Wall clock time and date at job start Tue Mar 31 2020 05:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52990 * 109.47455 * 2 1 4 4 C 1.53003 * 109.46835 * 120.00420 * 2 1 3 5 5 H 1.08998 * 109.46867 * 184.99810 * 4 2 1 6 6 N 1.46502 * 109.46949 * 304.99096 * 4 2 1 7 7 C 1.34767 * 120.00515 * 275.00496 * 6 4 2 8 8 O 1.21515 * 119.99948 * 0.02562 * 7 6 4 9 9 O 1.34637 * 120.00145 * 179.72329 * 7 6 4 10 10 C 1.50697 * 109.47525 * 64.99662 * 4 2 1 11 11 O 1.20823 * 120.00306 * 239.99621 * 10 4 2 12 12 O 1.34227 * 119.99722 * 59.99995 * 10 4 2 13 13 C 1.45198 * 116.99849 * 179.97438 * 12 10 4 14 14 C 1.53004 * 109.47565 * 179.97438 * 13 12 10 15 15 C 1.50701 * 115.54692 * 65.10369 * 14 13 12 16 16 H 1.08001 * 119.99895 * 266.11544 * 15 14 13 17 17 C 1.37877 * 119.99614 * 86.12107 * 15 14 13 18 18 N 1.31511 * 120.00233 * 353.69883 * 17 15 14 19 19 Si 1.86800 * 119.99682 * 173.70362 * 17 15 14 20 20 H 1.48500 * 109.47151 * 59.99963 * 19 17 15 21 21 H 1.48498 * 109.47181 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47439 * 299.99677 * 19 17 15 23 23 C 1.53005 * 117.49477 * 279.43935 * 14 13 12 24 24 C 1.52998 * 117.50069 * 210.78207 * 14 13 12 25 25 H 1.09005 * 109.46898 * 299.99971 * 1 2 3 26 26 H 1.08998 * 109.47002 * 59.99614 * 1 2 3 27 27 H 1.09000 * 109.47489 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46964 * 239.99486 * 2 1 3 29 29 H 1.08998 * 109.47330 * 300.00185 * 3 2 1 30 30 H 1.09005 * 109.47044 * 60.00118 * 3 2 1 31 31 H 1.08997 * 109.47716 * 179.97438 * 3 2 1 32 32 H 0.97000 * 119.99431 * 95.00580 * 6 4 2 33 33 H 0.96706 * 117.00398 * 180.27316 * 9 7 6 34 34 H 1.09000 * 109.47522 * 299.99976 * 13 12 10 35 35 H 1.08999 * 109.47229 * 59.99838 * 13 12 10 36 36 H 0.97001 * 119.99998 * 180.02562 * 18 17 15 37 37 H 1.09002 * 117.50350 * 359.97438 * 23 14 13 38 38 H 1.09006 * 117.49407 * 145.02006 * 23 14 13 39 39 H 1.09003 * 117.49481 * 214.97753 * 24 14 13 40 40 H 1.08999 * 117.49808 * 359.97027 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 3.1263 -0.6445 1.2951 6 7 1.4559 -0.1037 2.4424 7 6 2.0349 0.9827 2.9909 8 8 3.0412 1.4502 2.4955 9 8 1.4949 1.5536 4.0841 10 6 1.6412 -2.1734 1.1889 11 8 0.9411 -2.6441 2.0538 12 8 2.0640 -2.9438 0.1743 13 6 1.6416 -4.3330 0.1811 14 6 2.2164 -5.0469 -1.0440 15 6 3.7182 -5.1662 -1.0815 16 1 4.3061 -4.4237 -1.6006 17 6 4.3417 -6.2233 -0.4532 18 7 3.6399 -7.0579 0.2820 19 14 6.1832 -6.4700 -0.6460 20 1 6.8992 -5.2746 -0.1325 21 1 6.6055 -7.6677 0.1236 22 1 6.5092 -6.6634 -2.0818 23 6 1.4891 -4.8591 -2.3770 24 6 1.4012 -6.1970 -1.6386 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6768 1.9563 -0.8899 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 0.6524 -0.4767 2.8376 33 1 1.9435 2.3333 4.4393 34 1 2.0031 -4.8183 1.0877 35 1 0.5531 -4.3819 0.1521 36 1 4.0785 -7.8014 0.7243 37 1 0.6009 -4.2272 -2.3811 38 1 2.0969 -4.8223 -3.2811 39 1 1.9512 -7.0399 -2.0572 40 1 0.4556 -6.4454 -1.1567 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824143339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:45 Heat of formation + Delta-G solvation = -153.626926 kcal Electronic energy + Delta-G solvation = -23510.532902 eV Core-core repulsion = 19905.340694 eV Total energy + Delta-G solvation = -3605.192208 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.94836 -39.81126 -37.44546 -36.63457 -35.64947 -35.40993 -33.19085 -31.99908 -28.53905 -27.18659 -26.50689 -25.22504 -22.47325 -21.49838 -21.10147 -19.76167 -19.35647 -19.18109 -17.47274 -16.85607 -16.81315 -16.38322 -15.78658 -15.63632 -14.74111 -14.65153 -14.46301 -13.96902 -13.63262 -13.51307 -13.09751 -12.65584 -12.30789 -12.20489 -11.96899 -11.78096 -11.62674 -11.37790 -11.13754 -10.99737 -10.90434 -10.83701 -10.69872 -10.58530 -10.35085 -10.14883 -9.98589 -9.65337 -9.35297 -8.88825 -8.50551 -8.27110 -6.10942 -4.16588 2.05308 2.47212 2.69328 3.22451 3.29227 3.33870 3.36637 4.36426 4.43892 4.62871 4.82110 4.92253 5.13562 5.19116 5.35630 5.44783 5.56097 5.66602 5.80269 5.87932 5.89505 5.95391 6.08664 6.15787 6.25131 6.28062 6.33104 6.43528 6.49740 6.57192 6.67532 6.97884 7.07522 7.23361 7.29665 7.40368 7.82767 8.13907 8.26476 8.34476 8.85442 9.49925 10.98320 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019310 B = 0.004591 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.711400 B = 6097.173920 C = 6592.783332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 C -0.136 4.136 4 C 0.175 3.825 5 H 0.130 0.870 6 N -0.690 5.690 7 C 0.669 3.331 8 O -0.572 6.572 9 O -0.527 6.527 10 C 0.456 3.544 11 O -0.517 6.517 12 O -0.327 6.327 13 C 0.116 3.884 14 C 0.036 3.964 15 C -0.492 4.492 16 H 0.064 0.936 17 C 0.070 3.930 18 N -0.882 5.882 19 Si 0.893 3.107 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.204 4.204 24 C -0.143 4.143 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.416 0.584 33 H 0.429 0.571 34 H 0.077 0.923 35 H 0.041 0.959 36 H 0.262 0.738 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.119 14.504 2.387 15.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.124 4.124 3 C -0.194 4.194 4 C 0.070 3.930 5 H 0.147 0.853 6 N -0.352 5.352 7 C 0.421 3.579 8 O -0.461 6.461 9 O -0.336 6.336 10 C 0.298 3.702 11 O -0.407 6.407 12 O -0.241 6.241 13 C 0.043 3.957 14 C 0.036 3.964 15 C -0.529 4.529 16 H 0.082 0.918 17 C -0.134 4.134 18 N -0.518 5.518 19 Si 0.720 3.280 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.241 4.241 24 C -0.181 4.181 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.120 0.880 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.253 0.747 33 H 0.288 0.712 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.024 14.036 2.385 15.459 hybrid contribution 0.784 -0.155 0.599 0.999 sum -5.240 13.881 2.984 15.134 Atomic orbital electron populations 1.21862 0.94577 1.02100 1.02157 1.21582 0.96703 0.97592 0.96522 1.21854 1.01986 0.94221 1.01300 1.20424 1.01139 0.86565 0.84878 0.85257 1.44200 1.31929 1.28989 1.30070 1.17504 0.81110 0.80595 0.78702 1.91083 1.25991 1.64806 1.64202 1.84184 1.58589 1.47883 1.42982 1.23202 0.77627 0.89078 0.80333 1.90627 1.36180 1.74906 1.39001 1.86513 1.68129 1.25150 1.44264 1.23013 0.95799 0.74640 1.02226 1.18772 0.94168 0.96203 0.87266 1.20350 0.88674 1.09319 1.34568 0.91811 1.25011 0.98203 0.95727 0.94441 1.69983 1.35914 1.15650 1.30261 0.86648 0.85343 0.77673 0.78340 1.20084 1.21280 1.20071 1.23019 1.01994 1.00786 0.98334 1.22539 0.99790 0.92127 1.03633 0.92551 0.91862 0.92610 0.87953 0.92827 0.92736 0.91561 0.74679 0.71175 0.90442 0.94084 0.92802 0.91520 0.89992 0.89359 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.80 37.16 0.33 -1.36 16 2 C -0.10 -1.29 2.71 -90.62 -0.25 -1.53 16 3 C -0.14 -1.58 7.79 37.15 0.29 -1.29 16 4 C 0.18 2.50 2.47 -69.08 -0.17 2.33 16 5 H 0.13 1.91 7.58 -51.93 -0.39 1.52 16 6 N -0.69 -8.79 3.93 -59.87 -0.24 -9.03 16 7 C 0.67 8.27 7.69 54.05 0.42 8.69 16 8 O -0.57 -8.36 14.26 -19.28 -0.28 -8.64 16 9 O -0.53 -4.81 13.48 -40.32 -0.54 -5.36 16 10 C 0.46 8.10 6.30 36.00 0.23 8.33 16 11 O -0.52 -10.07 15.59 -18.75 -0.29 -10.36 16 12 O -0.33 -6.68 9.96 -39.25 -0.39 -7.07 16 13 C 0.12 2.63 5.29 37.16 0.20 2.82 16 14 C 0.04 0.87 1.62 -155.66 -0.25 0.62 16 15 C -0.49 -13.04 8.78 -34.44 -0.30 -13.34 16 16 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 17 C 0.07 1.86 5.38 -17.82 -0.10 1.77 16 18 N -0.88 -24.42 12.88 55.43 0.71 -23.71 16 19 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 C -0.20 -4.25 9.96 -26.69 -0.27 -4.52 16 24 C -0.14 -3.22 9.37 -26.69 -0.25 -3.47 16 25 H 0.06 0.60 7.47 -51.93 -0.39 0.21 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.70 7.38 -51.93 -0.38 0.32 16 28 H 0.10 1.31 7.99 -51.93 -0.42 0.90 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.65 5.64 -51.93 -0.29 0.36 16 31 H 0.07 0.83 7.84 -51.93 -0.41 0.42 16 32 H 0.42 5.12 7.90 -40.82 -0.32 4.80 16 33 H 0.43 1.88 9.11 45.56 0.42 2.30 16 34 H 0.08 1.95 8.13 -51.93 -0.42 1.53 16 35 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 36 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 39 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 339.25 15.07 5.11 5.11 Total: -1.00 -30.49 339.25 -6.17 -36.66 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.11 Total: 7.56 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -0.13 Total: -0.96 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.48 Total: -32.74 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -1.50 Total: -31.42 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.49 -6.17 -36.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824143339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.969 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds