Wall clock time and date at job start Tue Mar 31 2020 05:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47397 * 2 1 4 4 C 1.52997 * 109.47511 * 240.00167 * 2 1 3 5 5 C 1.50707 * 109.47136 * 64.99888 * 4 2 1 6 6 O 1.20819 * 119.99815 * 0.02562 * 5 4 2 7 7 O 1.34224 * 120.00096 * 180.02562 * 5 4 2 8 8 C 1.50696 * 109.47036 * 120.00186 * 2 1 3 9 9 O 1.20827 * 120.00071 * 120.00102 * 8 2 1 10 10 O 1.34236 * 119.99952 * 300.00259 * 8 2 1 11 11 C 1.45201 * 116.99891 * 180.02562 * 10 8 2 12 12 C 1.53071 * 109.45280 * 89.78629 * 11 10 8 13 13 C 1.53201 * 109.29371 * 181.24320 * 12 11 10 14 14 N 1.46928 * 108.89275 * 305.57634 * 13 12 11 15 15 C 1.36934 * 120.63265 * 233.51651 * 14 13 12 16 16 H 1.07997 * 119.99862 * 151.82898 * 15 14 13 17 17 C 1.38806 * 120.00015 * 331.83027 * 15 14 13 18 18 N 1.31624 * 120.00191 * 343.08772 * 17 15 14 19 19 Si 1.86800 * 120.00146 * 163.08448 * 17 15 14 20 20 H 1.48503 * 109.47142 * 60.00161 * 19 17 15 21 21 H 1.48498 * 109.47084 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47267 * 300.00095 * 19 17 15 23 23 C 1.46932 * 118.73342 * 53.53882 * 14 13 12 24 24 C 1.53045 * 109.45767 * 209.99854 * 11 10 8 25 25 H 1.09009 * 109.46872 * 60.00022 * 1 2 3 26 26 H 1.09000 * 109.47350 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47408 * 300.00181 * 1 2 3 28 28 H 1.08997 * 109.47738 * 185.00232 * 4 2 1 29 29 H 1.09006 * 109.46927 * 305.00277 * 4 2 1 30 30 H 0.96701 * 117.00050 * 180.02562 * 7 5 4 31 31 H 1.09001 * 109.45728 * 329.96931 * 11 10 8 32 32 H 1.09002 * 109.39343 * 61.36562 * 12 11 10 33 33 H 1.09003 * 109.62467 * 301.25789 * 12 11 10 34 34 H 1.09000 * 109.58250 * 185.72113 * 13 12 11 35 35 H 1.08995 * 109.58477 * 65.43833 * 13 12 11 36 36 H 0.96995 * 120.00379 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.59017 * 66.18099 * 23 14 13 38 38 H 1.09009 * 109.58200 * 186.46074 * 23 14 13 39 39 H 1.09002 * 109.49555 * 58.66178 * 24 11 10 40 40 H 1.08999 * 109.49562 * 298.56681 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0572 -2.4766 6 8 1.0141 1.0836 -2.3637 7 8 1.9831 -0.3899 -3.6952 8 6 2.0322 -0.7104 1.2304 9 8 2.7269 -1.6928 1.1195 10 8 1.7079 -0.2519 2.4496 11 6 2.2275 -0.9858 3.5896 12 6 3.5905 -0.4131 3.9864 13 6 4.1494 -1.2098 5.1695 14 7 3.1556 -1.2146 6.2518 15 6 3.4971 -0.8091 7.5143 16 1 2.7484 -0.3826 8.1655 17 6 4.8054 -0.9462 7.9573 18 7 5.6342 -1.7486 7.3234 19 14 5.3900 0.0081 9.4529 20 1 4.5706 -0.3695 10.6324 21 1 6.8159 -0.3112 9.7175 22 1 5.2485 1.4641 9.1975 23 6 1.7886 -1.6632 5.9535 24 6 1.2543 -0.8593 4.7640 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.1263 -0.7995 -1.2056 29 1 1.6053 -1.7198 -1.2952 30 1 1.7054 0.1436 -4.4524 31 1 2.3411 -2.0367 3.3237 32 1 3.4742 0.6319 4.2739 33 1 4.2772 -0.4846 3.1429 34 1 5.0702 -0.7444 5.5210 35 1 4.3538 -2.2337 4.8566 36 1 6.5483 -1.8447 7.6331 37 1 1.7986 -2.7239 5.7029 38 1 1.1524 -1.4993 6.8234 39 1 0.2786 -1.2475 4.4713 40 1 1.1594 0.1891 5.0465 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827333300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:35 Heat of formation + Delta-G solvation = -170.067287 kcal Electronic energy + Delta-G solvation = -22932.347632 eV Core-core repulsion = 19326.442516 eV Total energy + Delta-G solvation = -3605.905116 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.96246 -40.23368 -37.67862 -36.65123 -35.88755 -34.63015 -32.69314 -30.32482 -29.74595 -28.74264 -25.62564 -24.56938 -22.59825 -22.25682 -21.47598 -19.91545 -19.28301 -18.59841 -17.72560 -17.00944 -16.68645 -16.43823 -15.86143 -15.51026 -14.84338 -14.35585 -14.02750 -13.73461 -13.56430 -13.41391 -13.09472 -12.81481 -12.72882 -12.54926 -12.43517 -11.74838 -11.63528 -11.55508 -11.45273 -11.26511 -11.16450 -10.84037 -10.74100 -10.71233 -10.34888 -10.25824 -10.21614 -9.92321 -9.69145 -9.42939 -8.49853 -6.74523 -5.82657 -3.26073 1.83720 2.29885 2.39582 3.11515 3.37504 3.43283 3.44493 4.13405 4.46811 4.54261 4.73512 4.92949 5.08694 5.22294 5.23359 5.30182 5.36163 5.41007 5.51488 5.61045 5.69797 5.71298 5.95051 6.00187 6.17287 6.18869 6.27337 6.43914 6.49403 6.57101 6.67535 6.84201 6.92401 7.28989 7.52190 7.59307 7.76186 7.90354 8.40610 9.16268 9.79127 10.35553 11.26328 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.038490 B = 0.003145 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.293066 B = 8900.098107 C = 9148.011489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.074 4.074 3 H 0.117 0.883 4 C -0.103 4.103 5 C 0.484 3.516 6 O -0.512 6.512 7 O -0.515 6.515 8 C 0.465 3.535 9 O -0.509 6.509 10 O -0.353 6.353 11 C 0.097 3.903 12 C -0.154 4.154 13 C 0.175 3.825 14 N -0.592 5.592 15 C -0.257 4.257 16 H 0.067 0.933 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.905 3.095 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.148 3.852 24 C -0.127 4.127 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.411 0.589 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.093 0.907 35 H 0.022 0.978 36 H 0.256 0.744 37 H 0.021 0.979 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.998 2.883 -18.461 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.093 4.093 3 H 0.135 0.865 4 C -0.140 4.140 5 C 0.327 3.673 6 O -0.400 6.400 7 O -0.327 6.327 8 C 0.307 3.693 9 O -0.398 6.398 10 O -0.269 6.269 11 C 0.044 3.956 12 C -0.193 4.193 13 C 0.049 3.951 14 N -0.315 5.315 15 C -0.386 4.386 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.546 5.546 19 Si 0.734 3.266 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.021 3.979 24 C -0.167 4.167 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.270 0.730 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.040 0.960 36 H 0.066 0.934 37 H 0.039 0.961 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.650 2.574 -18.000 20.136 hybrid contribution 0.354 0.711 0.207 0.820 sum -8.296 3.285 -17.793 19.905 Atomic orbital electron populations 1.21927 0.91346 1.02887 1.04757 1.20734 0.99104 1.01070 0.88388 0.86468 1.21194 1.05248 1.00083 0.87504 1.23308 0.75557 0.83702 0.84747 1.90717 1.37534 1.24730 1.87064 1.84540 1.74771 1.56378 1.17033 1.23268 0.77593 0.82790 0.85645 1.90673 1.35662 1.26004 1.87424 1.86523 1.69365 1.56175 1.14851 1.22973 0.95094 0.95810 0.81748 1.22678 0.94335 1.01783 1.00532 1.20759 0.93621 0.96289 0.84458 1.44114 1.05482 1.75204 1.06699 1.19147 0.94715 1.33961 0.90806 0.91518 1.25078 0.98127 0.98097 0.98242 1.70015 1.06059 1.36443 1.42122 0.86337 0.77628 0.80033 0.82565 1.20809 1.21605 1.20956 1.20890 0.88114 0.94651 0.94229 1.22227 0.96925 1.02782 0.94754 0.89780 0.92293 0.90615 0.86335 0.86545 0.72987 0.90307 0.91691 0.92761 0.88861 0.95960 0.93446 0.96112 0.91777 0.92249 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.87 37.15 0.33 -1.13 16 2 C -0.07 -0.78 2.48 -91.78 -0.23 -1.01 16 3 H 0.12 1.20 7.96 -51.93 -0.41 0.79 16 4 C -0.10 -0.92 4.63 -27.88 -0.13 -1.05 16 5 C 0.48 4.18 8.05 36.01 0.29 4.47 16 6 O -0.51 -5.63 14.73 -18.75 -0.28 -5.90 16 7 O -0.52 -3.36 13.42 -39.24 -0.53 -3.88 16 8 C 0.46 6.74 7.23 36.00 0.26 7.00 16 9 O -0.51 -8.63 15.14 -18.75 -0.28 -8.92 16 10 O -0.35 -5.69 9.78 -39.27 -0.38 -6.08 16 11 C 0.10 1.78 2.41 -26.67 -0.06 1.71 16 12 C -0.15 -3.10 5.73 -26.59 -0.15 -3.26 16 13 C 0.17 4.23 5.30 -3.71 -0.02 4.21 16 14 N -0.59 -14.83 3.00 -172.31 -0.52 -15.35 16 15 C -0.26 -7.00 9.58 -15.06 -0.14 -7.14 16 16 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 17 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 18 N -0.90 -26.14 11.20 55.49 0.62 -25.52 16 19 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.15 3.06 6.52 -3.71 -0.02 3.04 16 24 C -0.13 -2.25 5.75 -26.61 -0.15 -2.40 16 25 H 0.08 0.80 5.96 -51.92 -0.31 0.49 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.75 8.11 -51.93 -0.42 0.32 16 28 H 0.12 1.04 7.96 -51.93 -0.41 0.62 16 29 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.41 0.93 9.10 45.56 0.41 1.34 16 31 H 0.08 1.52 7.16 -51.93 -0.37 1.15 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.09 2.50 6.06 -51.93 -0.31 2.19 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 1.27 7.93 -51.92 -0.41 0.86 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 331.18 15.07 4.99 4.99 Total: -1.00 -32.45 331.18 -6.70 -39.15 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.17 Total: 0.53 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -0.12 Total: 4.46 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.11 Total: -40.86 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -1.47 Total: -24.78 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.45 -6.70 -39.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827333300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.918 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds