Wall clock time and date at job start Tue Mar 31 2020 06:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99933 * 2 1 4 4 H 1.48500 * 109.46961 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47148 * 299.99582 * 3 2 1 6 6 H 1.48500 * 109.47212 * 59.99757 * 3 2 1 7 7 C 1.37871 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00427 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99793 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47153 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47071 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.46950 * 180.02562 * 11 10 9 13 13 C 1.46899 * 111.00029 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47107 * 179.97438 * 13 12 11 15 15 C 1.39237 * 119.53389 * 259.72903 * 14 13 12 16 16 C 1.36147 * 121.05088 * 179.68740 * 15 14 13 17 17 C 1.40559 * 119.77230 * 0.60191 * 16 15 14 18 18 C 1.40541 * 121.26806 * 179.70461 * 17 16 15 19 19 C 1.36102 * 119.65354 * 179.97438 * 18 17 16 20 20 C 1.39357 * 120.97070 * 0.02562 * 19 18 17 21 21 C 1.36135 * 120.97281 * 359.93725 * 20 19 18 22 22 C 1.40409 * 119.66781 * 0.08244 * 21 20 19 23 23 C 1.36636 * 119.53710 * 79.99886 * 14 13 12 24 24 O 1.35802 * 120.22891 * 359.97438 * 23 14 13 25 25 H 0.97005 * 119.99618 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47339 * 60.00089 * 9 7 2 27 27 H 1.09003 * 109.46887 * 299.99757 * 9 7 2 28 28 H 1.09005 * 109.47127 * 59.99583 * 10 9 7 29 29 H 1.09004 * 109.47149 * 300.00087 * 10 9 7 30 30 H 1.08995 * 109.47319 * 59.99998 * 11 10 9 31 31 H 1.09003 * 109.47435 * 299.99322 * 11 10 9 32 32 H 1.00908 * 110.99583 * 303.94989 * 12 11 10 33 33 H 1.09002 * 109.47043 * 299.99792 * 13 12 11 34 34 H 1.09001 * 109.47354 * 59.99854 * 13 12 11 35 35 H 1.07999 * 119.47253 * 359.97438 * 15 14 13 36 36 H 1.08003 * 120.11115 * 180.27494 * 16 15 14 37 37 H 1.08006 * 120.17177 * 359.97438 * 18 17 16 38 38 H 1.08000 * 119.51359 * 180.02562 * 19 18 17 39 39 H 1.08004 * 119.50993 * 179.97438 * 20 19 18 40 40 H 1.08004 * 120.16798 * 180.02562 * 21 20 19 41 41 H 0.96691 * 114.00002 * 90.00169 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9870 0.0025 12 7 2.4348 -6.1036 0.0043 13 6 1.7345 -7.3950 0.0044 14 6 2.7440 -8.5139 0.0057 15 6 3.0443 -9.1687 -1.1858 16 6 3.9559 -10.1794 -1.2213 17 6 4.5986 -10.5814 -0.0377 18 6 5.5400 -11.6249 -0.0370 19 6 6.1431 -11.9871 1.1281 20 6 5.8408 -11.3384 2.3239 21 6 4.9346 -10.3231 2.3605 22 6 4.2920 -9.9222 1.1783 23 6 3.3476 -8.8752 1.1770 24 8 3.0404 -8.2301 2.3319 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6240 -2.5566 0.8903 28 1 2.8713 -3.6039 0.8923 29 1 2.8726 -3.6047 -0.8877 30 1 0.8539 -5.0454 -0.8877 31 1 0.8532 -5.0442 0.8923 32 1 3.0703 -6.0373 -0.7767 33 1 1.1086 -7.4688 0.8937 34 1 1.1106 -7.4700 -0.8863 35 1 2.5496 -8.8671 -2.0972 36 1 4.1806 -10.6739 -2.1548 37 1 5.7837 -12.1367 -0.9564 38 1 6.8665 -12.7890 1.1259 39 1 6.3331 -11.6453 3.2349 40 1 4.7105 -9.8291 3.2944 41 1 2.3052 -8.6257 2.8197 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816548384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:28 Heat of formation + Delta-G solvation = -37.570754 kcal Electronic energy + Delta-G solvation = -20880.117255 eV Core-core repulsion = 17723.099634 eV Total energy + Delta-G solvation = -3157.017621 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.60627 -38.90850 -37.77891 -36.82039 -35.39982 -33.44559 -32.66065 -31.36425 -29.88588 -28.24560 -26.12343 -24.27501 -23.97886 -22.80162 -22.61135 -21.85303 -19.37030 -18.51952 -18.25313 -17.69753 -17.08681 -16.57479 -16.42239 -15.95492 -15.57057 -15.36555 -15.32084 -14.69570 -14.47128 -14.29125 -14.15489 -14.10964 -13.54091 -13.45999 -13.13442 -12.72364 -12.63094 -12.55279 -12.41577 -12.26281 -12.05827 -11.85849 -11.55545 -11.42433 -11.31248 -11.08181 -10.68276 -10.56523 -9.56940 -9.31102 -8.67596 -8.21049 -6.31988 -0.42304 0.01100 1.05489 1.39155 1.39775 1.53563 1.99344 2.40607 3.05370 3.11816 3.24958 3.42640 3.67243 3.84651 3.97690 4.10951 4.16518 4.22610 4.33616 4.40571 4.45591 4.50859 4.58382 4.67948 4.71779 4.85838 4.96820 5.00770 5.09402 5.15436 5.22766 5.25854 5.28919 5.50386 5.51420 5.61988 5.65820 5.74226 5.83194 5.85018 6.04485 6.07431 6.26950 6.45057 6.84677 6.87541 7.37125 8.91103 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.031255 B = 0.002519 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.652342 B =11113.058433 C =11339.868265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.026 3.974 10 C -0.092 4.092 11 C 0.075 3.925 12 N -0.684 5.684 13 C 0.108 3.892 14 C -0.123 4.123 15 C -0.103 4.103 16 C -0.117 4.117 17 C -0.057 4.057 18 C -0.115 4.115 19 C -0.116 4.116 20 C -0.123 4.123 21 C -0.114 4.114 22 C -0.099 4.099 23 C 0.131 3.869 24 O -0.494 6.494 25 H 0.264 0.736 26 H -0.007 1.007 27 H -0.008 1.008 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.027 0.973 31 H 0.062 0.938 32 H 0.340 0.660 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.140 0.860 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.131 0.869 41 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.443 -28.879 0.330 30.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.130 4.130 11 C -0.054 4.054 12 N -0.315 5.315 13 C -0.020 4.020 14 C -0.124 4.124 15 C -0.121 4.121 16 C -0.135 4.135 17 C -0.058 4.058 18 C -0.133 4.133 19 C -0.134 4.134 20 C -0.141 4.141 21 C -0.132 4.132 22 C -0.099 4.099 23 C 0.085 3.915 24 O -0.306 6.306 25 H 0.073 0.927 26 H 0.011 0.989 27 H 0.010 0.990 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.158 0.842 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.158 0.842 36 H 0.173 0.827 37 H 0.170 0.830 38 H 0.168 0.832 39 H 0.162 0.838 40 H 0.149 0.851 41 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 9.817 -28.387 0.870 30.049 hybrid contribution -0.776 0.933 -0.558 1.336 sum 9.041 -27.454 0.313 28.905 Atomic orbital electron populations 1.70107 1.07753 1.27732 1.51783 1.26002 0.95837 1.03415 0.94709 0.85375 0.78981 0.78645 0.77906 1.18769 1.20118 1.20241 1.21720 0.93475 0.92485 1.50415 0.92465 1.18967 0.94367 0.92991 0.94830 1.21365 0.98027 0.93136 1.00453 1.21822 0.93848 0.89970 0.99747 1.60482 1.19813 1.01010 1.50205 1.20697 0.93547 0.86422 1.01344 1.19921 0.99981 0.98659 0.93886 1.20880 0.98145 0.95905 0.97171 1.21287 0.96449 0.97796 0.97957 1.18323 0.97911 0.96864 0.92678 1.21357 0.95779 0.96121 1.00035 1.21263 0.99774 1.00184 0.92195 1.21209 0.97626 0.95750 0.99542 1.21120 0.97116 0.97622 0.97353 1.18645 0.99468 0.96696 0.95127 1.18092 0.95300 0.91453 0.86641 1.84841 1.56557 1.55149 1.34039 0.92721 0.98855 0.98996 0.93393 0.93266 0.95530 0.91968 0.84244 0.90496 0.93695 0.84190 0.82709 0.82960 0.83161 0.83788 0.85114 0.74075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.04 13.29 21.45 0.28 -57.76 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.97 45.49 29.54 68.60 2.03 47.51 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.54 -32.19 9.11 25.60 0.23 -31.96 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.03 1.43 4.97 29.85 0.15 1.58 16 10 C -0.09 -4.04 5.41 30.59 0.17 -3.87 16 11 C 0.08 2.72 5.69 86.30 0.49 3.21 16 12 N -0.68 -21.35 6.49 -517.92 -3.36 -24.71 16 13 C 0.11 2.74 5.42 85.56 0.46 3.21 16 14 C -0.12 -2.93 5.37 -20.00 -0.11 -3.03 16 15 C -0.10 -2.02 9.55 22.02 0.21 -1.81 16 16 C -0.12 -2.06 9.77 22.35 0.22 -1.84 16 17 C -0.06 -1.15 5.74 -21.30 -0.12 -1.27 16 18 C -0.12 -1.73 9.77 22.33 0.22 -1.51 16 19 C -0.12 -1.57 9.95 22.04 0.22 -1.35 16 20 C -0.12 -1.91 9.95 22.05 0.22 -1.69 16 21 C -0.11 -2.27 9.56 22.31 0.21 -2.06 16 22 C -0.10 -2.27 5.75 -21.23 -0.12 -2.39 16 23 C 0.13 3.22 6.65 22.57 0.15 3.37 16 24 O -0.49 -11.98 11.87 -91.33 -1.08 -13.07 16 25 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 26 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 27 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 28 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 29 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.34 10.19 8.72 -89.69 -0.78 9.41 16 33 H 0.08 1.93 7.80 -2.39 -0.02 1.91 16 34 H 0.04 1.04 7.97 -2.39 -0.02 1.02 16 35 H 0.14 2.22 8.01 -2.91 -0.02 2.20 16 36 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 38 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 39 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.13 2.43 7.62 -2.91 -0.02 2.41 16 41 H 0.40 6.00 9.06 -74.06 -0.67 5.33 16 Total: -1.00 -72.33 346.94 0.51 -71.82 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -0.42 Total: 17.27 kcal Atomic # 6 Polarization: -44.14 SS G_CDS: 3.06 Total: -41.08 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -3.08 Total: -82.46 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -1.08 Total: -13.07 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -72.33 0.51 -71.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816548384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.253 kcal (2) G-P(sol) polarization free energy of solvation -72.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds