Wall clock time and date at job start Tue Mar 31 2020 06:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99713 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47196 * 120.00210 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.46897 * 180.02562 * 10 9 7 12 12 C 1.46898 * 110.99888 * 179.97438 * 11 10 9 13 13 C 1.53007 * 109.46764 * 179.97438 * 12 11 10 14 14 H 1.08997 * 109.46954 * 60.00063 * 13 12 11 15 15 O 1.42901 * 109.46899 * 300.00044 * 13 12 11 16 16 C 1.50699 * 109.46751 * 180.02562 * 13 12 11 17 17 C 1.36126 * 120.17493 * 95.00052 * 16 13 12 18 18 C 1.39334 * 120.98626 * 179.97438 * 17 16 13 19 19 C 1.36129 * 120.98997 * 0.02562 * 18 17 16 20 20 C 1.40493 * 119.65469 * 0.02562 * 19 18 17 21 21 C 1.40549 * 121.29245 * 180.02562 * 20 19 18 22 22 C 1.36100 * 119.65173 * 179.18137 * 21 20 19 23 23 C 1.39376 * 120.99170 * 0.81961 * 22 21 20 24 24 C 1.36087 * 120.99482 * 359.43582 * 23 22 21 25 25 C 1.40506 * 120.17096 * 274.71833 * 16 13 12 26 26 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 28 28 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 29 29 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 30 30 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 31 31 H 1.00902 * 110.99923 * 303.95801 * 11 10 9 32 32 H 1.08995 * 109.47296 * 299.99911 * 12 11 10 33 33 H 1.08997 * 109.47334 * 60.00212 * 12 11 10 34 34 H 0.96699 * 113.99871 * 299.99272 * 15 13 12 35 35 H 1.08003 * 119.50380 * 359.95658 * 17 16 13 36 36 H 1.07997 * 119.50496 * 179.97438 * 18 17 16 37 37 H 1.08005 * 120.16960 * 180.02562 * 19 18 17 38 38 H 1.08001 * 120.17156 * 359.94979 * 21 20 19 39 39 H 1.08000 * 119.49712 * 180.27494 * 22 21 20 40 40 H 1.07998 * 119.50433 * 179.45058 * 23 22 21 41 41 H 1.08001 * 120.17550 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 7 1.5107 -4.9343 0.0033 12 6 2.4352 -6.0759 0.0037 13 6 1.6351 -7.3801 0.0048 14 1 1.0068 -7.4216 -0.8849 15 8 0.8123 -7.4330 1.1720 16 6 2.5835 -8.5512 0.0059 17 6 2.9344 -9.1465 1.1787 18 6 3.8095 -10.2305 1.1993 19 6 4.3393 -10.7256 0.0472 20 6 4.0012 -10.1366 -1.1827 21 6 4.5275 -10.6202 -2.3929 22 6 4.1644 -10.0349 -3.5667 23 6 3.2897 -8.9500 -3.5872 24 6 2.7644 -8.4514 -2.4351 25 6 3.1055 -9.0382 -1.2043 26 1 -0.4851 0.8400 -0.0004 27 1 0.6240 -2.5576 -0.8880 28 1 0.6247 -2.5563 0.8920 29 1 2.8719 -3.6036 0.8927 30 1 2.8719 -3.6052 -0.8873 31 1 0.8740 -4.9839 0.7844 32 1 3.0631 -6.0353 -0.8863 33 1 3.0632 -6.0346 0.8936 34 1 1.3058 -7.4004 2.0029 35 1 2.5287 -8.7726 2.1072 36 1 4.0720 -10.6843 2.1435 37 1 5.0160 -11.5668 0.0785 38 1 5.2069 -11.4598 -2.3923 39 1 4.5669 -10.4114 -4.4955 40 1 3.0246 -8.4983 -4.5317 41 1 2.0881 -7.6099 -2.4663 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819221391.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:25 Heat of formation + Delta-G solvation = -18.642366 kcal Electronic energy + Delta-G solvation = -21284.937285 eV Core-core repulsion = 18128.740460 eV Total energy + Delta-G solvation = -3156.196824 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.81553 -38.15578 -36.39504 -35.22521 -33.27546 -32.77918 -30.57590 -30.11256 -29.34223 -27.06297 -24.28600 -23.45176 -23.13624 -22.27673 -20.96352 -20.36915 -17.69670 -17.64602 -16.89746 -16.29693 -16.05484 -15.63096 -14.94426 -14.63185 -14.43003 -14.09340 -13.98980 -13.86914 -13.52182 -13.33759 -13.00544 -12.61158 -12.20459 -12.07566 -12.03636 -11.79439 -11.45476 -11.16849 -11.03644 -10.93639 -10.86775 -10.60476 -10.22983 -10.03456 -9.92323 -9.33397 -9.14831 -8.80055 -8.34171 -8.03005 -7.84384 -5.98468 -4.01407 0.32446 0.82846 1.84549 2.80117 3.34026 3.38386 3.40688 3.88680 4.20456 4.31487 4.45565 4.54460 4.61375 4.70856 4.81513 4.91679 5.02625 5.13283 5.20939 5.21427 5.28633 5.30347 5.37188 5.53182 5.71553 5.83016 5.84724 5.96514 6.04214 6.06833 6.25597 6.32000 6.34902 6.39342 6.46642 6.63501 6.81348 6.97434 7.43477 7.52560 7.73677 7.83197 7.97224 8.09656 8.44280 9.05661 9.62223 11.12897 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.023493 B = 0.003005 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.567559 B = 9314.686440 C = 9886.370559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.026 3.974 10 C 0.066 3.934 11 N -0.687 5.687 12 C 0.034 3.966 13 C 0.147 3.853 14 H 0.118 0.882 15 O -0.549 6.549 16 C -0.095 4.095 17 C -0.113 4.113 18 C -0.111 4.111 19 C -0.112 4.112 20 C -0.051 4.051 21 C -0.111 4.111 22 C -0.115 4.115 23 C -0.117 4.117 24 C -0.104 4.104 25 C -0.042 4.042 26 H 0.261 0.739 27 H 0.026 0.974 28 H 0.014 0.986 29 H 0.014 0.986 30 H 0.057 0.943 31 H 0.343 0.657 32 H 0.078 0.922 33 H 0.026 0.974 34 H 0.370 0.630 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.525 -24.180 -1.556 25.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.062 4.062 11 N -0.319 5.319 12 C -0.096 4.096 13 C 0.087 3.913 14 H 0.136 0.864 15 O -0.354 6.354 16 C -0.096 4.096 17 C -0.131 4.131 18 C -0.129 4.129 19 C -0.130 4.130 20 C -0.051 4.051 21 C -0.129 4.129 22 C -0.133 4.133 23 C -0.135 4.135 24 C -0.122 4.122 25 C -0.042 4.042 26 H 0.071 0.929 27 H 0.044 0.956 28 H 0.032 0.968 29 H 0.033 0.967 30 H 0.076 0.924 31 H 0.162 0.838 32 H 0.096 0.904 33 H 0.045 0.955 34 H 0.217 0.783 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.809 -24.083 -2.684 25.460 hybrid contribution 1.389 0.959 1.299 2.130 sum 9.198 -23.125 -1.385 24.925 Atomic orbital electron populations 1.69963 1.06022 1.26719 1.50484 1.25002 0.94846 0.99198 0.95288 0.86645 0.79562 0.83118 0.78584 1.20222 1.21247 1.20301 1.21141 0.92928 0.91050 1.51099 0.92846 1.19058 0.93981 0.90307 0.97799 1.22177 0.97009 0.88458 0.98566 1.60518 1.19302 1.01582 1.50462 1.22564 0.94856 0.91001 1.01180 1.20944 0.90628 0.89833 0.89865 0.86402 1.86681 1.36579 1.96499 1.15626 1.20469 0.98315 0.97833 0.92949 1.20583 0.98163 0.96682 0.97697 1.20797 0.97162 0.96550 0.98389 1.21004 1.00278 0.99954 0.91723 1.18082 0.97245 0.95746 0.94001 1.21002 1.00049 1.00104 0.91725 1.20886 0.97916 0.96383 0.98105 1.20903 0.97411 0.96576 0.98574 1.21225 0.99722 0.99664 0.91574 1.17869 0.97376 0.95728 0.93240 0.92910 0.95594 0.96755 0.96745 0.92424 0.83840 0.90368 0.95540 0.78268 0.85958 0.85895 0.85668 0.85702 0.86009 0.85722 0.84804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.18 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.69 5.23 -27.88 -0.15 0.54 16 10 C 0.07 1.41 5.62 -3.82 -0.02 1.39 16 11 N -0.69 -12.39 6.50 -113.78 -0.74 -13.13 16 12 C 0.03 0.50 5.37 -3.82 -0.02 0.48 16 13 C 0.15 1.87 2.89 -27.88 -0.08 1.79 16 14 H 0.12 1.58 6.69 -51.93 -0.35 1.24 16 15 O -0.55 -6.97 12.32 -35.23 -0.43 -7.40 16 16 C -0.09 -1.12 5.08 -104.53 -0.53 -1.65 16 17 C -0.11 -1.17 9.24 -39.93 -0.37 -1.54 16 18 C -0.11 -1.02 9.95 -39.93 -0.40 -1.42 16 19 C -0.11 -1.05 9.77 -39.49 -0.39 -1.43 16 20 C -0.05 -0.56 5.74 -106.84 -0.61 -1.17 16 21 C -0.11 -1.03 9.77 -39.48 -0.39 -1.41 16 22 C -0.11 -1.03 9.95 -39.93 -0.40 -1.43 16 23 C -0.12 -1.16 9.95 -39.93 -0.40 -1.56 16 24 C -0.10 -1.19 9.22 -39.48 -0.36 -1.55 16 25 C -0.04 -0.51 5.74 -106.83 -0.61 -1.12 16 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.34 6.16 8.12 -39.29 -0.32 5.84 16 32 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 33 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.37 3.46 7.31 45.56 0.33 3.79 16 35 H 0.12 1.01 6.34 -52.48 -0.33 0.68 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 38 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.13 1.50 6.48 -52.49 -0.34 1.16 16 LS Contribution 341.12 15.07 5.14 5.14 Total: -1.00 -32.43 341.12 -10.65 -43.07 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.20 Total: 5.81 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -5.13 Total: -23.85 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.00 Total: -39.58 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.43 Total: -7.40 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.43 -10.65 -43.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819221391.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.429 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds