Wall clock time and date at job start Tue Mar 31 2020 05:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46767 * 2 1 4 4 C 1.52995 * 109.47397 * 119.99994 * 2 1 3 5 5 N 1.46904 * 109.46848 * 65.32343 * 4 2 1 6 6 C 1.46899 * 110.99840 * 199.33671 * 5 4 2 7 7 C 1.50701 * 109.47152 * 66.05203 * 6 5 4 8 8 H 1.08008 * 119.99588 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00111 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99833 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 119.99968 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47708 * 89.99751 * 11 9 7 13 13 H 1.48499 * 109.46851 * 210.00111 * 11 9 7 14 14 H 1.48503 * 109.47124 * 329.99600 * 11 9 7 15 15 C 1.46907 * 110.99705 * 75.38655 * 5 4 2 16 16 C 1.50706 * 109.46650 * 191.73219 * 15 5 4 17 17 C 1.39861 * 126.04810 * 254.64151 * 16 15 5 18 18 N 1.30840 * 108.21748 * 179.97438 * 17 16 15 19 19 N 1.40078 * 108.23607 * 359.97438 * 18 17 16 20 20 C 1.46497 * 126.03212 * 179.97438 * 19 18 17 21 21 C 1.34980 * 107.92769 * 359.78068 * 19 18 17 22 22 Cl 1.73603 * 126.14334 * 180.22626 * 21 19 18 23 23 H 1.08997 * 109.46756 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46737 * 299.99620 * 1 2 3 25 25 H 1.08998 * 109.47351 * 59.99859 * 1 2 3 26 26 H 1.09005 * 109.47237 * 240.00457 * 2 1 3 27 27 H 1.09004 * 109.46794 * 184.89566 * 3 2 1 28 28 H 1.09000 * 109.47077 * 304.89518 * 3 2 1 29 29 H 1.09004 * 109.46698 * 64.89643 * 3 2 1 30 30 H 1.08994 * 109.47176 * 305.32838 * 4 2 1 31 31 H 1.08997 * 109.47034 * 185.32280 * 4 2 1 32 32 H 1.09002 * 109.46856 * 186.04813 * 6 5 4 33 33 H 1.09001 * 109.47569 * 306.04524 * 6 5 4 34 34 H 0.96999 * 119.99967 * 180.02562 * 10 9 7 35 35 H 1.09002 * 109.47025 * 311.72954 * 15 5 4 36 36 H 1.08994 * 109.46930 * 71.73342 * 15 5 4 37 37 H 1.08004 * 125.89320 * 359.93195 * 17 16 15 38 38 H 1.08999 * 109.47323 * 89.98757 * 20 19 18 39 39 H 1.09000 * 109.47206 * 209.97992 * 20 19 18 40 40 H 1.09000 * 109.47753 * 329.98148 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6582 -2.1383 1.1866 6 6 1.7088 -2.7565 2.5183 7 6 0.6531 -2.1393 3.3990 8 1 0.0093 -1.3649 3.0086 9 6 0.5092 -2.5631 4.7031 10 7 -0.4118 -2.0241 5.4718 11 14 1.6232 -3.9018 5.3784 12 1 2.8347 -3.2838 5.9746 13 1 0.8967 -4.6717 6.4198 14 1 2.0239 -4.8144 4.2775 15 6 2.5041 -2.8700 0.2341 16 6 1.9114 -4.2319 -0.0208 17 6 2.3925 -5.4458 0.4803 18 7 1.6172 -6.4048 0.0433 19 7 0.6158 -5.8314 -0.7508 20 6 -0.4601 -6.5528 -1.4351 21 6 0.8147 -4.4965 -0.7705 22 17 -0.1579 -3.3287 -1.6097 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5138 -0.8901 27 1 3.1265 1.4439 -0.0877 28 1 1.6068 1.9811 -0.8429 29 1 1.7500 1.9304 0.9306 30 1 1.6010 -0.2655 2.1366 31 1 3.1259 -0.6394 1.2981 32 1 1.5267 -3.8274 2.4288 33 1 2.6919 -2.5907 2.9587 34 1 -0.5128 -2.3220 6.3894 35 1 2.5586 -2.3162 -0.7032 36 1 3.5058 -2.9815 0.6491 37 1 3.2556 -5.5702 1.1176 38 1 -1.3245 -6.6272 -0.7755 39 1 -0.7396 -6.0145 -2.3408 40 1 -0.1167 -7.5532 -1.6984 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816481092.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:59 Heat of formation + Delta-G solvation = 50.653700 kcal Electronic energy + Delta-G solvation = -21331.007250 eV Core-core repulsion = 18207.675230 eV Total energy + Delta-G solvation = -3123.332020 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.26702 -38.98704 -37.72953 -35.64681 -34.72127 -33.95774 -31.68314 -29.70354 -28.44342 -27.80498 -26.43028 -25.13494 -22.50755 -22.13599 -21.33645 -20.40289 -18.89586 -18.09001 -16.87722 -16.63352 -16.24848 -15.83130 -15.68043 -15.24693 -14.89714 -14.66517 -14.43556 -14.07517 -13.83824 -13.78355 -13.43803 -13.27403 -13.11847 -12.90145 -12.85795 -12.69863 -12.55772 -12.28501 -12.12848 -11.81362 -11.66535 -11.57959 -11.52845 -11.24773 -11.09095 -10.72845 -10.26657 -9.39262 -8.81414 -8.22699 -6.22439 0.50225 0.70981 1.33307 1.36207 1.46196 1.63680 1.79310 2.37193 3.11496 3.42167 3.50300 4.10634 4.14116 4.20712 4.31503 4.34586 4.37623 4.49344 4.59273 4.64830 4.67641 4.85218 4.87013 4.93461 4.98706 5.04582 5.14030 5.20512 5.24385 5.29795 5.40118 5.49849 5.63056 5.66915 5.73714 5.76930 6.11924 6.50457 6.55660 6.79177 6.85331 7.40387 8.93873 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.011255 B = 0.008262 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.110963 B = 3388.058278 C = 4956.216379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.080 4.080 3 C -0.141 4.141 4 C 0.067 3.933 5 N -0.524 5.524 6 C 0.178 3.822 7 C -0.499 4.499 8 H 0.041 0.959 9 C 0.007 3.993 10 N -0.951 5.951 11 Si 0.936 3.064 12 H -0.267 1.267 13 H -0.289 1.289 14 H -0.250 1.250 15 C 0.130 3.870 16 C -0.214 4.214 17 C 0.054 3.946 18 N -0.301 5.301 19 N -0.374 5.374 20 C 0.088 3.912 21 C 0.137 3.863 22 Cl 0.013 6.987 23 H 0.054 0.946 24 H 0.025 0.975 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.031 0.969 32 H 0.024 0.976 33 H -0.018 1.018 34 H 0.263 0.737 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.202 0.798 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.037 -3.730 -17.607 18.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.098 4.098 3 C -0.199 4.199 4 C -0.061 4.061 5 N -0.248 5.248 6 C 0.051 3.949 7 C -0.538 4.538 8 H 0.060 0.940 9 C -0.189 4.189 10 N -0.592 5.592 11 Si 0.761 3.239 12 H -0.192 1.192 13 H -0.215 1.215 14 H -0.174 1.174 15 C 0.001 3.999 16 C -0.227 4.227 17 C -0.131 4.131 18 N -0.124 5.124 19 N -0.159 5.159 20 C -0.051 4.051 21 C -0.018 4.018 22 Cl 0.041 6.959 23 H 0.073 0.927 24 H 0.045 0.955 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.042 0.958 33 H -0.001 1.001 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.063 0.937 37 H 0.218 0.782 38 H 0.100 0.900 39 H 0.125 0.875 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.043 -5.000 -17.777 18.904 hybrid contribution 0.734 0.483 1.311 1.578 sum 4.777 -4.517 -16.466 17.730 Atomic orbital electron populations 1.21648 0.95791 1.01732 0.99693 1.21027 0.95823 0.95845 0.97153 1.21785 1.01188 0.95232 1.01659 1.22073 0.96947 0.88415 0.98624 1.61833 1.52953 1.01789 1.08229 1.19832 0.93510 0.94909 0.86642 1.21300 1.16689 1.20298 0.95465 0.94027 1.25745 0.96883 0.98894 0.97411 1.70054 1.35978 1.45119 1.08089 0.85872 0.79266 0.80147 0.78662 1.19206 1.21476 1.17366 1.20400 0.93323 0.89135 0.97000 1.19791 0.99784 0.97003 1.06088 1.24025 1.00057 0.89725 0.99297 1.77385 1.01176 1.21878 1.11976 1.48828 1.24353 1.03189 1.39574 1.22239 0.86673 0.98894 0.97315 1.21500 0.95676 0.83521 1.01098 1.98389 1.69034 1.53361 1.75069 0.92730 0.95549 0.92429 0.90548 0.91922 0.91367 0.93903 0.93082 0.95057 0.95799 1.00078 0.92846 0.89021 0.93691 0.78151 0.90021 0.87530 0.87245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 9.08 71.98 0.65 -3.59 16 2 C -0.08 -2.33 2.97 -10.79 -0.03 -2.36 16 3 C -0.14 -3.44 9.19 71.98 0.66 -2.78 16 4 C 0.07 2.45 4.20 86.30 0.36 2.81 16 5 N -0.52 -20.49 3.88 -905.35 -3.51 -24.00 16 6 C 0.18 8.43 3.65 85.56 0.31 8.74 16 7 C -0.50 -28.73 8.79 25.60 0.23 -28.51 16 8 H 0.04 2.67 7.55 -2.91 -0.02 2.65 16 9 C 0.01 0.42 5.47 84.65 0.46 0.88 16 10 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 11 Si 0.94 45.12 27.47 68.60 1.88 47.01 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 14 H -0.25 -11.32 6.54 99.48 0.65 -10.67 16 15 C 0.13 4.10 5.07 85.56 0.43 4.54 16 16 C -0.21 -6.94 4.63 -20.11 -0.09 -7.03 16 17 C 0.05 1.71 11.38 85.23 0.97 2.68 16 18 N -0.30 -9.74 12.57 -57.02 -0.72 -10.46 16 19 N -0.37 -10.83 4.01 -359.27 -1.44 -12.27 16 20 C 0.09 1.68 11.31 127.77 1.44 3.12 16 21 C 0.14 4.21 7.45 83.57 0.62 4.83 16 22 Cl 0.01 0.36 27.94 -2.72 -0.08 0.28 16 23 H 0.05 1.96 7.16 -2.39 -0.02 1.94 16 24 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.08 2.01 6.62 -2.38 -0.02 1.99 16 27 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 29 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 2.26 6.58 -2.39 -0.02 2.25 16 31 H 0.03 1.04 8.00 -2.39 -0.02 1.02 16 32 H 0.02 1.17 5.69 -2.39 -0.01 1.16 16 33 H -0.02 -0.86 7.55 -2.39 -0.02 -0.88 16 34 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 35 H 0.09 2.53 6.51 -2.39 -0.02 2.52 16 36 H 0.04 1.33 8.10 -2.39 -0.02 1.31 16 37 H 0.20 5.34 8.06 -2.91 -0.02 5.32 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.11 1.55 7.81 -2.39 -0.02 1.53 16 40 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -69.80 338.71 3.42 -66.38 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.96 Total: 9.71 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: 6.02 Total: -16.66 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -5.37 Total: -106.72 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.01 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -0.08 Total: 0.28 kcal Total: -69.80 3.42 -66.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816481092.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.032 kcal (2) G-P(sol) polarization free energy of solvation -69.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds