Wall clock time and date at job start Tue Mar 31 2020 05:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47297 * 2 1 4 4 C 1.53010 * 109.46999 * 119.99679 * 2 1 3 5 5 H 1.09006 * 109.46670 * 54.65674 * 4 2 1 6 6 N 1.46492 * 109.47348 * 294.65977 * 4 2 1 7 7 C 1.34776 * 120.00680 * 84.99531 * 6 4 2 8 8 O 1.21519 * 119.99673 * 0.02562 * 7 6 4 9 9 O 1.34633 * 120.00474 * 180.02562 * 7 6 4 10 10 C 1.50694 * 109.47153 * 174.65565 * 4 2 1 11 11 O 1.20828 * 120.00288 * 92.69681 * 10 4 2 12 12 O 1.34229 * 120.00121 * 272.70019 * 10 4 2 13 13 C 1.45203 * 117.00107 * 184.25762 * 12 10 4 14 14 C 1.53001 * 109.47280 * 176.28347 * 13 12 10 15 15 C 1.50701 * 115.54805 * 304.90605 * 14 13 12 16 16 H 1.08006 * 120.00096 * 145.51878 * 15 14 13 17 17 C 1.37876 * 120.00138 * 325.51947 * 15 14 13 18 18 N 1.31520 * 119.99861 * 348.63301 * 17 15 14 19 19 Si 1.86798 * 120.00371 * 168.63830 * 17 15 14 20 20 H 1.48502 * 109.47364 * 89.99723 * 19 17 15 21 21 H 1.48496 * 109.47021 * 209.99921 * 19 17 15 22 22 H 1.48504 * 109.46865 * 329.99573 * 19 17 15 23 23 C 1.52991 * 117.49924 * 159.23255 * 14 13 12 24 24 C 1.53001 * 117.50180 * 90.57167 * 14 13 12 25 25 H 1.08999 * 109.46857 * 60.00544 * 1 2 3 26 26 H 1.09009 * 109.46874 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47336 * 300.00152 * 1 2 3 28 28 H 1.08997 * 109.47336 * 239.99848 * 2 1 3 29 29 H 1.09001 * 109.47358 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47079 * 299.99916 * 3 2 1 31 31 H 1.09010 * 109.46665 * 59.99716 * 3 2 1 32 32 H 0.96998 * 120.00082 * 265.00434 * 6 4 2 33 33 H 0.96703 * 116.99776 * 180.02562 * 9 7 6 34 34 H 1.09000 * 109.46565 * 296.27927 * 13 12 10 35 35 H 1.08990 * 109.47333 * 56.28080 * 13 12 10 36 36 H 0.97001 * 119.99932 * 185.03762 * 18 17 15 37 37 H 1.08999 * 117.50336 * 359.97438 * 23 14 13 38 38 H 1.09007 * 117.50062 * 145.01966 * 23 14 13 39 39 H 1.08991 * 117.50230 * 214.98190 * 24 14 13 40 40 H 1.09003 * 117.49508 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6005 -1.7176 1.2985 6 7 1.6595 0.0396 2.4420 7 6 0.4428 -0.1370 2.9943 8 8 -0.3384 -0.9277 2.5033 9 8 0.0930 0.5627 4.0901 10 6 3.5411 -0.8369 1.1850 11 8 4.2348 0.0110 1.6948 12 8 4.1076 -1.8818 0.5613 13 6 5.5552 -1.9787 0.6200 14 6 6.0078 -3.2718 -0.0612 15 6 5.3832 -4.5376 0.4668 16 1 5.1716 -5.3564 -0.2051 17 6 5.0818 -4.6504 1.8074 18 7 5.5358 -3.7586 2.6608 19 14 4.0287 -6.0700 2.4118 20 1 4.9015 -7.2181 2.7660 21 1 3.2624 -5.6427 3.6099 22 1 3.0850 -6.4776 1.3401 23 6 7.4584 -3.3469 -0.5416 24 6 6.3216 -3.2098 -1.5574 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8901 32 1 2.2831 0.6706 2.8342 33 1 -0.7898 0.4016 4.4504 34 1 5.9976 -1.1243 0.1078 35 1 5.8771 -1.9848 1.6612 36 1 5.3859 -3.8771 3.6118 37 1 8.0903 -2.4750 -0.3728 38 1 7.9610 -4.3120 -0.4761 39 1 6.0767 -4.0845 -2.1598 40 1 6.2052 -2.2478 -2.0566 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824143340.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:46 Heat of formation + Delta-G solvation = -169.229975 kcal Electronic energy + Delta-G solvation = -23929.395298 eV Core-core repulsion = 20323.526491 eV Total energy + Delta-G solvation = -3605.868807 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.09969 -41.02359 -38.87223 -37.92998 -36.91222 -36.56717 -34.26945 -34.20190 -29.77901 -28.10568 -27.97634 -27.21730 -23.49942 -23.03230 -22.58412 -21.12141 -20.80786 -20.29567 -18.73262 -18.39893 -17.96451 -17.77708 -17.34185 -16.96527 -16.50471 -15.98739 -15.52098 -15.41455 -14.93025 -14.66215 -14.42975 -13.99766 -13.69423 -13.60347 -13.26050 -13.05179 -12.87508 -12.77077 -12.70599 -12.37703 -12.36315 -12.18544 -12.11733 -11.85134 -11.77783 -11.64038 -11.37947 -11.23836 -11.08664 -10.68060 -10.42940 -10.06735 -8.09729 -6.18908 0.86372 1.31132 1.37637 1.42874 1.51091 1.67913 1.97660 2.39200 2.99215 3.40600 3.55733 3.65074 3.79314 3.82571 4.11048 4.21462 4.35698 4.39730 4.55602 4.58538 4.74989 4.77302 4.83745 4.93022 4.93892 4.98149 4.99011 5.13077 5.19326 5.31452 5.39704 5.41411 5.53472 5.70442 5.75852 5.82338 6.23024 6.32563 6.72145 6.83619 7.33995 7.42670 8.88812 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.006100 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.397857 B = 4589.155580 C = 5512.912484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 C -0.144 4.144 4 C 0.183 3.817 5 H 0.110 0.890 6 N -0.689 5.689 7 C 0.673 3.327 8 O -0.595 6.595 9 O -0.515 6.515 10 C 0.458 3.542 11 O -0.531 6.531 12 O -0.335 6.335 13 C 0.124 3.876 14 C 0.005 3.995 15 C -0.495 4.495 16 H 0.056 0.944 17 C 0.033 3.967 18 N -0.906 5.906 19 Si 0.943 3.057 20 H -0.273 1.273 21 H -0.289 1.289 22 H -0.267 1.267 23 C -0.185 4.185 24 C -0.184 4.184 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.096 0.904 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.418 0.582 33 H 0.449 0.551 34 H 0.040 0.960 35 H 0.086 0.914 36 H 0.259 0.741 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.387 10.110 -2.171 13.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.118 4.118 3 C -0.201 4.201 4 C 0.077 3.923 5 H 0.127 0.873 6 N -0.352 5.352 7 C 0.425 3.575 8 O -0.486 6.486 9 O -0.328 6.328 10 C 0.301 3.699 11 O -0.421 6.421 12 O -0.249 6.249 13 C 0.051 3.949 14 C 0.004 3.996 15 C -0.533 4.533 16 H 0.075 0.925 17 C -0.167 4.167 18 N -0.544 5.544 19 Si 0.769 3.231 20 H -0.199 1.199 21 H -0.215 1.215 22 H -0.191 1.191 23 C -0.223 4.223 24 C -0.221 4.221 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.256 0.744 33 H 0.312 0.688 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.224 10.115 -2.185 13.863 hybrid contribution -0.214 -0.702 1.116 1.336 sum -9.439 9.412 -1.069 13.372 Atomic orbital electron populations 1.21762 0.92084 1.02346 1.02185 1.21557 0.98213 0.97373 0.94679 1.21822 1.00450 0.94560 1.03278 1.20356 0.86827 0.98313 0.86841 0.87261 1.44146 1.15229 1.45884 1.29926 1.17485 0.82217 0.78682 0.79081 1.91070 1.52123 1.40000 1.65409 1.84165 1.43432 1.64056 1.41118 1.23677 0.92068 0.79336 0.74838 1.90569 1.65296 1.41644 1.44628 1.86458 1.26747 1.44503 1.67149 1.22631 0.74047 0.95163 1.03067 1.19041 0.94860 0.93364 0.92298 1.20674 1.39718 0.99435 0.93431 0.92531 1.25522 0.95950 0.98221 0.96974 1.69905 1.46126 1.36220 1.02166 0.85773 0.79570 0.79937 0.77828 1.19899 1.21475 1.19121 1.22970 0.92289 1.01310 1.05741 1.22982 1.04411 1.01707 0.93009 0.90536 0.92883 0.93088 0.88604 0.93871 0.89941 0.92041 0.74408 0.68769 0.94151 0.89584 0.93109 0.89918 0.90073 0.89721 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 7.80 71.98 0.56 -2.40 16 2 C -0.10 -2.54 2.73 -10.79 -0.03 -2.57 16 3 C -0.14 -3.31 8.76 71.98 0.63 -2.68 16 4 C 0.18 5.88 2.45 44.25 0.11 5.99 16 5 H 0.11 3.87 7.58 -2.38 -0.02 3.85 16 6 N -0.69 -19.75 4.02 -573.73 -2.31 -22.05 16 7 C 0.67 18.22 7.71 129.79 1.00 19.22 16 8 O -0.59 -18.94 14.27 19.78 0.28 -18.65 16 9 O -0.52 -9.99 13.48 -55.42 -0.75 -10.74 16 10 C 0.46 18.16 6.41 71.23 0.46 18.62 16 11 O -0.53 -22.19 15.07 21.96 0.33 -21.86 16 12 O -0.33 -15.31 9.92 -51.41 -0.51 -15.82 16 13 C 0.12 5.93 4.54 71.98 0.33 6.26 16 14 C 0.00 0.23 2.12 -52.93 -0.11 0.12 16 15 C -0.50 -26.43 8.80 25.60 0.23 -26.21 16 16 H 0.06 3.00 7.84 -2.91 -0.02 2.98 16 17 C 0.03 1.79 5.20 84.65 0.44 2.23 16 18 N -0.91 -50.37 10.73 21.45 0.23 -50.14 16 19 Si 0.94 43.26 29.56 68.60 2.03 45.29 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 C -0.19 -7.83 9.96 30.61 0.30 -7.53 16 24 C -0.18 -7.39 9.93 30.62 0.30 -7.09 16 25 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.05 1.39 7.86 -2.38 -0.02 1.37 16 27 H 0.05 1.25 5.64 -2.39 -0.01 1.23 16 28 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.04 1.15 6.89 -2.39 -0.02 1.14 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.35 7.47 -2.38 -0.02 1.34 16 32 H 0.42 11.61 7.92 -92.71 -0.73 10.88 16 33 H 0.45 4.19 9.11 -74.06 -0.67 3.52 16 34 H 0.04 1.78 8.09 -2.39 -0.02 1.76 16 35 H 0.09 4.66 5.92 -2.39 -0.01 4.64 16 36 H 0.26 14.02 8.32 -92.71 -0.77 13.25 16 37 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 38 H 0.08 3.44 8.14 -2.38 -0.02 3.43 16 39 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 40 H 0.09 3.24 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -64.16 334.41 3.19 -60.97 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: -0.34 Total: 29.05 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 4.22 Total: 3.96 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -2.08 Total: -72.19 kcal Atomic # 8 Polarization: -66.43 SS G_CDS: -0.64 Total: -67.08 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -64.16 3.19 -60.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824143340.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.260 kcal (2) G-P(sol) polarization free energy of solvation -64.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds