Wall clock time and date at job start Tue Mar 31 2020 06:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99713 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47196 * 120.00210 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.46897 * 180.02562 * 10 9 7 12 12 C 1.46898 * 110.99888 * 179.97438 * 11 10 9 13 13 C 1.53007 * 109.46764 * 179.97438 * 12 11 10 14 14 H 1.08997 * 109.46954 * 60.00063 * 13 12 11 15 15 O 1.42901 * 109.46899 * 300.00044 * 13 12 11 16 16 C 1.50699 * 109.46751 * 180.02562 * 13 12 11 17 17 C 1.36126 * 120.17493 * 95.00052 * 16 13 12 18 18 C 1.39334 * 120.98626 * 179.97438 * 17 16 13 19 19 C 1.36129 * 120.98997 * 0.02562 * 18 17 16 20 20 C 1.40493 * 119.65469 * 0.02562 * 19 18 17 21 21 C 1.40549 * 121.29245 * 180.02562 * 20 19 18 22 22 C 1.36100 * 119.65173 * 179.18137 * 21 20 19 23 23 C 1.39376 * 120.99170 * 0.81961 * 22 21 20 24 24 C 1.36087 * 120.99482 * 359.43582 * 23 22 21 25 25 C 1.40506 * 120.17096 * 274.71833 * 16 13 12 26 26 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 28 28 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 29 29 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 30 30 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 31 31 H 1.00902 * 110.99923 * 303.95801 * 11 10 9 32 32 H 1.08995 * 109.47296 * 299.99911 * 12 11 10 33 33 H 1.08997 * 109.47334 * 60.00212 * 12 11 10 34 34 H 0.96699 * 113.99871 * 299.99272 * 15 13 12 35 35 H 1.08003 * 119.50380 * 359.95658 * 17 16 13 36 36 H 1.07997 * 119.50496 * 179.97438 * 18 17 16 37 37 H 1.08005 * 120.16960 * 180.02562 * 19 18 17 38 38 H 1.08001 * 120.17156 * 359.94979 * 21 20 19 39 39 H 1.08000 * 119.49712 * 180.27494 * 22 21 20 40 40 H 1.07998 * 119.50433 * 179.45058 * 23 22 21 41 41 H 1.08001 * 120.17550 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 7 1.5107 -4.9343 0.0033 12 6 2.4352 -6.0759 0.0037 13 6 1.6351 -7.3801 0.0048 14 1 1.0068 -7.4216 -0.8849 15 8 0.8123 -7.4330 1.1720 16 6 2.5835 -8.5512 0.0059 17 6 2.9344 -9.1465 1.1787 18 6 3.8095 -10.2305 1.1993 19 6 4.3393 -10.7256 0.0472 20 6 4.0012 -10.1366 -1.1827 21 6 4.5275 -10.6202 -2.3929 22 6 4.1644 -10.0349 -3.5667 23 6 3.2897 -8.9500 -3.5872 24 6 2.7644 -8.4514 -2.4351 25 6 3.1055 -9.0382 -1.2043 26 1 -0.4851 0.8400 -0.0004 27 1 0.6240 -2.5576 -0.8880 28 1 0.6247 -2.5563 0.8920 29 1 2.8719 -3.6036 0.8927 30 1 2.8719 -3.6052 -0.8873 31 1 0.8740 -4.9839 0.7844 32 1 3.0631 -6.0353 -0.8863 33 1 3.0632 -6.0346 0.8936 34 1 1.3058 -7.4004 2.0029 35 1 2.5287 -8.7726 2.1072 36 1 4.0720 -10.6843 2.1435 37 1 5.0160 -11.5668 0.0785 38 1 5.2069 -11.4598 -2.3923 39 1 4.5669 -10.4114 -4.4955 40 1 3.0246 -8.4983 -4.5317 41 1 2.0881 -7.6099 -2.4663 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819221391.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:25 Heat of formation + Delta-G solvation = -39.613063 kcal Electronic energy + Delta-G solvation = -21285.846642 eV Core-core repulsion = 18128.740460 eV Total energy + Delta-G solvation = -3157.106182 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.59204 -39.16053 -37.32525 -36.64418 -34.92550 -34.00228 -31.82830 -31.18884 -30.34174 -28.43637 -26.00522 -24.34769 -23.88769 -23.45074 -22.54667 -21.57350 -18.64486 -18.42639 -18.35628 -17.72874 -17.24487 -16.59098 -16.48593 -15.90402 -15.69114 -15.26253 -14.96155 -14.80198 -14.50910 -14.34036 -14.24589 -13.98348 -13.71369 -13.49090 -12.95571 -12.85436 -12.82630 -12.67768 -12.47230 -12.20420 -11.97643 -11.87992 -11.76554 -11.55792 -11.37199 -11.01105 -10.71379 -10.57091 -9.54810 -9.34363 -8.78884 -8.20907 -6.33184 -0.42534 0.08023 1.07499 1.39811 1.43385 1.51435 2.07506 2.39925 3.03530 3.12184 3.22697 3.39417 3.69948 3.86236 3.89498 3.99750 4.06081 4.12991 4.17208 4.33905 4.44261 4.47578 4.49202 4.55555 4.62556 4.67825 4.75428 4.90591 5.03153 5.05435 5.21823 5.29353 5.34515 5.41875 5.50545 5.61705 5.64536 5.69651 5.75891 5.90784 6.08850 6.10029 6.22834 6.49028 6.68845 6.83806 7.36180 8.91135 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.023493 B = 0.003005 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.567559 B = 9314.686440 C = 9886.370559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.061 0.939 9 C 0.033 3.967 10 C 0.084 3.916 11 N -0.693 5.693 12 C 0.041 3.959 13 C 0.161 3.839 14 H 0.103 0.897 15 O -0.561 6.561 16 C -0.117 4.117 17 C -0.114 4.114 18 C -0.120 4.120 19 C -0.109 4.109 20 C -0.073 4.073 21 C -0.110 4.110 22 C -0.123 4.123 23 C -0.119 4.119 24 C -0.131 4.131 25 C -0.061 4.061 26 H 0.265 0.735 27 H -0.006 1.006 28 H -0.009 1.009 29 H 0.020 0.980 30 H 0.057 0.943 31 H 0.344 0.656 32 H 0.074 0.926 33 H 0.036 0.964 34 H 0.384 0.616 35 H 0.139 0.861 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.149 0.851 40 H 0.138 0.862 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.736 -25.442 -1.231 27.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.586 4.586 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.045 4.045 11 N -0.325 5.325 12 C -0.088 4.088 13 C 0.101 3.899 14 H 0.121 0.879 15 O -0.368 6.368 16 C -0.118 4.118 17 C -0.131 4.131 18 C -0.138 4.138 19 C -0.126 4.126 20 C -0.073 4.073 21 C -0.128 4.128 22 C -0.140 4.140 23 C -0.137 4.137 24 C -0.149 4.149 25 C -0.061 4.061 26 H 0.073 0.927 27 H 0.012 0.988 28 H 0.010 0.990 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.162 0.838 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.234 0.766 35 H 0.157 0.843 36 H 0.168 0.832 37 H 0.172 0.828 38 H 0.171 0.829 39 H 0.167 0.833 40 H 0.156 0.844 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.033 -25.368 -2.351 27.381 hybrid contribution 0.690 1.249 1.192 1.859 sum 10.722 -24.119 -1.159 26.420 Atomic orbital electron populations 1.70106 1.07874 1.27947 1.51220 1.26001 0.95785 1.03454 0.94528 0.85454 0.78232 0.77835 0.79235 1.19128 1.20731 1.19043 1.21586 0.93542 0.92240 1.51240 0.92107 1.18907 0.94262 0.92246 0.95071 1.21792 0.95607 0.88333 0.98719 1.60399 1.19939 1.01424 1.50713 1.22558 0.94473 0.90433 1.01355 1.20628 0.90323 0.89462 0.89455 0.87900 1.86646 1.37306 1.96481 1.16392 1.20344 0.99376 0.98277 0.93806 1.20905 0.97803 0.96690 0.97752 1.21138 0.96719 0.96197 0.99698 1.21392 0.99955 1.00191 0.91085 1.18428 0.97528 0.95835 0.95514 1.21377 0.99783 1.00471 0.91121 1.21216 0.97540 0.95908 0.99376 1.21189 0.97088 0.96787 0.98635 1.21266 1.00878 1.00334 0.92419 1.18088 0.98099 0.96563 0.93361 0.92674 0.98786 0.99036 0.96219 0.92481 0.83785 0.90737 0.94567 0.76608 0.84336 0.83159 0.82845 0.82887 0.83348 0.84409 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 2 C 0.00 0.02 5.46 84.65 0.46 0.49 16 3 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.55 -31.90 9.11 25.60 0.23 -31.67 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.79 5.23 29.85 0.16 1.95 16 10 C 0.08 3.66 5.62 86.30 0.49 4.15 16 11 N -0.69 -25.61 6.50 -513.88 -3.34 -28.95 16 12 C 0.04 1.21 5.37 86.31 0.46 1.68 16 13 C 0.16 4.18 2.89 29.85 0.09 4.26 16 14 H 0.10 2.95 6.69 -2.39 -0.02 2.93 16 15 O -0.56 -14.21 12.32 -148.98 -1.84 -16.04 16 16 C -0.12 -2.75 5.08 -19.80 -0.10 -2.85 16 17 C -0.11 -2.18 9.24 22.04 0.20 -1.98 16 18 C -0.12 -1.91 9.95 22.04 0.22 -1.69 16 19 C -0.11 -1.76 9.77 22.33 0.22 -1.54 16 20 C -0.07 -1.49 5.74 -21.30 -0.12 -1.61 16 21 C -0.11 -1.79 9.77 22.34 0.22 -1.58 16 22 C -0.12 -1.99 9.95 22.05 0.22 -1.77 16 23 C -0.12 -2.33 9.95 22.04 0.22 -2.11 16 24 C -0.13 -3.10 9.22 22.33 0.21 -2.89 16 25 C -0.06 -1.47 5.74 -21.30 -0.12 -1.59 16 26 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 27 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 28 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 29 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.34 12.64 8.12 -89.69 -0.73 11.92 16 32 H 0.07 2.24 8.08 -2.39 -0.02 2.22 16 33 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.38 6.89 7.31 -74.06 -0.54 6.35 16 35 H 0.14 2.05 6.34 -2.91 -0.02 2.03 16 36 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 37 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 39 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 40 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 41 H 0.12 3.01 6.48 -2.91 -0.02 2.99 16 Total: -1.00 -70.74 341.12 -0.05 -70.79 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -0.23 Total: 23.77 kcal Atomic # 6 Polarization: -41.81 SS G_CDS: 3.05 Total: -38.76 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -3.06 Total: -86.51 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -1.84 Total: -16.04 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -70.74 -0.05 -70.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819221391.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.179 kcal (2) G-P(sol) polarization free energy of solvation -70.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds