Wall clock time and date at job start Tue Mar 31 2020 05:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52990 * 109.47455 * 2 1 4 4 C 1.53003 * 109.46835 * 120.00420 * 2 1 3 5 5 H 1.08998 * 109.46867 * 184.99810 * 4 2 1 6 6 N 1.46502 * 109.46949 * 304.99096 * 4 2 1 7 7 C 1.34767 * 120.00515 * 275.00496 * 6 4 2 8 8 O 1.21515 * 119.99948 * 0.02562 * 7 6 4 9 9 O 1.34637 * 120.00145 * 179.72329 * 7 6 4 10 10 C 1.50697 * 109.47525 * 64.99662 * 4 2 1 11 11 O 1.20823 * 120.00306 * 239.99621 * 10 4 2 12 12 O 1.34227 * 119.99722 * 59.99995 * 10 4 2 13 13 C 1.45198 * 116.99849 * 179.97438 * 12 10 4 14 14 C 1.53004 * 109.47565 * 179.97438 * 13 12 10 15 15 C 1.50701 * 115.54692 * 65.10369 * 14 13 12 16 16 H 1.08001 * 119.99895 * 266.11544 * 15 14 13 17 17 C 1.37877 * 119.99614 * 86.12107 * 15 14 13 18 18 N 1.31511 * 120.00233 * 353.69883 * 17 15 14 19 19 Si 1.86800 * 119.99682 * 173.70362 * 17 15 14 20 20 H 1.48500 * 109.47151 * 59.99963 * 19 17 15 21 21 H 1.48498 * 109.47181 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47439 * 299.99677 * 19 17 15 23 23 C 1.53005 * 117.49477 * 279.43935 * 14 13 12 24 24 C 1.52998 * 117.50069 * 210.78207 * 14 13 12 25 25 H 1.09005 * 109.46898 * 299.99971 * 1 2 3 26 26 H 1.08998 * 109.47002 * 59.99614 * 1 2 3 27 27 H 1.09000 * 109.47489 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46964 * 239.99486 * 2 1 3 29 29 H 1.08998 * 109.47330 * 300.00185 * 3 2 1 30 30 H 1.09005 * 109.47044 * 60.00118 * 3 2 1 31 31 H 1.08997 * 109.47716 * 179.97438 * 3 2 1 32 32 H 0.97000 * 119.99431 * 95.00580 * 6 4 2 33 33 H 0.96706 * 117.00398 * 180.27316 * 9 7 6 34 34 H 1.09000 * 109.47522 * 299.99976 * 13 12 10 35 35 H 1.08999 * 109.47229 * 59.99838 * 13 12 10 36 36 H 0.97001 * 119.99998 * 180.02562 * 18 17 15 37 37 H 1.09002 * 117.50350 * 359.97438 * 23 14 13 38 38 H 1.09006 * 117.49407 * 145.02006 * 23 14 13 39 39 H 1.09003 * 117.49481 * 214.97753 * 24 14 13 40 40 H 1.08999 * 117.49808 * 359.97027 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 3.1263 -0.6445 1.2951 6 7 1.4559 -0.1037 2.4424 7 6 2.0349 0.9827 2.9909 8 8 3.0412 1.4502 2.4955 9 8 1.4949 1.5536 4.0841 10 6 1.6412 -2.1734 1.1889 11 8 0.9411 -2.6441 2.0538 12 8 2.0640 -2.9438 0.1743 13 6 1.6416 -4.3330 0.1811 14 6 2.2164 -5.0469 -1.0440 15 6 3.7182 -5.1662 -1.0815 16 1 4.3061 -4.4237 -1.6006 17 6 4.3417 -6.2233 -0.4532 18 7 3.6399 -7.0579 0.2820 19 14 6.1832 -6.4700 -0.6460 20 1 6.8992 -5.2746 -0.1325 21 1 6.6055 -7.6677 0.1236 22 1 6.5092 -6.6634 -2.0818 23 6 1.4891 -4.8591 -2.3770 24 6 1.4012 -6.1970 -1.6386 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6768 1.9563 -0.8899 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 0.6524 -0.4767 2.8376 33 1 1.9435 2.3333 4.4393 34 1 2.0031 -4.8183 1.0877 35 1 0.5531 -4.3819 0.1521 36 1 4.0785 -7.8014 0.7243 37 1 0.6009 -4.2272 -2.3811 38 1 2.0969 -4.8223 -3.2811 39 1 1.9512 -7.0399 -2.0572 40 1 0.4556 -6.4454 -1.1567 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824143339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:44 Heat of formation + Delta-G solvation = -173.484739 kcal Electronic energy + Delta-G solvation = -23511.394001 eV Core-core repulsion = 19905.340694 eV Total energy + Delta-G solvation = -3606.053308 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.14809 -41.07292 -38.84610 -37.96634 -37.05009 -36.61725 -34.19875 -34.01543 -29.87656 -28.15658 -28.09377 -27.14399 -23.49127 -23.00748 -22.59669 -21.19855 -20.82290 -20.31699 -18.63683 -18.36081 -18.05901 -17.75347 -17.32199 -16.97497 -16.57276 -15.98777 -15.62295 -15.43263 -14.92542 -14.63259 -14.40108 -14.07535 -13.83809 -13.60164 -13.28291 -13.09160 -12.90513 -12.80528 -12.69112 -12.42308 -12.34097 -12.15485 -12.07190 -11.83357 -11.75211 -11.67837 -11.61065 -11.37832 -10.78062 -10.49610 -10.41609 -10.07301 -8.14072 -6.24667 0.98486 1.03508 1.43327 1.43640 1.51020 1.69378 1.91939 2.42456 3.14899 3.27917 3.53192 3.58270 3.75889 3.84515 4.13638 4.13805 4.36878 4.41140 4.47132 4.59952 4.65854 4.76844 4.79282 4.89623 4.95684 4.99641 5.00510 5.17232 5.20633 5.33453 5.41512 5.43653 5.58119 5.63951 5.75392 5.78844 6.25169 6.35796 6.64512 6.80888 7.36888 7.44351 8.94436 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019310 B = 0.004591 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.711400 B = 6097.173920 C = 6592.783332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 C -0.128 4.128 4 C 0.185 3.815 5 H 0.124 0.876 6 N -0.689 5.689 7 C 0.674 3.326 8 O -0.595 6.595 9 O -0.516 6.516 10 C 0.456 3.544 11 O -0.535 6.535 12 O -0.335 6.335 13 C 0.129 3.871 14 C 0.002 3.998 15 C -0.504 4.504 16 H 0.056 0.944 17 C 0.025 3.975 18 N -0.909 5.909 19 Si 0.948 3.052 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.268 1.268 23 C -0.174 4.174 24 C -0.146 4.146 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.040 0.960 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.419 0.581 33 H 0.449 0.551 34 H 0.041 0.959 35 H 0.055 0.945 36 H 0.261 0.739 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.589 16.134 1.944 17.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 C -0.185 4.185 4 C 0.079 3.921 5 H 0.141 0.859 6 N -0.351 5.351 7 C 0.427 3.573 8 O -0.486 6.486 9 O -0.329 6.329 10 C 0.300 3.700 11 O -0.425 6.425 12 O -0.249 6.249 13 C 0.056 3.944 14 C 0.002 3.998 15 C -0.542 4.542 16 H 0.074 0.926 17 C -0.175 4.175 18 N -0.547 5.547 19 Si 0.774 3.226 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.193 1.193 23 C -0.211 4.211 24 C -0.184 4.184 25 H 0.081 0.919 26 H 0.100 0.900 27 H 0.059 0.941 28 H 0.116 0.884 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.257 0.743 33 H 0.313 0.687 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.500 15.703 1.958 17.107 hybrid contribution 0.899 -0.591 0.799 1.340 sum -5.601 15.112 2.757 16.351 Atomic orbital electron populations 1.21835 0.93493 1.01465 1.03452 1.21586 0.97550 0.97784 0.95070 1.21767 1.01154 0.93520 1.02045 1.20377 1.00857 0.84269 0.86637 0.85851 1.44122 1.31950 1.29221 1.29853 1.17461 0.80597 0.80266 0.79018 1.91078 1.27017 1.65447 1.65083 1.84167 1.58406 1.48811 1.41481 1.23870 0.76841 0.90064 0.79249 1.90614 1.37014 1.75506 1.39407 1.86507 1.68662 1.24280 1.45498 1.22596 0.96210 0.75601 0.99999 1.18873 0.93424 0.98105 0.89426 1.20620 0.90398 1.09044 1.34113 0.92577 1.25675 1.01888 0.95681 0.94305 1.70085 1.37274 1.16114 1.31189 0.85771 0.80940 0.77408 0.78522 1.19977 1.21162 1.19272 1.23026 1.02064 0.99435 0.96619 1.22473 0.99819 0.91979 1.04095 0.91857 0.90021 0.94129 0.88359 0.90922 0.93057 0.92761 0.74342 0.68740 0.94068 0.92668 0.93027 0.88751 0.89674 0.91340 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 8.80 71.98 0.63 -2.34 16 2 C -0.10 -2.32 2.71 -10.80 -0.03 -2.35 16 3 C -0.13 -2.70 7.79 71.98 0.56 -2.14 16 4 C 0.18 5.12 2.47 44.24 0.11 5.23 16 5 H 0.12 3.62 7.58 -2.39 -0.02 3.60 16 6 N -0.69 -16.75 3.93 -573.74 -2.25 -19.00 16 7 C 0.67 15.60 7.69 129.79 1.00 16.59 16 8 O -0.60 -16.64 14.26 19.79 0.28 -16.35 16 9 O -0.52 -8.27 13.48 -55.46 -0.75 -9.02 16 10 C 0.46 16.15 6.30 71.23 0.45 16.60 16 11 O -0.53 -20.81 15.59 21.97 0.34 -20.46 16 12 O -0.34 -13.70 9.96 -51.39 -0.51 -14.21 16 13 C 0.13 5.89 5.29 71.98 0.38 6.27 16 14 C 0.00 0.10 1.62 -52.93 -0.09 0.02 16 15 C -0.50 -26.93 8.78 25.60 0.22 -26.71 16 16 H 0.06 3.00 7.82 -2.91 -0.02 2.97 16 17 C 0.02 1.35 5.38 84.66 0.46 1.80 16 18 N -0.91 -51.25 12.88 21.45 0.28 -50.97 16 19 Si 0.95 42.94 29.54 68.60 2.03 44.96 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 21 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 C -0.17 -6.97 9.96 30.62 0.30 -6.67 16 24 C -0.15 -6.50 9.37 30.62 0.29 -6.21 16 25 H 0.06 1.20 7.47 -2.38 -0.02 1.18 16 26 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.04 0.95 7.38 -2.39 -0.02 0.94 16 28 H 0.10 2.38 7.99 -2.39 -0.02 2.36 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.12 5.64 -2.38 -0.01 1.11 16 31 H 0.05 1.28 7.84 -2.39 -0.02 1.27 16 32 H 0.42 9.81 7.90 -92.71 -0.73 9.08 16 33 H 0.45 2.82 9.11 -74.05 -0.67 2.14 16 34 H 0.04 2.14 8.13 -2.39 -0.02 2.12 16 35 H 0.06 2.30 8.08 -2.39 -0.02 2.28 16 36 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 37 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 38 H 0.08 3.34 8.14 -2.38 -0.02 3.32 16 39 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 40 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -64.95 339.25 3.36 -61.58 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -0.34 Total: 23.38 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 4.29 Total: 0.09 kcal Atomic # 7 Polarization: -67.99 SS G_CDS: -1.98 Total: -69.97 kcal Atomic # 8 Polarization: -59.41 SS G_CDS: -0.63 Total: -60.05 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -64.95 3.36 -61.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824143339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.900 kcal (2) G-P(sol) polarization free energy of solvation -64.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds