Wall clock time and date at job start Tue Mar 31 2020 06:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00043 * 2 1 4 4 H 1.48494 * 109.47251 * 270.00137 * 3 2 1 5 5 H 1.48500 * 109.47401 * 30.00653 * 3 2 1 6 6 H 1.48508 * 109.47017 * 150.00281 * 3 2 1 7 7 C 1.37874 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99977 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00364 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.47528 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00120 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47145 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.47094 * 305.00322 * 12 11 10 14 14 O 1.42897 * 109.46781 * 65.00277 * 12 11 10 15 15 C 1.53000 * 109.46879 * 185.00324 * 12 11 10 16 16 C 1.50702 * 109.46682 * 175.00415 * 15 12 11 17 17 C 1.39375 * 119.50667 * 90.00327 * 16 15 12 18 18 C 1.36093 * 120.98723 * 180.27575 * 17 16 15 19 19 C 1.40545 * 119.65049 * 359.45046 * 18 17 16 20 20 C 1.40535 * 121.28157 * 180.27282 * 19 18 17 21 21 C 1.36091 * 119.65868 * 180.33897 * 20 19 18 22 22 C 1.39375 * 120.98324 * 359.95153 * 21 20 19 23 23 C 1.36093 * 120.99140 * 0.02562 * 22 21 20 24 24 C 1.40540 * 119.65409 * 0.02562 * 23 22 21 25 25 C 1.36092 * 119.50189 * 270.01639 * 16 15 12 26 26 H 0.97002 * 119.99549 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46992 * 59.99669 * 9 7 2 28 28 H 1.09003 * 109.47008 * 299.99949 * 9 7 2 29 29 H 1.00901 * 110.99687 * 56.04933 * 10 9 7 30 30 H 1.09001 * 109.46828 * 60.00420 * 11 10 9 31 31 H 1.08999 * 109.47312 * 300.00317 * 11 10 9 32 32 H 0.96704 * 114.00161 * 59.99607 * 14 12 11 33 33 H 1.08995 * 109.46957 * 54.99975 * 15 12 11 34 34 H 1.09004 * 109.47135 * 294.99788 * 15 12 11 35 35 H 1.08002 * 119.50398 * 359.97438 * 17 16 15 36 36 H 1.07991 * 120.17325 * 179.69476 * 18 17 16 37 37 H 1.08001 * 120.17026 * 0.33589 * 20 19 18 38 38 H 1.07998 * 119.50679 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.50404 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.17461 * 179.97438 * 23 22 21 41 41 H 1.08004 * 120.17240 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 4.0012 -2.5792 -0.0010 11 6 5.4696 -2.6184 -0.0022 12 6 5.9409 -4.0741 -0.0014 13 1 5.4927 -4.6006 0.8412 14 8 5.5450 -4.7035 -1.2216 15 6 7.4652 -4.1165 0.1232 16 6 7.9194 -5.5481 0.2474 17 6 8.2229 -6.2742 -0.9028 18 6 8.6303 -7.5705 -0.8260 19 6 8.7589 -8.1855 0.4312 20 6 9.1823 -9.5202 0.5506 21 6 9.2887 -10.0851 1.7842 22 6 8.9848 -9.3591 2.9344 23 6 8.5722 -8.0645 2.8574 24 6 8.4493 -7.4475 1.6007 25 6 8.0267 -6.1125 1.4811 26 1 -0.4849 0.8401 0.0004 27 1 3.8752 -0.6805 0.8888 28 1 3.8746 -0.6802 -0.8912 29 1 3.6253 -3.0956 -0.7822 30 1 5.8472 -2.1142 0.8874 31 1 5.8459 -2.1148 -0.8926 32 1 5.9078 -4.2865 -2.0151 33 1 7.7731 -3.5595 1.0081 34 1 7.9148 -3.6683 -0.7629 35 1 8.1287 -5.8026 -1.8699 36 1 8.8573 -8.1223 -1.7261 37 1 9.4219 -10.0947 -0.3320 38 1 9.6139 -11.1111 1.8731 39 1 9.0780 -9.8310 3.9014 40 1 8.3397 -7.5144 3.7572 41 1 7.7883 -5.5375 2.3638 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819269691.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:26 Heat of formation + Delta-G solvation = -41.134248 kcal Electronic energy + Delta-G solvation = -20940.814191 eV Core-core repulsion = 17783.642046 eV Total energy + Delta-G solvation = -3157.172145 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.29365 -39.33447 -37.43786 -36.33073 -34.43929 -33.90012 -32.76871 -30.91312 -30.20708 -28.69473 -26.05569 -24.18424 -23.33932 -22.82074 -22.79016 -22.16018 -19.07732 -18.24574 -17.87397 -17.41419 -17.07510 -16.65153 -16.46466 -15.71213 -15.56557 -15.36149 -15.19047 -14.87330 -14.47074 -14.36280 -14.29139 -14.14561 -13.64783 -13.46846 -13.17342 -12.75836 -12.68354 -12.49233 -12.37013 -12.21441 -11.92366 -11.81714 -11.68300 -11.64331 -11.54292 -10.98250 -10.83325 -10.70916 -9.37974 -9.14758 -8.73726 -8.31368 -6.36743 -0.33128 0.12257 1.17209 1.33758 1.36668 1.47953 2.10918 2.33268 3.02246 3.16735 3.36500 3.62712 3.72468 3.81379 4.00925 4.08536 4.17213 4.20276 4.25801 4.34935 4.40918 4.44037 4.52975 4.62483 4.67026 4.72776 4.78987 4.91201 4.95379 5.05796 5.10128 5.18691 5.23616 5.37979 5.40672 5.51294 5.59870 5.69541 5.75129 5.93891 5.98695 6.16129 6.55000 6.64793 6.75110 6.91374 7.28375 8.85740 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.034776 B = 0.002622 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.955434 B =10675.241273 C =10870.674366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.004 3.996 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.248 1.248 7 C -0.532 4.532 8 H 0.032 0.968 9 C 0.175 3.825 10 N -0.692 5.692 11 C 0.026 3.974 12 C 0.128 3.872 13 H 0.083 0.917 14 O -0.569 6.569 15 C -0.104 4.104 16 C -0.074 4.074 17 C -0.108 4.108 18 C -0.117 4.117 19 C -0.078 4.078 20 C -0.117 4.117 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.072 4.072 25 C -0.124 4.124 26 H 0.268 0.732 27 H 0.026 0.974 28 H -0.012 1.012 29 H 0.339 0.661 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.383 0.617 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.137 0.863 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.783 -16.200 0.662 30.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.193 4.193 3 Si 0.780 3.220 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.172 1.172 7 C -0.571 4.571 8 H 0.051 0.949 9 C 0.047 3.953 10 N -0.323 5.323 11 C -0.103 4.103 12 C 0.068 3.932 13 H 0.101 0.899 14 O -0.376 6.376 15 C -0.142 4.142 16 C -0.074 4.074 17 C -0.125 4.125 18 C -0.135 4.135 19 C -0.078 4.078 20 C -0.134 4.134 21 C -0.144 4.144 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.072 4.072 25 C -0.142 4.142 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.005 0.995 29 H 0.156 0.844 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.231 0.769 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.155 0.845 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.155 0.845 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 25.267 -16.546 1.763 30.254 hybrid contribution -0.006 1.385 -1.119 1.780 sum 25.261 -15.161 0.644 29.468 Atomic orbital electron populations 1.70072 1.08307 1.28318 1.52208 1.25966 0.95722 1.03578 0.94019 0.85573 0.79315 0.77887 0.79248 1.18958 1.20612 1.17157 1.21371 0.91641 0.93347 1.50694 0.94948 1.19756 0.93548 0.87226 0.94789 1.60321 1.07199 1.14453 1.50327 1.22767 0.88609 0.97542 1.01420 1.21783 0.92690 0.91160 0.87520 0.89879 1.86621 1.76057 1.58756 1.16154 1.21300 0.94850 0.92942 1.05134 1.19598 0.98093 0.96415 0.93255 1.20975 0.98262 0.94654 0.98657 1.21291 0.99862 0.95471 0.96846 1.18437 1.00758 0.95162 0.93458 1.21332 0.99367 0.93544 0.99184 1.21200 0.99775 1.01160 0.92248 1.21194 0.98726 0.94328 0.99865 1.21301 1.00105 0.96221 0.96523 1.18375 1.00330 0.94506 0.94004 1.21121 1.00679 0.94289 0.98123 0.92301 0.95580 0.99483 0.84366 0.90349 0.94293 0.76866 0.88841 0.88638 0.84461 0.83696 0.83744 0.83616 0.83846 0.84527 0.84953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 2 C 0.00 0.26 5.47 84.65 0.46 0.73 16 3 Si 0.96 44.17 27.47 68.60 1.88 46.06 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.25 -10.58 6.54 99.48 0.65 -9.93 16 7 C -0.53 -31.71 9.87 25.60 0.25 -31.46 16 8 H 0.03 2.16 8.06 -2.91 -0.02 2.14 16 9 C 0.18 8.47 4.51 85.56 0.39 8.85 16 10 N -0.69 -28.76 6.49 -517.93 -3.36 -32.12 16 11 C 0.03 0.78 5.36 86.30 0.46 1.24 16 12 C 0.13 3.24 3.19 30.60 0.10 3.34 16 13 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 14 O -0.57 -14.79 12.34 -148.98 -1.84 -16.63 16 15 C -0.10 -1.96 5.00 29.85 0.15 -1.81 16 16 C -0.07 -1.56 4.93 -20.09 -0.10 -1.66 16 17 C -0.11 -2.12 9.27 22.04 0.20 -1.92 16 18 C -0.12 -2.27 9.77 22.33 0.22 -2.05 16 19 C -0.08 -1.68 5.74 -21.30 -0.12 -1.80 16 20 C -0.12 -2.00 9.77 22.33 0.22 -1.78 16 21 C -0.13 -1.92 9.95 22.04 0.22 -1.70 16 22 C -0.12 -1.98 9.95 22.04 0.22 -1.76 16 23 C -0.12 -2.38 9.77 22.33 0.22 -2.16 16 24 C -0.07 -1.64 5.74 -21.30 -0.12 -1.76 16 25 C -0.12 -2.77 9.37 22.33 0.21 -2.56 16 26 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 27 H 0.03 1.26 7.20 -2.39 -0.02 1.24 16 28 H -0.01 -0.58 7.57 -2.39 -0.02 -0.59 16 29 H 0.34 14.34 8.28 -89.69 -0.74 13.60 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.38 6.91 9.05 -74.05 -0.67 6.24 16 33 H 0.09 1.58 8.07 -2.39 -0.02 1.56 16 34 H 0.10 1.42 8.08 -2.38 -0.02 1.40 16 35 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 36 H 0.15 2.04 8.06 -2.92 -0.02 2.02 16 37 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 38 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 39 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 40 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 41 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -73.53 344.11 -0.48 -74.01 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: -0.44 Total: 26.94 kcal Atomic # 6 Polarization: -41.23 SS G_CDS: 2.97 Total: -38.26 kcal Atomic # 7 Polarization: -89.07 SS G_CDS: -3.06 Total: -92.13 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -1.84 Total: -16.63 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.06 kcal Total: -73.53 -0.48 -74.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819269691.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.881 kcal (2) G-P(sol) polarization free energy of solvation -73.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds