Wall clock time and date at job start Tue Mar 31 2020 05:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47297 * 2 1 4 4 C 1.53010 * 109.46999 * 119.99679 * 2 1 3 5 5 H 1.09006 * 109.46670 * 54.65674 * 4 2 1 6 6 N 1.46492 * 109.47348 * 294.65977 * 4 2 1 7 7 C 1.34776 * 120.00680 * 84.99531 * 6 4 2 8 8 O 1.21519 * 119.99673 * 0.02562 * 7 6 4 9 9 O 1.34633 * 120.00474 * 180.02562 * 7 6 4 10 10 C 1.50694 * 109.47153 * 174.65565 * 4 2 1 11 11 O 1.20828 * 120.00288 * 92.69681 * 10 4 2 12 12 O 1.34229 * 120.00121 * 272.70019 * 10 4 2 13 13 C 1.45203 * 117.00107 * 184.25762 * 12 10 4 14 14 C 1.53001 * 109.47280 * 176.28347 * 13 12 10 15 15 C 1.50701 * 115.54805 * 304.90605 * 14 13 12 16 16 H 1.08006 * 120.00096 * 145.51878 * 15 14 13 17 17 C 1.37876 * 120.00138 * 325.51947 * 15 14 13 18 18 N 1.31520 * 119.99861 * 348.63301 * 17 15 14 19 19 Si 1.86798 * 120.00371 * 168.63830 * 17 15 14 20 20 H 1.48502 * 109.47364 * 89.99723 * 19 17 15 21 21 H 1.48496 * 109.47021 * 209.99921 * 19 17 15 22 22 H 1.48504 * 109.46865 * 329.99573 * 19 17 15 23 23 C 1.52991 * 117.49924 * 159.23255 * 14 13 12 24 24 C 1.53001 * 117.50180 * 90.57167 * 14 13 12 25 25 H 1.08999 * 109.46857 * 60.00544 * 1 2 3 26 26 H 1.09009 * 109.46874 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47336 * 300.00152 * 1 2 3 28 28 H 1.08997 * 109.47336 * 239.99848 * 2 1 3 29 29 H 1.09001 * 109.47358 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47079 * 299.99916 * 3 2 1 31 31 H 1.09010 * 109.46665 * 59.99716 * 3 2 1 32 32 H 0.96998 * 120.00082 * 265.00434 * 6 4 2 33 33 H 0.96703 * 116.99776 * 180.02562 * 9 7 6 34 34 H 1.09000 * 109.46565 * 296.27927 * 13 12 10 35 35 H 1.08990 * 109.47333 * 56.28080 * 13 12 10 36 36 H 0.97001 * 119.99932 * 185.03762 * 18 17 15 37 37 H 1.08999 * 117.50336 * 359.97438 * 23 14 13 38 38 H 1.09007 * 117.50062 * 145.01966 * 23 14 13 39 39 H 1.08991 * 117.50230 * 214.98190 * 24 14 13 40 40 H 1.09003 * 117.49508 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6005 -1.7176 1.2985 6 7 1.6595 0.0396 2.4420 7 6 0.4428 -0.1370 2.9943 8 8 -0.3384 -0.9277 2.5033 9 8 0.0930 0.5627 4.0901 10 6 3.5411 -0.8369 1.1850 11 8 4.2348 0.0110 1.6948 12 8 4.1076 -1.8818 0.5613 13 6 5.5552 -1.9787 0.6200 14 6 6.0078 -3.2718 -0.0612 15 6 5.3832 -4.5376 0.4668 16 1 5.1716 -5.3564 -0.2051 17 6 5.0818 -4.6504 1.8074 18 7 5.5358 -3.7586 2.6608 19 14 4.0287 -6.0700 2.4118 20 1 4.9015 -7.2181 2.7660 21 1 3.2624 -5.6427 3.6099 22 1 3.0850 -6.4776 1.3401 23 6 7.4584 -3.3469 -0.5416 24 6 6.3216 -3.2098 -1.5574 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8901 32 1 2.2831 0.6706 2.8342 33 1 -0.7898 0.4016 4.4504 34 1 5.9976 -1.1243 0.1078 35 1 5.8771 -1.9848 1.6612 36 1 5.3859 -3.8771 3.6118 37 1 8.0903 -2.4750 -0.3728 38 1 7.9610 -4.3120 -0.4761 39 1 6.0767 -4.0845 -2.1598 40 1 6.2052 -2.2478 -2.0566 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824143340.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:48 Heat of formation + Delta-G solvation = -149.695745 kcal Electronic energy + Delta-G solvation = -23928.548230 eV Core-core repulsion = 20323.526491 eV Total energy + Delta-G solvation = -3605.021739 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.80132 -39.62051 -37.38364 -36.52351 -35.55376 -35.11318 -33.14336 -32.21206 -28.35906 -27.10002 -26.24686 -25.31002 -22.37092 -21.42327 -21.10386 -19.62995 -19.24634 -19.04825 -17.37068 -16.82754 -16.55936 -16.43218 -15.74083 -15.45615 -14.68962 -14.58580 -14.33126 -13.84578 -13.53022 -13.40843 -13.04933 -12.58252 -12.21771 -12.00203 -11.84347 -11.71907 -11.53910 -11.29691 -11.07260 -10.99489 -10.83139 -10.78222 -10.60216 -10.53276 -10.38927 -10.02825 -9.65336 -9.50458 -9.20554 -9.15795 -8.83438 -8.17219 -6.09977 -4.14024 2.12892 2.73520 2.84927 3.25075 3.34201 3.38430 3.41631 4.33289 4.56088 4.76464 4.86830 4.96786 5.10123 5.31546 5.50171 5.57336 5.62451 5.72751 5.89104 5.96174 5.96787 6.02902 6.14067 6.18673 6.33114 6.38392 6.41217 6.54707 6.59405 6.60436 6.73134 6.90694 7.20732 7.32560 7.35644 7.40339 7.85253 8.27378 8.35435 8.43865 8.80952 9.46258 10.90990 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.006100 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.397857 B = 4589.155580 C = 5512.912484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.103 4.103 3 C -0.150 4.150 4 C 0.175 3.825 5 H 0.125 0.875 6 N -0.689 5.689 7 C 0.668 3.332 8 O -0.571 6.571 9 O -0.527 6.527 10 C 0.460 3.540 11 O -0.518 6.518 12 O -0.318 6.318 13 C 0.114 3.886 14 C 0.046 3.954 15 C -0.482 4.482 16 H 0.063 0.937 17 C 0.074 3.926 18 N -0.885 5.885 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.270 1.270 23 C -0.192 4.192 24 C -0.208 4.208 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.416 0.584 33 H 0.428 0.572 34 H 0.029 0.971 35 H 0.118 0.882 36 H 0.263 0.737 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.460 9.360 -1.437 12.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.122 4.122 3 C -0.208 4.208 4 C 0.069 3.931 5 H 0.142 0.858 6 N -0.351 5.351 7 C 0.420 3.580 8 O -0.461 6.461 9 O -0.336 6.336 10 C 0.302 3.698 11 O -0.408 6.408 12 O -0.231 6.231 13 C 0.041 3.959 14 C 0.046 3.954 15 C -0.519 4.519 16 H 0.081 0.919 17 C -0.129 4.129 18 N -0.522 5.522 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.195 1.195 23 C -0.230 4.230 24 C -0.245 4.245 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.253 0.747 33 H 0.287 0.713 34 H 0.047 0.953 35 H 0.135 0.865 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.281 9.356 -1.466 12.580 hybrid contribution -0.502 -0.511 0.866 1.124 sum -8.783 8.845 -0.600 12.479 Atomic orbital electron populations 1.21848 0.93195 1.02932 1.01294 1.21526 0.97514 0.96953 0.96255 1.21870 1.01732 0.95246 1.01906 1.20398 0.89705 0.98189 0.84783 0.85758 1.44208 1.14754 1.46064 1.30077 1.17522 0.82775 0.78964 0.78719 1.91078 1.51535 1.38926 1.64518 1.84182 1.41674 1.65090 1.42702 1.23020 0.90698 0.80335 0.75780 1.90588 1.64568 1.41386 1.44273 1.86462 1.27278 1.43139 1.66265 1.22936 0.73169 0.94851 1.04898 1.18893 0.92953 0.93932 0.89650 1.20430 1.39512 0.98624 0.93293 0.91855 1.24936 0.95009 0.96225 0.96711 1.69760 1.45055 1.35027 1.02361 0.86548 0.80829 0.81967 0.78544 1.20629 1.21043 1.19454 1.22973 0.93058 1.00770 1.06206 1.22962 1.06462 1.00366 0.94748 0.92914 0.91552 0.92595 0.88773 0.92029 0.92261 0.92445 0.74686 0.71265 0.95326 0.86481 0.92674 0.91457 0.89729 0.90241 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 7.80 37.16 0.29 -1.42 16 2 C -0.10 -1.39 2.73 -90.62 -0.25 -1.64 16 3 C -0.15 -1.86 8.76 37.16 0.33 -1.54 16 4 C 0.17 2.83 2.45 -69.08 -0.17 2.66 16 5 H 0.12 2.17 7.58 -51.93 -0.39 1.78 16 6 N -0.69 -10.09 4.02 -59.87 -0.24 -10.33 16 7 C 0.67 9.45 7.71 54.05 0.42 9.86 16 8 O -0.57 -9.35 14.27 -19.29 -0.28 -9.63 16 9 O -0.53 -5.62 13.48 -40.31 -0.54 -6.17 16 10 C 0.46 9.06 6.41 36.00 0.23 9.29 16 11 O -0.52 -10.75 15.07 -18.75 -0.28 -11.03 16 12 O -0.32 -7.21 9.92 -39.26 -0.39 -7.60 16 13 C 0.11 2.71 4.54 37.16 0.17 2.88 16 14 C 0.05 1.12 2.12 -155.66 -0.33 0.79 16 15 C -0.48 -12.80 8.80 -34.44 -0.30 -13.10 16 16 H 0.06 1.68 7.84 -52.48 -0.41 1.27 16 17 C 0.07 1.97 5.20 -17.82 -0.09 1.88 16 18 N -0.88 -24.16 10.73 55.43 0.59 -23.56 16 19 Si 0.89 20.97 29.56 -169.99 -5.02 15.94 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 23 C -0.19 -4.18 9.96 -26.70 -0.27 -4.44 16 24 C -0.21 -4.37 9.93 -26.69 -0.27 -4.64 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.90 7.86 -51.92 -0.41 0.50 16 27 H 0.06 0.74 5.64 -51.93 -0.29 0.44 16 28 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.06 0.86 6.89 -51.93 -0.36 0.50 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.69 7.47 -51.92 -0.39 0.30 16 32 H 0.42 5.90 7.92 -40.82 -0.32 5.58 16 33 H 0.43 2.49 9.11 45.56 0.42 2.91 16 34 H 0.03 0.63 8.09 -51.93 -0.42 0.21 16 35 H 0.12 3.09 5.92 -51.93 -0.31 2.79 16 36 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 38 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 39 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 334.41 15.07 5.04 5.04 Total: -1.00 -30.17 334.41 -6.35 -36.51 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -4.98 Total: 10.25 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -0.24 Total: 0.59 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.35 Total: -33.90 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -1.49 Total: -34.43 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.17 -6.35 -36.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824143340.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.184 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds