Wall clock time and date at job start Tue Mar 31 2020 06:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99933 * 2 1 4 4 H 1.48498 * 109.47370 * 270.00466 * 3 2 1 5 5 H 1.48507 * 109.47112 * 30.00418 * 3 2 1 6 6 H 1.48500 * 109.47099 * 150.00410 * 3 2 1 7 7 C 1.37877 * 120.00273 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99362 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00214 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.46949 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99828 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47278 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.46575 * 59.99879 * 12 11 10 14 14 O 1.42894 * 109.47208 * 300.00129 * 12 11 10 15 15 C 1.52994 * 109.47363 * 179.97438 * 12 11 10 16 16 C 1.50702 * 109.47128 * 185.00452 * 15 12 11 17 17 C 1.39370 * 119.50761 * 89.99978 * 16 15 12 18 18 C 1.36090 * 120.98756 * 179.97438 * 17 16 15 19 19 C 1.40545 * 119.65401 * 0.02562 * 18 17 16 20 20 C 1.40542 * 121.28246 * 180.02562 * 19 18 17 21 21 C 1.36087 * 119.65328 * 180.02562 * 20 19 18 22 22 C 1.39378 * 120.98557 * 359.96036 * 21 20 19 23 23 C 1.36085 * 120.99327 * 0.02562 * 22 21 20 24 24 C 1.40545 * 119.65444 * 359.97438 * 23 22 21 25 25 C 1.36091 * 119.50253 * 270.25593 * 16 15 12 26 26 H 0.96999 * 119.99996 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47155 * 59.99475 * 9 7 2 28 28 H 1.09003 * 109.46724 * 299.99282 * 9 7 2 29 29 H 1.00908 * 110.99777 * 303.94534 * 10 9 7 30 30 H 1.09003 * 109.47417 * 59.99893 * 11 10 9 31 31 H 1.08997 * 109.47277 * 299.99733 * 11 10 9 32 32 H 0.96707 * 114.00468 * 300.00022 * 14 12 11 33 33 H 1.08997 * 109.47346 * 64.99611 * 15 12 11 34 34 H 1.09002 * 109.46875 * 304.99898 * 15 12 11 35 35 H 1.07998 * 119.50720 * 359.94947 * 17 16 15 36 36 H 1.07997 * 120.17418 * 180.02562 * 18 17 16 37 37 H 1.07999 * 120.17163 * 0.03444 * 20 19 18 38 38 H 1.08000 * 119.51095 * 179.97438 * 21 20 19 39 39 H 1.08008 * 119.49983 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.17817 * 180.02562 * 23 22 21 41 41 H 1.08007 * 120.17646 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0012 -2.5790 -0.0022 11 6 5.4697 -2.6182 -0.0034 12 6 5.9411 -4.0738 -0.0039 13 1 5.5634 -4.5776 -0.8937 14 8 5.4479 -4.7346 1.1631 15 6 7.4705 -4.1146 -0.0058 16 6 7.9347 -5.5429 -0.1303 17 6 8.1475 -6.0878 -1.3953 18 6 8.5671 -7.3740 -1.5426 19 6 8.7897 -8.1676 -0.4042 20 6 9.2236 -9.4996 -0.5165 21 6 9.4283 -10.2382 0.6080 22 6 9.2147 -9.6934 1.8730 23 6 8.7949 -8.4074 2.0204 24 6 8.5728 -7.6136 0.8820 25 6 8.1349 -6.2830 0.9942 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6803 0.8888 28 1 3.8745 -0.6801 -0.8912 29 1 3.6260 -3.0958 0.7791 30 1 5.8474 -2.1147 0.8865 31 1 5.8459 -2.1138 -0.8935 32 1 5.7446 -4.3389 1.9942 33 1 7.8465 -3.6900 0.9250 34 1 7.8483 -3.5351 -0.8482 35 1 7.9764 -5.4804 -2.2717 36 1 8.7283 -7.7828 -2.5291 37 1 9.3939 -9.9346 -1.4902 38 1 9.7613 -11.2617 0.5189 39 1 9.3850 -10.3012 2.7495 40 1 8.6339 -7.9985 3.0070 41 1 7.9623 -5.8486 1.9679 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819269693.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:29 Heat of formation + Delta-G solvation = -40.920608 kcal Electronic energy + Delta-G solvation = -20961.627183 eV Core-core repulsion = 17804.464301 eV Total energy + Delta-G solvation = -3157.162881 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.29194 -39.33322 -37.44497 -36.32300 -34.42953 -33.82658 -32.85057 -30.84208 -30.24961 -28.72147 -26.01920 -24.18726 -23.35118 -22.84013 -22.72837 -22.17598 -19.07298 -18.23662 -17.82203 -17.51418 -16.97622 -16.82538 -16.34534 -15.67420 -15.56341 -15.42651 -15.14559 -14.87790 -14.52482 -14.34562 -14.31329 -14.13645 -13.54830 -13.46551 -13.12091 -12.83813 -12.61188 -12.48668 -12.39919 -12.21955 -11.90614 -11.87286 -11.69549 -11.64730 -11.55080 -10.92712 -10.82251 -10.74029 -9.38423 -9.12360 -8.72877 -8.31137 -6.36539 -0.31803 0.11302 1.18635 1.34421 1.36628 1.47551 2.10303 2.33308 3.02509 3.17063 3.35781 3.65117 3.71298 3.83301 4.01192 4.09572 4.13778 4.21300 4.28298 4.34746 4.42010 4.44332 4.53028 4.60981 4.69157 4.73109 4.79212 4.89150 4.98029 5.06300 5.09402 5.20241 5.24347 5.37767 5.40563 5.51025 5.60178 5.69144 5.75987 5.94107 5.99041 6.16386 6.55469 6.65040 6.75429 6.90512 7.28589 8.85909 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.039177 B = 0.002596 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.536062 B =10783.433565 C =10948.556614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.005 3.995 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.248 1.248 7 C -0.532 4.532 8 H 0.032 0.968 9 C 0.175 3.825 10 N -0.691 5.691 11 C 0.026 3.974 12 C 0.128 3.872 13 H 0.085 0.915 14 O -0.569 6.569 15 C -0.104 4.104 16 C -0.079 4.079 17 C -0.123 4.123 18 C -0.116 4.116 19 C -0.079 4.079 20 C -0.118 4.118 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.121 4.121 24 C -0.073 4.073 25 C -0.104 4.104 26 H 0.268 0.732 27 H -0.012 1.012 28 H 0.025 0.975 29 H 0.339 0.661 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.381 0.619 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.135 0.865 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.139 0.861 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.886 -16.373 1.922 30.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.193 4.193 3 Si 0.780 3.220 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.172 1.172 7 C -0.570 4.570 8 H 0.051 0.949 9 C 0.047 3.953 10 N -0.323 5.323 11 C -0.103 4.103 12 C 0.068 3.932 13 H 0.103 0.897 14 O -0.376 6.376 15 C -0.142 4.142 16 C -0.079 4.079 17 C -0.141 4.141 18 C -0.134 4.134 19 C -0.079 4.079 20 C -0.135 4.135 21 C -0.143 4.143 22 C -0.142 4.142 23 C -0.139 4.139 24 C -0.073 4.073 25 C -0.122 4.122 26 H 0.077 0.923 27 H 0.006 0.994 28 H 0.043 0.957 29 H 0.157 0.843 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.230 0.770 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.153 0.847 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.157 0.843 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 25.404 -16.709 0.792 30.416 hybrid contribution -0.017 1.366 1.153 1.788 sum 25.387 -15.343 1.946 29.727 Atomic orbital electron populations 1.70068 1.08304 1.28316 1.52210 1.25965 0.95719 1.03571 0.94025 0.85576 0.79259 0.77897 0.79303 1.18966 1.20598 1.17183 1.21369 0.91644 0.93341 1.50689 0.94947 1.19751 0.93539 0.87257 0.94770 1.60276 1.07190 1.14401 1.50427 1.22756 0.88616 0.97561 1.01410 1.21781 0.91835 0.90736 0.88836 0.89655 1.86625 1.75955 1.58518 1.16455 1.21290 0.94755 0.93034 1.05089 1.19576 0.98588 0.96421 0.93310 1.21052 0.99416 0.96130 0.97483 1.21270 0.99603 0.94132 0.98410 1.18438 1.00876 0.95348 0.93224 1.21323 0.99250 0.92697 1.00264 1.21198 0.99788 1.01070 0.92288 1.21199 0.98937 0.95496 0.98551 1.21299 0.99679 0.94852 0.98023 1.18410 1.00303 0.94879 0.93673 1.21040 0.99099 0.92931 0.99128 0.92302 0.99394 0.95689 0.84293 0.94510 0.90229 0.77023 0.89039 0.88550 0.84672 0.83765 0.83863 0.83665 0.83810 0.84350 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.29 13.96 21.45 0.30 -59.99 16 2 C 0.00 0.27 5.47 84.65 0.46 0.73 16 3 Si 0.96 44.17 27.47 68.60 1.88 46.06 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.25 -10.56 6.54 99.48 0.65 -9.91 16 7 C -0.53 -31.70 9.87 25.60 0.25 -31.45 16 8 H 0.03 2.16 8.06 -2.91 -0.02 2.14 16 9 C 0.18 8.47 4.51 85.56 0.39 8.85 16 10 N -0.69 -28.72 6.49 -517.92 -3.36 -32.08 16 11 C 0.03 0.78 5.39 86.30 0.47 1.25 16 12 C 0.13 3.23 3.23 30.59 0.10 3.32 16 13 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 14 O -0.57 -15.16 12.12 -148.98 -1.81 -16.97 16 15 C -0.10 -1.94 5.00 29.85 0.15 -1.79 16 16 C -0.08 -1.67 4.95 -20.09 -0.10 -1.77 16 17 C -0.12 -2.52 9.58 22.04 0.21 -2.31 16 18 C -0.12 -2.31 9.77 22.33 0.22 -2.09 16 19 C -0.08 -1.69 5.74 -21.30 -0.12 -1.82 16 20 C -0.12 -2.02 9.77 22.33 0.22 -1.80 16 21 C -0.13 -1.89 9.95 22.04 0.22 -1.67 16 22 C -0.12 -1.93 9.95 22.04 0.22 -1.71 16 23 C -0.12 -2.23 9.77 22.33 0.22 -2.01 16 24 C -0.07 -1.61 5.74 -21.30 -0.12 -1.74 16 25 C -0.10 -2.23 9.01 22.33 0.20 -2.02 16 26 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 27 H -0.01 -0.54 7.20 -2.39 -0.02 -0.56 16 28 H 0.03 1.19 7.57 -2.39 -0.02 1.17 16 29 H 0.34 14.34 8.11 -89.69 -0.73 13.61 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.38 7.30 9.05 -74.05 -0.67 6.63 16 33 H 0.09 1.41 8.07 -2.39 -0.02 1.40 16 34 H 0.10 1.57 8.08 -2.39 -0.02 1.55 16 35 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 36 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 37 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 38 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 39 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 40 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -73.48 343.77 -0.43 -73.91 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: -0.42 Total: 27.09 kcal Atomic # 6 Polarization: -40.99 SS G_CDS: 2.98 Total: -38.01 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -3.06 Total: -92.07 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -1.81 Total: -16.97 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.06 kcal Total: -73.48 -0.43 -73.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819269693.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.986 kcal (2) G-P(sol) polarization free energy of solvation -73.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds