Wall clock time and date at job start Tue Mar 31 2020 06:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99933 * 2 1 4 4 H 1.48498 * 109.47370 * 270.00466 * 3 2 1 5 5 H 1.48507 * 109.47112 * 30.00418 * 3 2 1 6 6 H 1.48500 * 109.47099 * 150.00410 * 3 2 1 7 7 C 1.37877 * 120.00273 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99362 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00214 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.46949 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99828 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47278 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.46575 * 59.99879 * 12 11 10 14 14 O 1.42894 * 109.47208 * 300.00129 * 12 11 10 15 15 C 1.52994 * 109.47363 * 179.97438 * 12 11 10 16 16 C 1.50702 * 109.47128 * 185.00452 * 15 12 11 17 17 C 1.39370 * 119.50761 * 89.99978 * 16 15 12 18 18 C 1.36090 * 120.98756 * 179.97438 * 17 16 15 19 19 C 1.40545 * 119.65401 * 0.02562 * 18 17 16 20 20 C 1.40542 * 121.28246 * 180.02562 * 19 18 17 21 21 C 1.36087 * 119.65328 * 180.02562 * 20 19 18 22 22 C 1.39378 * 120.98557 * 359.96036 * 21 20 19 23 23 C 1.36085 * 120.99327 * 0.02562 * 22 21 20 24 24 C 1.40545 * 119.65444 * 359.97438 * 23 22 21 25 25 C 1.36091 * 119.50253 * 270.25593 * 16 15 12 26 26 H 0.96999 * 119.99996 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47155 * 59.99475 * 9 7 2 28 28 H 1.09003 * 109.46724 * 299.99282 * 9 7 2 29 29 H 1.00908 * 110.99777 * 303.94534 * 10 9 7 30 30 H 1.09003 * 109.47417 * 59.99893 * 11 10 9 31 31 H 1.08997 * 109.47277 * 299.99733 * 11 10 9 32 32 H 0.96707 * 114.00468 * 300.00022 * 14 12 11 33 33 H 1.08997 * 109.47346 * 64.99611 * 15 12 11 34 34 H 1.09002 * 109.46875 * 304.99898 * 15 12 11 35 35 H 1.07998 * 119.50720 * 359.94947 * 17 16 15 36 36 H 1.07997 * 120.17418 * 180.02562 * 18 17 16 37 37 H 1.07999 * 120.17163 * 0.03444 * 20 19 18 38 38 H 1.08000 * 119.51095 * 179.97438 * 21 20 19 39 39 H 1.08008 * 119.49983 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.17817 * 180.02562 * 23 22 21 41 41 H 1.08007 * 120.17646 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0012 -2.5790 -0.0022 11 6 5.4697 -2.6182 -0.0034 12 6 5.9411 -4.0738 -0.0039 13 1 5.5634 -4.5776 -0.8937 14 8 5.4479 -4.7346 1.1631 15 6 7.4705 -4.1146 -0.0058 16 6 7.9347 -5.5429 -0.1303 17 6 8.1475 -6.0878 -1.3953 18 6 8.5671 -7.3740 -1.5426 19 6 8.7897 -8.1676 -0.4042 20 6 9.2236 -9.4996 -0.5165 21 6 9.4283 -10.2382 0.6080 22 6 9.2147 -9.6934 1.8730 23 6 8.7949 -8.4074 2.0204 24 6 8.5728 -7.6136 0.8820 25 6 8.1349 -6.2830 0.9942 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6803 0.8888 28 1 3.8745 -0.6801 -0.8912 29 1 3.6260 -3.0958 0.7791 30 1 5.8474 -2.1147 0.8865 31 1 5.8459 -2.1138 -0.8935 32 1 5.7446 -4.3389 1.9942 33 1 7.8465 -3.6900 0.9250 34 1 7.8483 -3.5351 -0.8482 35 1 7.9764 -5.4804 -2.2717 36 1 8.7283 -7.7828 -2.5291 37 1 9.3939 -9.9346 -1.4902 38 1 9.7613 -11.2617 0.5189 39 1 9.3850 -10.3012 2.7495 40 1 8.6339 -7.9985 3.0070 41 1 7.9623 -5.8486 1.9679 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819269693.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:29 Heat of formation + Delta-G solvation = -18.211541 kcal Electronic energy + Delta-G solvation = -20960.642444 eV Core-core repulsion = 17804.464301 eV Total energy + Delta-G solvation = -3156.178142 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.56868 -38.31024 -36.56542 -34.72685 -33.07792 -32.41306 -31.93555 -29.80776 -29.21807 -27.27073 -24.72663 -23.45971 -22.17075 -22.03589 -21.27647 -20.98286 -17.56320 -17.15704 -16.92849 -16.37167 -15.94586 -15.61574 -14.96151 -14.84475 -14.43831 -14.07149 -13.89482 -13.68762 -13.55467 -13.50219 -13.23358 -12.69639 -12.47588 -12.08897 -11.85918 -11.74447 -11.50923 -11.41328 -11.14526 -10.97260 -10.80851 -10.70289 -10.57065 -10.12464 -10.01498 -9.66713 -9.27169 -8.62264 -8.59528 -8.00225 -7.47665 -6.05901 -4.03988 0.39829 0.85619 1.92392 2.82317 3.27528 3.34558 3.36244 3.95399 4.36616 4.40879 4.41616 4.62740 4.66340 4.75469 4.83728 4.89162 5.04119 5.10308 5.19543 5.25215 5.26380 5.33062 5.44870 5.48789 5.58857 5.63812 5.73072 5.82840 5.93001 6.00974 6.07738 6.10568 6.25613 6.30199 6.41970 6.53706 6.68446 6.74607 6.86844 6.99968 7.59220 7.76718 7.88798 8.36334 8.65106 9.03071 9.55654 11.07443 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.039177 B = 0.002596 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.536062 B =10783.433565 C =10948.556614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.516 4.516 8 H 0.080 0.920 9 C 0.164 3.836 10 N -0.677 5.677 11 C 0.026 3.974 12 C 0.116 3.884 13 H 0.106 0.894 14 O -0.552 6.552 15 C -0.117 4.117 16 C -0.066 4.066 17 C -0.107 4.107 18 C -0.110 4.110 19 C -0.056 4.056 20 C -0.106 4.106 21 C -0.122 4.122 22 C -0.121 4.121 23 C -0.104 4.104 24 C -0.049 4.049 25 C -0.094 4.094 26 H 0.264 0.736 27 H -0.018 1.018 28 H 0.020 0.980 29 H 0.343 0.657 30 H 0.020 0.980 31 H 0.072 0.928 32 H 0.366 0.634 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.255 -16.614 1.652 28.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.554 4.554 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.308 5.308 11 C -0.105 4.105 12 C 0.056 3.944 13 H 0.124 0.876 14 O -0.356 6.356 15 C -0.155 4.155 16 C -0.066 4.066 17 C -0.125 4.125 18 C -0.127 4.127 19 C -0.056 4.056 20 C -0.124 4.124 21 C -0.140 4.140 22 C -0.139 4.139 23 C -0.122 4.122 24 C -0.049 4.049 25 C -0.112 4.112 26 H 0.074 0.926 27 H 0.000 1.000 28 H 0.039 0.961 29 H 0.161 0.839 30 H 0.038 0.962 31 H 0.090 0.910 32 H 0.212 0.788 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 22.745 -16.929 0.516 28.358 hybrid contribution 0.832 1.628 1.212 2.194 sum 23.577 -15.301 1.729 28.160 Atomic orbital electron populations 1.69903 1.06149 1.26863 1.50960 1.24921 0.94769 0.98948 0.94774 0.86809 0.80179 0.83843 0.78556 1.20150 1.21190 1.19365 1.21071 0.88944 0.94866 1.50549 0.90240 1.20003 0.96724 0.85055 0.94582 1.60388 1.03690 1.16501 1.50245 1.22631 0.92043 0.95442 1.00356 1.21996 0.89905 0.92907 0.89579 0.87616 1.86659 1.75362 1.58070 1.15503 1.21420 0.97405 0.92983 1.03656 1.19454 0.98028 0.96080 0.93046 1.20810 0.99031 0.95615 0.97053 1.20981 1.00046 0.94137 0.97583 1.18100 1.00278 0.94279 0.92975 1.21022 0.99340 0.93171 0.98871 1.20818 1.00705 0.99927 0.92592 1.20828 1.00058 0.95629 0.97432 1.21045 0.99159 0.94262 0.97760 1.18095 0.99615 0.94320 0.92831 1.20830 0.99030 0.92751 0.98550 0.92640 0.99992 0.96149 0.83894 0.96200 0.90960 0.78769 0.90669 0.89784 0.85833 0.85650 0.85775 0.86206 0.86162 0.85663 0.85745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.52 -15.04 9.87 -34.44 -0.34 -15.38 16 8 H 0.08 2.53 8.06 -52.48 -0.42 2.10 16 9 C 0.16 4.03 4.51 -4.98 -0.02 4.01 16 10 N -0.68 -14.17 6.49 -115.06 -0.75 -14.92 16 11 C 0.03 0.41 5.39 -3.82 -0.02 0.39 16 12 C 0.12 1.53 3.23 -26.73 -0.09 1.44 16 13 H 0.11 1.57 8.14 -51.93 -0.42 1.14 16 14 O -0.55 -7.57 12.12 -35.23 -0.43 -8.00 16 15 C -0.12 -1.20 5.00 -27.88 -0.14 -1.34 16 16 C -0.07 -0.73 4.95 -104.97 -0.52 -1.25 16 17 C -0.11 -1.13 9.58 -39.93 -0.38 -1.52 16 18 C -0.11 -1.12 9.77 -39.48 -0.39 -1.51 16 19 C -0.06 -0.62 5.74 -106.83 -0.61 -1.24 16 20 C -0.11 -0.98 9.77 -39.49 -0.39 -1.37 16 21 C -0.12 -1.04 9.95 -39.93 -0.40 -1.43 16 22 C -0.12 -1.05 9.95 -39.93 -0.40 -1.45 16 23 C -0.10 -1.01 9.77 -39.49 -0.39 -1.40 16 24 C -0.05 -0.55 5.74 -106.84 -0.61 -1.16 16 25 C -0.09 -1.03 9.01 -39.49 -0.36 -1.39 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H -0.02 -0.43 7.20 -51.93 -0.37 -0.80 16 28 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 29 H 0.34 7.18 8.11 -39.29 -0.32 6.86 16 30 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.37 3.76 9.05 45.56 0.41 4.17 16 33 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 34 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 39 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 343.77 15.07 5.18 5.18 Total: -1.00 -33.38 343.77 -10.36 -43.75 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.33 Total: 6.86 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -5.14 Total: -22.70 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.03 Total: -42.11 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.43 Total: -8.00 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.38 -10.36 -43.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819269693.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.534 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds