Wall clock time and date at job start Tue Mar 31 2020 05:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40072 * 126.03526 * 2 1 4 4 C 1.30839 * 108.23665 * 179.75719 * 3 2 1 5 5 C 1.39857 * 108.21765 * 0.43773 * 4 3 2 6 6 C 1.50707 * 126.05286 * 179.82243 * 5 4 3 7 7 N 1.46902 * 109.46656 * 259.69041 * 6 5 4 8 8 C 1.46906 * 110.99573 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47020 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47381 * 300.00339 * 9 8 7 11 11 C 1.53010 * 109.47013 * 60.00056 * 9 8 7 12 12 C 1.52996 * 109.47077 * 179.97438 * 9 8 7 13 13 C 1.50699 * 109.47047 * 180.02562 * 12 9 8 14 14 H 1.07999 * 120.00136 * 0.02562 * 13 12 9 15 15 C 1.37876 * 120.00116 * 180.02562 * 13 12 9 16 16 N 1.31512 * 120.00112 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00300 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47104 * 60.00043 * 17 15 13 19 19 H 1.48496 * 109.47638 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47155 * 300.00196 * 17 15 13 21 21 C 1.34986 * 126.03461 * 180.02562 * 2 1 3 22 22 Cl 1.73607 * 126.14313 * 359.93751 * 21 2 1 23 23 H 1.09006 * 109.47133 * 269.95571 * 1 2 3 24 24 H 1.09000 * 109.47433 * 29.95717 * 1 2 3 25 25 H 1.09007 * 109.47369 * 149.95960 * 1 2 3 26 26 H 1.08003 * 125.89174 * 180.25670 * 4 3 2 27 27 H 1.08990 * 109.47142 * 139.69025 * 6 5 4 28 28 H 1.09004 * 109.46726 * 19.68923 * 6 5 4 29 29 H 1.00896 * 111.00219 * 303.95295 * 7 6 5 30 30 H 1.09002 * 109.46991 * 299.99841 * 8 7 6 31 31 H 1.09000 * 109.47202 * 60.00133 * 8 7 6 32 32 H 1.09002 * 109.47185 * 59.99218 * 10 9 8 33 33 H 1.08994 * 109.47063 * 180.02562 * 10 9 8 34 34 H 1.09008 * 109.46699 * 300.00074 * 10 9 8 35 35 H 1.08992 * 109.46866 * 59.99807 * 11 9 8 36 36 H 1.09000 * 109.46687 * 179.97438 * 11 9 8 37 37 H 1.09002 * 109.47213 * 300.00043 * 11 9 8 38 38 H 1.08993 * 109.47277 * 299.99937 * 12 9 8 39 39 H 1.09000 * 109.47041 * 60.00238 * 12 9 8 40 40 H 0.96998 * 120.00461 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1327 0.0000 4 6 3.5348 0.7328 0.0053 5 6 3.5450 -0.6657 -0.0014 6 6 4.7700 -1.5437 -0.0023 7 7 5.0271 -2.0239 -1.3666 8 6 6.2170 -2.8845 -1.4062 9 6 6.4517 -3.3645 -2.8398 10 6 5.2333 -4.1565 -3.3185 11 6 6.6656 -2.1561 -3.7537 12 6 7.6914 -4.2602 -2.8812 13 6 7.9230 -4.7325 -4.2934 14 1 7.2532 -4.4243 -5.0826 15 6 8.9899 -5.5582 -4.5780 16 7 9.8052 -5.9340 -3.6170 17 14 9.2765 -6.1442 -6.3284 18 1 9.4840 -4.9713 -7.2154 19 1 10.4790 -7.0145 -6.3685 20 1 8.0940 -6.9130 -6.7929 21 6 2.2591 -1.0916 -0.0005 22 17 1.7277 -2.7443 0.0003 23 1 -0.3634 -0.0008 1.0277 24 1 -0.3634 0.8903 -0.5132 25 1 -0.3634 -0.8897 -0.5145 26 1 4.4051 1.3723 0.0106 27 1 4.6070 -2.3954 0.6580 28 1 5.6280 -0.9706 0.3490 29 1 4.2212 -2.5033 -1.7391 30 1 7.0849 -2.3203 -1.0648 31 1 6.0645 -3.7456 -0.7555 32 1 4.3504 -3.5180 -3.2890 33 1 5.4008 -4.4988 -4.3396 34 1 5.0810 -5.0174 -2.6674 35 1 7.5335 -1.5919 -3.4127 36 1 6.8333 -2.4981 -4.7750 37 1 5.7827 -1.5175 -3.7243 38 1 8.5592 -3.6956 -2.5405 39 1 7.5395 -5.1211 -2.2301 40 1 10.5560 -6.5146 -3.8173 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815141281.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:56 Heat of formation + Delta-G solvation = 38.562568 kcal Electronic energy + Delta-G solvation = -20294.314122 eV Core-core repulsion = 17170.457792 eV Total energy + Delta-G solvation = -3123.856331 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.31649 -39.13006 -37.93537 -36.11841 -34.51738 -33.81193 -31.28823 -29.08708 -28.34392 -27.86007 -26.77122 -25.30334 -23.68899 -22.27430 -21.41568 -19.52587 -18.30061 -18.16671 -16.87000 -16.58154 -16.51829 -15.72711 -15.61764 -15.42890 -14.93231 -14.53448 -14.35863 -14.11530 -13.85678 -13.69507 -13.52388 -13.32252 -13.04550 -12.89056 -12.75051 -12.69938 -12.43832 -12.35994 -12.19565 -12.10597 -11.90559 -11.66780 -11.32881 -10.82792 -10.72292 -10.46793 -10.35247 -9.59966 -9.14994 -8.11000 -6.17633 0.40153 0.56013 1.42528 1.44602 1.51826 1.59561 1.70056 2.46129 3.22832 3.41364 3.57145 4.00031 4.14665 4.24136 4.27157 4.33291 4.39276 4.44278 4.59292 4.63096 4.79535 4.84951 4.86836 4.99696 5.03245 5.11811 5.25129 5.25755 5.48148 5.55545 5.57959 5.62630 5.68407 5.70012 5.91956 5.96590 6.15450 6.41320 6.48018 6.54807 6.97461 7.49390 9.01103 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.032649 B = 0.003276 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.407714 B = 8545.476229 C = 8762.517931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.370 5.370 3 N -0.299 5.299 4 C 0.071 3.929 5 C -0.214 4.214 6 C 0.135 3.865 7 N -0.678 5.678 8 C 0.082 3.918 9 C -0.056 4.056 10 C -0.121 4.121 11 C -0.106 4.106 12 C 0.041 3.959 13 C -0.515 4.515 14 H 0.065 0.935 15 C -0.003 4.003 16 N -0.938 5.938 17 Si 0.954 3.046 18 H -0.269 1.269 19 H -0.288 1.288 20 H -0.269 1.269 21 C 0.118 3.882 22 Cl 0.004 6.996 23 H 0.094 0.906 24 H 0.105 0.895 25 H 0.100 0.900 26 H 0.213 0.787 27 H 0.036 0.964 28 H 0.092 0.908 29 H 0.338 0.662 30 H 0.064 0.936 31 H 0.019 0.981 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.037 0.963 35 H 0.033 0.967 36 H 0.036 0.964 37 H 0.064 0.936 38 H -0.013 1.013 39 H -0.015 1.015 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.640 11.318 9.075 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.155 5.155 3 N -0.122 5.122 4 C -0.114 4.114 5 C -0.227 4.227 6 C 0.006 3.994 7 N -0.310 5.310 8 C -0.047 4.047 9 C -0.056 4.056 10 C -0.179 4.179 11 C -0.163 4.163 12 C 0.004 3.996 13 C -0.553 4.553 14 H 0.083 0.917 15 C -0.200 4.200 16 N -0.579 5.579 17 Si 0.780 3.220 18 H -0.194 1.194 19 H -0.214 1.214 20 H -0.194 1.194 21 C -0.037 4.037 22 Cl 0.032 6.968 23 H 0.112 0.888 24 H 0.124 0.876 25 H 0.119 0.881 26 H 0.230 0.770 27 H 0.054 0.946 28 H 0.110 0.890 29 H 0.157 0.843 30 H 0.083 0.917 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.005 0.995 39 H 0.003 0.997 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.173 12.643 8.923 25.425 hybrid contribution 0.745 -2.342 -0.301 2.476 sum -19.428 10.301 8.622 23.620 Atomic orbital electron populations 1.22276 0.71778 1.06116 1.05161 1.48859 1.08065 1.01831 1.56731 1.77492 1.02334 1.06672 1.25678 1.24122 0.95730 0.93954 0.97577 1.19754 0.92411 0.94844 1.15689 1.20184 0.93994 0.95819 0.89450 1.60590 1.06658 1.42656 1.21070 1.21839 0.93161 0.93906 0.95834 1.20500 0.95582 0.95439 0.94085 1.21675 0.96629 0.98646 1.00934 1.21487 1.00306 0.96293 0.98202 1.18988 0.92247 0.93017 0.95369 1.21606 1.10472 1.27948 0.95256 0.91736 1.25891 0.96230 0.96961 1.00917 1.70095 1.16803 1.36933 1.34067 0.85665 0.77506 0.78398 0.80480 1.19377 1.21371 1.19359 1.21664 0.91603 0.83611 1.06791 1.98423 1.90499 1.10950 1.96922 0.88803 0.87649 0.88110 0.77024 0.94604 0.88995 0.84291 0.91746 0.96301 0.91990 0.93507 0.94421 0.94786 0.94492 0.91709 0.99510 0.99711 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 11.31 127.77 1.44 2.41 16 2 N -0.37 -7.32 4.01 -359.24 -1.44 -8.76 16 3 N -0.30 -6.78 12.57 -57.03 -0.72 -7.50 16 4 C 0.07 1.49 11.96 85.23 1.02 2.51 16 5 C -0.21 -4.78 5.62 -20.11 -0.11 -4.89 16 6 C 0.14 3.16 5.95 85.56 0.51 3.67 16 7 N -0.68 -18.83 5.70 -517.91 -2.95 -21.78 16 8 C 0.08 2.76 4.65 86.30 0.40 3.16 16 9 C -0.06 -2.22 0.60 -52.18 -0.03 -2.25 16 10 C -0.12 -4.46 7.89 71.98 0.57 -3.90 16 11 C -0.11 -4.04 8.06 71.99 0.58 -3.46 16 12 C 0.04 2.14 4.04 29.85 0.12 2.26 16 13 C -0.51 -28.59 7.65 25.60 0.20 -28.39 16 14 H 0.06 3.44 5.68 -2.91 -0.02 3.43 16 15 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 16 N -0.94 -57.45 13.29 21.45 0.28 -57.16 16 17 Si 0.95 44.61 29.54 68.60 2.03 46.64 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 C 0.12 2.50 7.45 83.57 0.62 3.13 16 22 Cl 0.00 0.08 28.53 -2.72 -0.08 0.00 16 23 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 24 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.10 0.86 7.81 -2.38 -0.02 0.84 16 26 H 0.21 3.26 8.06 -2.91 -0.02 3.23 16 27 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 29 H 0.34 9.31 6.76 -89.70 -0.61 8.71 16 30 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 1.90 6.57 -2.39 -0.02 1.89 16 33 H 0.05 1.87 6.62 -2.39 -0.02 1.85 16 34 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.04 1.51 6.61 -2.39 -0.02 1.50 16 37 H 0.06 2.19 7.60 -2.39 -0.02 2.17 16 38 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 39 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 40 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -66.56 341.05 3.33 -63.24 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.43 Total: 10.81 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: 5.78 Total: -25.48 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -4.83 Total: -95.20 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 17 Polarization: 0.08 SS G_CDS: -0.08 Total: 0.00 kcal Total: -66.56 3.33 -63.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815141281.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.800 kcal (2) G-P(sol) polarization free energy of solvation -66.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds