Wall clock time and date at job start Tue Mar 31 2020 06:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00043 * 2 1 4 4 H 1.48494 * 109.47251 * 270.00137 * 3 2 1 5 5 H 1.48500 * 109.47401 * 30.00653 * 3 2 1 6 6 H 1.48508 * 109.47017 * 150.00281 * 3 2 1 7 7 C 1.37874 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99977 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00364 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.47528 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00120 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47145 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.47094 * 305.00322 * 12 11 10 14 14 O 1.42897 * 109.46781 * 65.00277 * 12 11 10 15 15 C 1.53000 * 109.46879 * 185.00324 * 12 11 10 16 16 C 1.50702 * 109.46682 * 175.00415 * 15 12 11 17 17 C 1.39375 * 119.50667 * 90.00327 * 16 15 12 18 18 C 1.36093 * 120.98723 * 180.27575 * 17 16 15 19 19 C 1.40545 * 119.65049 * 359.45046 * 18 17 16 20 20 C 1.40535 * 121.28157 * 180.27282 * 19 18 17 21 21 C 1.36091 * 119.65868 * 180.33897 * 20 19 18 22 22 C 1.39375 * 120.98324 * 359.95153 * 21 20 19 23 23 C 1.36093 * 120.99140 * 0.02562 * 22 21 20 24 24 C 1.40540 * 119.65409 * 0.02562 * 23 22 21 25 25 C 1.36092 * 119.50189 * 270.01639 * 16 15 12 26 26 H 0.97002 * 119.99549 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46992 * 59.99669 * 9 7 2 28 28 H 1.09003 * 109.47008 * 299.99949 * 9 7 2 29 29 H 1.00901 * 110.99687 * 56.04933 * 10 9 7 30 30 H 1.09001 * 109.46828 * 60.00420 * 11 10 9 31 31 H 1.08999 * 109.47312 * 300.00317 * 11 10 9 32 32 H 0.96704 * 114.00161 * 59.99607 * 14 12 11 33 33 H 1.08995 * 109.46957 * 54.99975 * 15 12 11 34 34 H 1.09004 * 109.47135 * 294.99788 * 15 12 11 35 35 H 1.08002 * 119.50398 * 359.97438 * 17 16 15 36 36 H 1.07991 * 120.17325 * 179.69476 * 18 17 16 37 37 H 1.08001 * 120.17026 * 0.33589 * 20 19 18 38 38 H 1.07998 * 119.50679 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.50404 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.17461 * 179.97438 * 23 22 21 41 41 H 1.08004 * 120.17240 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 4.0012 -2.5792 -0.0010 11 6 5.4696 -2.6184 -0.0022 12 6 5.9409 -4.0741 -0.0014 13 1 5.4927 -4.6006 0.8412 14 8 5.5450 -4.7035 -1.2216 15 6 7.4652 -4.1165 0.1232 16 6 7.9194 -5.5481 0.2474 17 6 8.2229 -6.2742 -0.9028 18 6 8.6303 -7.5705 -0.8260 19 6 8.7589 -8.1855 0.4312 20 6 9.1823 -9.5202 0.5506 21 6 9.2887 -10.0851 1.7842 22 6 8.9848 -9.3591 2.9344 23 6 8.5722 -8.0645 2.8574 24 6 8.4493 -7.4475 1.6007 25 6 8.0267 -6.1125 1.4811 26 1 -0.4849 0.8401 0.0004 27 1 3.8752 -0.6805 0.8888 28 1 3.8746 -0.6802 -0.8912 29 1 3.6253 -3.0956 -0.7822 30 1 5.8472 -2.1142 0.8874 31 1 5.8459 -2.1148 -0.8926 32 1 5.9078 -4.2865 -2.0151 33 1 7.7731 -3.5595 1.0081 34 1 7.9148 -3.6683 -0.7629 35 1 8.1287 -5.8026 -1.8699 36 1 8.8573 -8.1223 -1.7261 37 1 9.4219 -10.0947 -0.3320 38 1 9.6139 -11.1111 1.8731 39 1 9.0780 -9.8310 3.9014 40 1 8.3397 -7.5144 3.7572 41 1 7.7883 -5.5375 2.3638 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819269691.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:27 Heat of formation + Delta-G solvation = -18.409849 kcal Electronic energy + Delta-G solvation = -20939.828787 eV Core-core repulsion = 17783.642046 eV Total energy + Delta-G solvation = -3156.186741 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.56515 -38.31449 -36.54909 -34.74166 -33.15663 -32.38660 -31.88284 -29.89640 -29.12885 -27.26405 -24.76678 -23.42992 -22.15967 -22.05103 -21.29847 -20.96934 -17.57189 -17.18470 -16.92163 -16.34070 -15.80719 -15.75201 -14.97368 -14.83741 -14.41215 -14.04020 -13.97147 -13.68861 -13.52953 -13.49000 -13.22923 -12.69988 -12.46692 -12.13124 -11.87134 -11.72883 -11.53162 -11.41636 -11.14299 -10.96267 -10.79482 -10.73156 -10.59832 -10.14740 -9.93173 -9.65824 -9.26633 -8.61977 -8.60786 -8.00198 -7.50270 -6.06112 -4.04174 0.39398 0.86822 1.91799 2.83274 3.26851 3.34455 3.36653 3.95464 4.34564 4.40899 4.45356 4.60202 4.68438 4.72519 4.84598 4.92945 5.04258 5.07603 5.20842 5.24955 5.26105 5.31630 5.44878 5.49107 5.60222 5.63321 5.73998 5.82806 5.93092 6.00672 6.07730 6.10538 6.26040 6.30564 6.42600 6.53299 6.68682 6.74495 6.87054 6.98990 7.59549 7.76075 7.88207 8.35452 8.64805 9.02785 9.55459 11.07269 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.034776 B = 0.002622 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.955434 B =10675.241273 C =10870.674366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.516 4.516 8 H 0.080 0.920 9 C 0.164 3.836 10 N -0.677 5.677 11 C 0.026 3.974 12 C 0.115 3.885 13 H 0.107 0.893 14 O -0.553 6.553 15 C -0.117 4.117 16 C -0.062 4.062 17 C -0.095 4.095 18 C -0.110 4.110 19 C -0.056 4.056 20 C -0.106 4.106 21 C -0.122 4.122 22 C -0.121 4.121 23 C -0.105 4.105 24 C -0.048 4.048 25 C -0.109 4.109 26 H 0.264 0.736 27 H 0.025 0.975 28 H -0.022 1.022 29 H 0.342 0.658 30 H 0.072 0.928 31 H 0.021 0.979 32 H 0.366 0.634 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.126 0.874 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.126 -16.441 0.961 28.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.554 4.554 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.308 5.308 11 C -0.105 4.105 12 C 0.056 3.944 13 H 0.125 0.875 14 O -0.357 6.357 15 C -0.155 4.155 16 C -0.062 4.062 17 C -0.113 4.113 18 C -0.128 4.128 19 C -0.056 4.056 20 C -0.124 4.124 21 C -0.140 4.140 22 C -0.139 4.139 23 C -0.123 4.123 24 C -0.048 4.048 25 C -0.127 4.127 26 H 0.074 0.926 27 H 0.043 0.957 28 H -0.004 1.004 29 H 0.160 0.840 30 H 0.090 0.910 31 H 0.039 0.961 32 H 0.213 0.787 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.144 0.856 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 22.581 -16.766 2.069 28.201 hybrid contribution 0.855 1.639 -1.228 2.219 sum 23.435 -15.127 0.841 27.906 Atomic orbital electron populations 1.69908 1.06149 1.26865 1.50953 1.24921 0.94775 0.98955 0.94772 0.86802 0.80285 0.83849 0.78398 1.20375 1.21117 1.19241 1.21071 0.88940 0.94869 1.50551 0.90244 1.20013 0.96735 0.85024 0.94595 1.60438 1.03693 1.16534 1.50130 1.22641 0.92039 0.95435 1.00347 1.22032 0.90842 0.93379 0.88175 0.87509 1.86654 1.75431 1.58326 1.15332 1.21425 0.97429 0.92912 1.03721 1.19468 0.97691 0.96041 0.93047 1.20728 0.98108 0.94344 0.98118 1.20981 1.00341 0.95251 0.96264 1.18096 1.00187 0.94143 0.93157 1.21020 0.99555 0.93963 0.97888 1.20820 1.00646 0.99959 0.92613 1.20830 0.99883 0.94673 0.98536 1.21058 0.99371 0.95367 0.96510 1.18075 0.99636 0.94081 0.93041 1.20917 1.00243 0.93933 0.97573 0.92639 0.95697 1.00446 0.83970 0.90968 0.96133 0.78747 0.89766 0.90626 0.86060 0.85721 0.85790 0.86204 0.86139 0.85598 0.85512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.52 -15.04 9.87 -34.44 -0.34 -15.38 16 8 H 0.08 2.52 8.06 -52.48 -0.42 2.10 16 9 C 0.16 4.03 4.51 -4.98 -0.02 4.01 16 10 N -0.68 -14.17 6.49 -115.06 -0.75 -14.92 16 11 C 0.03 0.41 5.36 -3.82 -0.02 0.39 16 12 C 0.12 1.52 3.19 -26.73 -0.09 1.44 16 13 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 14 O -0.55 -7.50 12.34 -35.23 -0.43 -7.93 16 15 C -0.12 -1.20 5.00 -27.88 -0.14 -1.34 16 16 C -0.06 -0.69 4.93 -104.97 -0.52 -1.21 16 17 C -0.09 -0.99 9.27 -39.93 -0.37 -1.36 16 18 C -0.11 -1.13 9.77 -39.48 -0.39 -1.52 16 19 C -0.06 -0.62 5.74 -106.83 -0.61 -1.23 16 20 C -0.11 -0.99 9.77 -39.49 -0.39 -1.37 16 21 C -0.12 -1.04 9.95 -39.93 -0.40 -1.44 16 22 C -0.12 -1.06 9.95 -39.93 -0.40 -1.46 16 23 C -0.11 -1.04 9.77 -39.48 -0.39 -1.42 16 24 C -0.05 -0.55 5.74 -106.83 -0.61 -1.17 16 25 C -0.11 -1.22 9.37 -39.49 -0.37 -1.59 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 28 H -0.02 -0.53 7.57 -51.93 -0.39 -0.93 16 29 H 0.34 7.18 8.28 -39.29 -0.33 6.85 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.37 3.67 9.05 45.56 0.41 4.08 16 33 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 34 H 0.08 0.67 8.08 -51.93 -0.42 0.26 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 344.11 15.07 5.19 5.19 Total: -1.00 -33.33 344.11 -10.37 -43.69 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -5.34 Total: 6.88 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -5.14 Total: -22.76 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.03 Total: -42.11 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.43 Total: -7.93 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.33 -10.37 -43.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819269691.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.285 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds