Wall clock time and date at job start Tue Mar 31 2020 06:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99933 * 2 1 4 4 H 1.48500 * 109.46961 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47148 * 299.99582 * 3 2 1 6 6 H 1.48500 * 109.47212 * 59.99757 * 3 2 1 7 7 C 1.37871 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00427 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99793 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47153 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47071 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.46950 * 180.02562 * 11 10 9 13 13 C 1.46899 * 111.00029 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47107 * 179.97438 * 13 12 11 15 15 C 1.39237 * 119.53389 * 259.72903 * 14 13 12 16 16 C 1.36147 * 121.05088 * 179.68740 * 15 14 13 17 17 C 1.40559 * 119.77230 * 0.60191 * 16 15 14 18 18 C 1.40541 * 121.26806 * 179.70461 * 17 16 15 19 19 C 1.36102 * 119.65354 * 179.97438 * 18 17 16 20 20 C 1.39357 * 120.97070 * 0.02562 * 19 18 17 21 21 C 1.36135 * 120.97281 * 359.93725 * 20 19 18 22 22 C 1.40409 * 119.66781 * 0.08244 * 21 20 19 23 23 C 1.36636 * 119.53710 * 79.99886 * 14 13 12 24 24 O 1.35802 * 120.22891 * 359.97438 * 23 14 13 25 25 H 0.97005 * 119.99618 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47339 * 60.00089 * 9 7 2 27 27 H 1.09003 * 109.46887 * 299.99757 * 9 7 2 28 28 H 1.09005 * 109.47127 * 59.99583 * 10 9 7 29 29 H 1.09004 * 109.47149 * 300.00087 * 10 9 7 30 30 H 1.08995 * 109.47319 * 59.99998 * 11 10 9 31 31 H 1.09003 * 109.47435 * 299.99322 * 11 10 9 32 32 H 1.00908 * 110.99583 * 303.94989 * 12 11 10 33 33 H 1.09002 * 109.47043 * 299.99792 * 13 12 11 34 34 H 1.09001 * 109.47354 * 59.99854 * 13 12 11 35 35 H 1.07999 * 119.47253 * 359.97438 * 15 14 13 36 36 H 1.08003 * 120.11115 * 180.27494 * 16 15 14 37 37 H 1.08006 * 120.17177 * 359.97438 * 18 17 16 38 38 H 1.08000 * 119.51359 * 180.02562 * 19 18 17 39 39 H 1.08004 * 119.50993 * 179.97438 * 20 19 18 40 40 H 1.08004 * 120.16798 * 180.02562 * 21 20 19 41 41 H 0.96691 * 114.00002 * 90.00169 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9870 0.0025 12 7 2.4348 -6.1036 0.0043 13 6 1.7345 -7.3950 0.0044 14 6 2.7440 -8.5139 0.0057 15 6 3.0443 -9.1687 -1.1858 16 6 3.9559 -10.1794 -1.2213 17 6 4.5986 -10.5814 -0.0377 18 6 5.5400 -11.6249 -0.0370 19 6 6.1431 -11.9871 1.1281 20 6 5.8408 -11.3384 2.3239 21 6 4.9346 -10.3231 2.3605 22 6 4.2920 -9.9222 1.1783 23 6 3.3476 -8.8752 1.1770 24 8 3.0404 -8.2301 2.3319 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6240 -2.5566 0.8903 28 1 2.8713 -3.6039 0.8923 29 1 2.8726 -3.6047 -0.8877 30 1 0.8539 -5.0454 -0.8877 31 1 0.8532 -5.0442 0.8923 32 1 3.0703 -6.0373 -0.7767 33 1 1.1086 -7.4688 0.8937 34 1 1.1106 -7.4700 -0.8863 35 1 2.5496 -8.8671 -2.0972 36 1 4.1806 -10.6739 -2.1548 37 1 5.7837 -12.1367 -0.9564 38 1 6.8665 -12.7890 1.1259 39 1 6.3331 -11.6453 3.2349 40 1 4.7105 -9.8291 3.2944 41 1 2.3052 -8.6257 2.8197 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816548384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:28 Heat of formation + Delta-G solvation = -16.065760 kcal Electronic energy + Delta-G solvation = -20879.184729 eV Core-core repulsion = 17723.099634 eV Total energy + Delta-G solvation = -3156.085094 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.85161 -38.08872 -36.67505 -35.73156 -33.51727 -32.08990 -31.63359 -30.20326 -29.01258 -26.65099 -24.74558 -23.51709 -22.35053 -22.01907 -21.67940 -20.05611 -18.58363 -17.52657 -16.90440 -16.31671 -16.11527 -15.23070 -15.10770 -14.81784 -14.53315 -14.15959 -14.01710 -13.90897 -13.41134 -13.39193 -12.98795 -12.75738 -12.25299 -11.89885 -11.72141 -11.57256 -11.37044 -11.27839 -11.14774 -10.82371 -10.54406 -10.52709 -10.40472 -9.95160 -9.64206 -9.31273 -9.01215 -8.78050 -8.30680 -8.08374 -7.92408 -5.95833 -3.97442 0.30545 0.76062 1.79114 2.72433 3.34241 3.41400 3.46582 3.79453 4.03413 4.41621 4.47282 4.54237 4.63884 4.70413 4.77880 4.93027 5.06777 5.16560 5.21018 5.39758 5.40164 5.44638 5.64800 5.72320 5.84165 5.86263 5.94267 5.98060 6.00821 6.23080 6.33293 6.37408 6.41442 6.54123 6.72883 6.78135 6.82135 7.19528 7.38694 7.59425 7.67943 7.73841 7.88916 8.05209 8.48961 9.10074 9.66381 11.15712 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.031255 B = 0.002519 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.652342 B =11113.058433 C =11339.868265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.106 4.106 11 C 0.060 3.940 12 N -0.679 5.679 13 C 0.105 3.895 14 C -0.110 4.110 15 C -0.091 4.091 16 C -0.121 4.121 17 C -0.039 4.039 18 C -0.111 4.111 19 C -0.114 4.114 20 C -0.125 4.125 21 C -0.092 4.092 22 C -0.078 4.078 23 C 0.145 3.855 24 O -0.476 6.476 25 H 0.259 0.741 26 H 0.013 0.987 27 H 0.016 0.984 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.023 0.977 31 H 0.067 0.933 32 H 0.337 0.663 33 H 0.078 0.922 34 H 0.034 0.966 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.131 0.869 41 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.724 -27.595 0.941 28.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.068 4.068 12 N -0.309 5.309 13 C -0.024 4.024 14 C -0.111 4.111 15 C -0.110 4.110 16 C -0.139 4.139 17 C -0.039 4.039 18 C -0.129 4.129 19 C -0.132 4.132 20 C -0.144 4.144 21 C -0.110 4.110 22 C -0.078 4.078 23 C 0.099 3.901 24 O -0.285 6.285 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.154 0.846 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.148 0.852 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 8.099 -27.077 1.476 28.301 hybrid contribution -0.269 0.645 -0.791 1.055 sum 7.829 -26.432 0.685 27.576 Atomic orbital electron populations 1.69984 1.06051 1.26388 1.51282 1.25036 0.94858 0.99274 0.95453 0.86538 0.80175 0.83803 0.77516 1.19715 1.21077 1.21025 1.21308 0.93119 0.91058 1.49993 0.92616 1.19073 0.94023 0.91408 0.97072 1.21616 0.99158 0.92900 1.00768 1.22136 0.94073 0.90789 0.99784 1.60569 1.20021 1.00483 1.49839 1.20711 0.93247 0.87600 1.00881 1.19936 0.99594 0.98465 0.93134 1.20700 0.97508 0.95531 0.97219 1.20964 0.97442 0.98372 0.97154 1.17980 0.97131 0.96145 0.92689 1.21004 0.96584 0.96741 0.98585 1.20867 0.99730 0.99888 0.92742 1.20854 0.98593 0.96731 0.98173 1.20982 0.96033 0.96469 0.97547 1.18416 0.99080 0.96322 0.94009 1.17903 0.94687 0.90898 0.86563 1.84906 1.55549 1.54405 1.33680 0.93138 0.96842 0.96575 0.92494 0.93727 0.95896 0.91460 0.84597 0.90411 0.94825 0.85670 0.85420 0.85544 0.86053 0.85995 0.85156 0.75878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.31 5.41 -26.73 -0.14 -2.45 16 11 C 0.06 1.09 5.69 -3.82 -0.02 1.06 16 12 N -0.68 -10.64 6.49 -115.05 -0.75 -11.38 16 13 C 0.10 1.34 5.42 -4.98 -0.03 1.31 16 14 C -0.11 -1.32 5.37 -104.83 -0.56 -1.88 16 15 C -0.09 -0.95 9.55 -39.96 -0.38 -1.33 16 16 C -0.12 -1.17 9.77 -39.46 -0.39 -1.56 16 17 C -0.04 -0.42 5.74 -106.84 -0.61 -1.03 16 18 C -0.11 -0.97 9.77 -39.48 -0.39 -1.36 16 19 C -0.11 -0.93 9.95 -39.93 -0.40 -1.32 16 20 C -0.13 -1.08 9.95 -39.92 -0.40 -1.48 16 21 C -0.09 -0.94 9.56 -39.52 -0.38 -1.32 16 22 C -0.08 -0.90 5.75 -106.72 -0.61 -1.52 16 23 C 0.15 1.77 6.65 -39.12 -0.26 1.51 16 24 O -0.48 -5.62 11.87 -19.12 -0.23 -5.84 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.34 5.12 8.72 -39.29 -0.34 4.78 16 33 H 0.08 0.97 7.80 -51.93 -0.40 0.57 16 34 H 0.03 0.40 7.97 -51.93 -0.41 -0.01 16 35 H 0.13 1.09 8.01 -52.49 -0.42 0.67 16 36 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 37 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 40 H 0.13 1.19 7.62 -52.48 -0.40 0.79 16 41 H 0.39 2.72 9.06 45.56 0.41 3.14 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -33.52 346.94 -10.49 -44.01 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.34 Total: 2.46 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -5.12 Total: -24.82 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: -0.01 Total: -38.18 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.23 Total: -5.84 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.52 -10.49 -44.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816548384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.941 kcal (2) G-P(sol) polarization free energy of solvation -33.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds