.19055 0.94570 0.94696 0.93544 1.21735 0.96550 1.35180 1.04590 0.91643 1.26070 1.03942 0.95215 0.95155 1.70114 1.37850 1.40705 1.09011 0.85459 0.78747 0.78981 0.77596 1.19119 1.21099 1.18903 1.87397 1.23195 1.28014 1.86486 1.18864 0.80588 0.85855 0.76308 1.90997 1.74657 1.23090 1.57761 0.91480 0.91455 0.86427 0.83754 0.86260 0.85781 0.91555 0.84816 0.85859 0.93365 0.92646 0.91649 0.92156 0.99625 0.99270 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.69 11.04 127.77 1.41 2.11 16 2 N -0.63 -7.41 3.36 -976.52 -3.28 -10.70 16 3 C 0.08 0.26 7.34 86.64 0.64 0.89 16 4 C 0.07 0.69 4.16 30.97 0.13 0.82 16 5 H 0.16 0.70 8.14 -2.39 -0.02 0.68 16 6 C 0.05 0.70 5.01 71.98 0.36 1.06 16 7 O -0.35 -7.31 10.22 -51.09 -0.52 -7.84 16 8 C 0.47 11.96 7.96 71.23 0.57 12.53 16 9 O -0.54 -17.27 15.73 21.94 0.35 -16.93 16 10 C -0.10 -2.49 5.81 29.85 0.17 -2.31 16 11 C -0.10 -3.35 4.50 30.59 0.14 -3.21 16 12 C -0.10 -3.83 5.15 30.59 0.16 -3.67 16 13 C 0.02 0.99 4.97 29.85 0.15 1.14 16 14 C -0.54 -31.11 9.11 25.60 0.23 -30.87 16 15 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 16 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 17 N -0.94 -58.30 13.29 21.45 0.28 -58.01 16 18 Si 0.97 44.58 29.54 68.60 2.03 46.60 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 22 O -0.34 -7.35 10.80 -47.01 -0.51 -7.86 16 23 C 0.63 14.39 8.85 129.91 1.15 15.54 16 24 O -0.58 -18.67 17.54 19.62 0.34 -18.33 16 25 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.07 0.66 7.93 -2.39 -0.02 0.64 16 27 H 0.12 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H 0.14 -0.58 8.14 -2.39 -0.02 -0.60 16 29 H 0.12 -0.04 7.73 -2.39 -0.02 -0.05 16 30 H 0.12 1.11 8.13 -2.39 -0.02 1.09 16 31 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16 32 H 0.13 2.45 8.14 -2.39 -0.02 2.44 16 33 H 0.12 2.55 8.14 -2.38 -0.02 2.53 16 34 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 35 H 0.05 1.96 8.10 -2.38 -0.02 1.94 16 36 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 38 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 39 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 40 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -85.45 346.76 5.27 -80.18 By element: Atomic # 1 Polarization: -2.24 SS G_CDS: 1.02 Total: -1.22 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 5.57 Total: -5.90 kcal Atomic # 7 Polarization: -65.71 SS G_CDS: -3.00 Total: -68.71 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: -0.34 Total: -50.95 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -85.45 5.27 -80.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805999779.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.327 kcal (2) G-P(sol) polarization free energy of solvation -85.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds