Wall clock time and date at job start Tue Mar 31 2020 05:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46767 * 2 1 4 4 C 1.52995 * 109.47397 * 119.99994 * 2 1 3 5 5 N 1.46904 * 109.46848 * 65.32343 * 4 2 1 6 6 C 1.46899 * 110.99840 * 199.33671 * 5 4 2 7 7 C 1.50701 * 109.47152 * 66.05203 * 6 5 4 8 8 H 1.08008 * 119.99588 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00111 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99833 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 119.99968 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47708 * 89.99751 * 11 9 7 13 13 H 1.48499 * 109.46851 * 210.00111 * 11 9 7 14 14 H 1.48503 * 109.47124 * 329.99600 * 11 9 7 15 15 C 1.46907 * 110.99705 * 75.38655 * 5 4 2 16 16 C 1.50706 * 109.46650 * 191.73219 * 15 5 4 17 17 C 1.39861 * 126.04810 * 254.64151 * 16 15 5 18 18 N 1.30840 * 108.21748 * 179.97438 * 17 16 15 19 19 N 1.40078 * 108.23607 * 359.97438 * 18 17 16 20 20 C 1.46497 * 126.03212 * 179.97438 * 19 18 17 21 21 C 1.34980 * 107.92769 * 359.78068 * 19 18 17 22 22 Cl 1.73603 * 126.14334 * 180.22626 * 21 19 18 23 23 H 1.08997 * 109.46756 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46737 * 299.99620 * 1 2 3 25 25 H 1.08998 * 109.47351 * 59.99859 * 1 2 3 26 26 H 1.09005 * 109.47237 * 240.00457 * 2 1 3 27 27 H 1.09004 * 109.46794 * 184.89566 * 3 2 1 28 28 H 1.09000 * 109.47077 * 304.89518 * 3 2 1 29 29 H 1.09004 * 109.46698 * 64.89643 * 3 2 1 30 30 H 1.08994 * 109.47176 * 305.32838 * 4 2 1 31 31 H 1.08997 * 109.47034 * 185.32280 * 4 2 1 32 32 H 1.09002 * 109.46856 * 186.04813 * 6 5 4 33 33 H 1.09001 * 109.47569 * 306.04524 * 6 5 4 34 34 H 0.96999 * 119.99967 * 180.02562 * 10 9 7 35 35 H 1.09002 * 109.47025 * 311.72954 * 15 5 4 36 36 H 1.08994 * 109.46930 * 71.73342 * 15 5 4 37 37 H 1.08004 * 125.89320 * 359.93195 * 17 16 15 38 38 H 1.08999 * 109.47323 * 89.98757 * 20 19 18 39 39 H 1.09000 * 109.47206 * 209.97992 * 20 19 18 40 40 H 1.09000 * 109.47753 * 329.98148 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6582 -2.1383 1.1866 6 6 1.7088 -2.7565 2.5183 7 6 0.6531 -2.1393 3.3990 8 1 0.0093 -1.3649 3.0086 9 6 0.5092 -2.5631 4.7031 10 7 -0.4118 -2.0241 5.4718 11 14 1.6232 -3.9018 5.3784 12 1 2.8347 -3.2838 5.9746 13 1 0.8967 -4.6717 6.4198 14 1 2.0239 -4.8144 4.2775 15 6 2.5041 -2.8700 0.2341 16 6 1.9114 -4.2319 -0.0208 17 6 2.3925 -5.4458 0.4803 18 7 1.6172 -6.4048 0.0433 19 7 0.6158 -5.8314 -0.7508 20 6 -0.4601 -6.5528 -1.4351 21 6 0.8147 -4.4965 -0.7705 22 17 -0.1579 -3.3287 -1.6097 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5138 -0.8901 27 1 3.1265 1.4439 -0.0877 28 1 1.6068 1.9811 -0.8429 29 1 1.7500 1.9304 0.9306 30 1 1.6010 -0.2655 2.1366 31 1 3.1259 -0.6394 1.2981 32 1 1.5267 -3.8274 2.4288 33 1 2.6919 -2.5907 2.9587 34 1 -0.5128 -2.3220 6.3894 35 1 2.5586 -2.3162 -0.7032 36 1 3.5058 -2.9815 0.6491 37 1 3.2556 -5.5702 1.1176 38 1 -1.3245 -6.6272 -0.7755 39 1 -0.7396 -6.0145 -2.3408 40 1 -0.1167 -7.5532 -1.6984 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816481092.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:00 Heat of formation + Delta-G solvation = 70.771223 kcal Electronic energy + Delta-G solvation = -21330.134888 eV Core-core repulsion = 18207.675230 eV Total energy + Delta-G solvation = -3122.459658 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.06862 -37.49516 -36.55685 -34.28331 -33.14701 -32.27526 -30.27729 -27.96828 -27.22954 -26.57570 -25.13870 -23.42084 -21.11551 -20.73739 -19.99779 -19.01326 -17.01446 -16.68163 -15.63888 -15.13798 -14.72979 -14.37625 -14.29588 -13.68137 -13.51488 -13.39702 -13.00172 -12.81593 -12.43283 -12.32477 -12.19430 -11.89957 -11.74490 -11.69238 -11.57515 -11.14602 -10.97553 -10.69841 -10.56716 -10.40819 -10.28961 -10.10534 -9.79546 -9.68793 -9.17284 -9.08304 -8.50608 -8.14489 -7.24483 -5.98733 -3.94172 1.69590 1.90896 2.84266 2.89704 3.32082 3.40201 3.43265 4.48161 4.53548 4.89904 5.11191 5.17919 5.34206 5.36898 5.41039 5.44261 5.54059 5.57426 5.78393 5.85610 5.98180 6.04774 6.15909 6.24079 6.29717 6.38403 6.51215 6.56671 6.66634 6.71838 6.86181 6.92537 7.01175 7.07311 7.13500 7.71501 7.72327 8.02572 8.18103 8.74687 9.11683 9.64485 11.14487 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.011255 B = 0.008262 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.110963 B = 3388.058278 C = 4956.216379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 C -0.145 4.145 4 C 0.065 3.935 5 N -0.516 5.516 6 C 0.164 3.836 7 C -0.501 4.501 8 H 0.082 0.918 9 C 0.067 3.933 10 N -0.903 5.903 11 Si 0.870 3.130 12 H -0.279 1.279 13 H -0.288 1.288 14 H -0.266 1.266 15 C 0.126 3.874 16 C -0.191 4.191 17 C 0.064 3.936 18 N -0.282 5.282 19 N -0.374 5.374 20 C 0.100 3.900 21 C 0.143 3.857 22 Cl 0.000 7.000 23 H 0.073 0.927 24 H 0.050 0.950 25 H 0.031 0.969 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.018 0.982 32 H 0.030 0.970 33 H -0.020 1.020 34 H 0.261 0.739 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.185 0.815 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.620 -2.952 -15.786 16.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 C -0.203 4.203 4 C -0.063 4.063 5 N -0.240 5.240 6 C 0.037 3.963 7 C -0.540 4.540 8 H 0.100 0.900 9 C -0.133 4.133 10 N -0.542 5.542 11 Si 0.698 3.302 12 H -0.205 1.205 13 H -0.214 1.214 14 H -0.191 1.191 15 C -0.004 4.004 16 C -0.204 4.204 17 C -0.122 4.122 18 N -0.105 5.105 19 N -0.160 5.160 20 C -0.041 4.041 21 C -0.010 4.010 22 Cl 0.028 6.972 23 H 0.092 0.908 24 H 0.069 0.931 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.036 0.964 32 H 0.048 0.952 33 H -0.002 1.002 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.202 0.798 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.620 -4.216 -15.921 16.677 hybrid contribution 1.283 0.183 0.843 1.546 sum 3.903 -4.032 -15.078 16.089 Atomic orbital electron populations 1.21700 0.94812 1.03001 0.99728 1.21077 0.96767 0.94556 0.98290 1.21826 1.00125 0.96923 1.01452 1.22108 0.96428 0.89139 0.98635 1.61932 1.51191 1.01027 1.09812 1.20161 0.95293 0.95614 0.85208 1.21062 1.16607 1.21543 0.94753 0.90029 1.24878 0.95258 0.96276 0.96935 1.69896 1.33691 1.43041 1.07605 0.86930 0.81123 0.83024 0.79124 1.20457 1.21417 1.19051 1.20369 0.93517 0.89196 0.97269 1.19653 0.98871 0.96831 1.04994 1.23690 0.99495 0.89898 0.99117 1.77443 1.00476 1.21284 1.11258 1.48460 1.24166 1.03189 1.40155 1.21859 0.87652 0.97881 0.96757 1.21294 0.95664 0.82764 1.01262 1.98387 1.69480 1.53859 1.75456 0.90837 0.93056 0.94941 0.92255 0.93460 0.93314 0.92631 0.89056 0.96403 0.95182 1.00225 0.92867 0.90895 0.94791 0.79768 0.90427 0.89620 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.08 37.16 0.34 -1.88 16 2 C -0.09 -1.36 2.97 -90.62 -0.27 -1.62 16 3 C -0.15 -1.93 9.19 37.16 0.34 -1.59 16 4 C 0.06 1.20 4.20 -3.82 -0.02 1.18 16 5 N -0.52 -10.26 3.88 -237.51 -0.92 -11.18 16 6 C 0.16 3.89 3.65 -4.98 -0.02 3.88 16 7 C -0.50 -14.05 8.79 -34.44 -0.30 -14.35 16 8 H 0.08 2.48 7.55 -52.48 -0.40 2.09 16 9 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 10 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 11 Si 0.87 21.84 27.47 -169.99 -4.67 17.17 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 15 C 0.13 2.11 5.07 -4.97 -0.03 2.09 16 16 C -0.19 -3.26 4.63 -105.00 -0.49 -3.75 16 17 C 0.06 1.06 11.38 -17.37 -0.20 0.87 16 18 N -0.28 -4.79 12.57 30.62 0.39 -4.40 16 19 N -0.37 -5.75 4.01 -64.91 -0.26 -6.01 16 20 C 0.10 1.05 11.31 59.85 0.68 1.73 16 21 C 0.14 2.33 7.45 -17.16 -0.13 2.20 16 22 Cl 0.00 0.00 27.94 -51.86 -1.45 -1.45 16 23 H 0.07 1.33 7.16 -51.93 -0.37 0.96 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.87 6.62 -51.93 -0.34 0.53 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 1.95 6.58 -51.93 -0.34 1.61 16 31 H 0.02 0.31 8.00 -51.93 -0.42 -0.10 16 32 H 0.03 0.75 5.69 -51.93 -0.30 0.46 16 33 H -0.02 -0.48 7.55 -51.93 -0.39 -0.87 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.07 1.11 6.51 -51.93 -0.34 0.77 16 36 H 0.03 0.55 8.10 -51.93 -0.42 0.13 16 37 H 0.19 2.64 8.06 -52.48 -0.42 2.21 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.73 7.81 -51.93 -0.41 0.32 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 338.71 15.07 5.10 5.10 Total: -1.00 -31.78 338.71 -7.49 -39.27 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -6.27 Total: -2.12 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -0.18 Total: -9.39 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.02 Total: -48.59 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -1.45 Total: -1.45 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.78 -7.49 -39.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816481092.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.045 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds