Wall clock time and date at job start Tue Mar 31 2020 05:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46653 * 2 1 4 4 C 1.53000 * 109.47038 * 120.00184 * 2 1 3 5 5 C 1.50699 * 109.46699 * 295.00211 * 4 2 1 6 6 O 1.20825 * 120.00678 * 359.97438 * 5 4 2 7 7 O 1.34238 * 119.99632 * 180.02562 * 5 4 2 8 8 C 1.50703 * 109.46920 * 240.00212 * 2 1 3 9 9 O 1.20825 * 119.99483 * 239.99763 * 8 2 1 10 10 O 1.34221 * 120.00192 * 60.00222 * 8 2 1 11 11 C 1.45209 * 117.00226 * 179.97438 * 10 8 2 12 12 C 1.53036 * 109.46001 * 210.00042 * 11 10 8 13 13 C 1.53191 * 109.31166 * 178.61238 * 12 11 10 14 14 N 1.46926 * 108.89452 * 54.56289 * 13 12 11 15 15 C 1.36934 * 120.63630 * 126.46229 * 14 13 12 16 16 H 1.08000 * 119.99464 * 331.92669 * 15 14 13 17 17 C 1.38810 * 120.00385 * 151.92945 * 15 14 13 18 18 N 1.31619 * 119.99689 * 343.17004 * 17 15 14 19 19 Si 1.86795 * 119.99988 * 163.17171 * 17 15 14 20 20 H 1.48503 * 109.47611 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47271 * 120.00121 * 19 17 15 22 22 H 1.48496 * 109.47355 * 239.99904 * 19 17 15 23 23 C 1.46973 * 118.71425 * 306.64410 * 14 13 12 24 24 C 1.53043 * 109.45872 * 89.92673 * 11 10 8 25 25 H 1.09006 * 109.47161 * 59.99921 * 1 2 3 26 26 H 1.09001 * 109.47353 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47529 * 299.99790 * 1 2 3 28 28 H 1.08998 * 109.47123 * 55.00032 * 4 2 1 29 29 H 1.08991 * 109.46781 * 175.00019 * 4 2 1 30 30 H 0.96698 * 116.99737 * 179.97438 * 7 5 4 31 31 H 1.09004 * 109.44332 * 329.96695 * 11 10 8 32 32 H 1.09001 * 109.50071 * 58.66026 * 12 11 10 33 33 H 1.09005 * 109.49477 * 298.56362 * 12 11 10 34 34 H 1.09000 * 109.58954 * 174.41929 * 13 12 11 35 35 H 1.08996 * 109.58649 * 294.70243 * 13 12 11 36 36 H 0.97000 * 119.99637 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.46458 * 293.56938 * 23 14 13 38 38 H 1.08992 * 109.71060 * 173.28601 * 23 14 13 39 39 H 1.08995 * 109.49931 * 301.34367 * 24 11 10 40 40 H 1.09003 * 109.49592 * 61.43807 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6412 0.0570 2.4765 6 8 1.0139 1.0835 2.3637 7 8 1.9838 -0.3897 3.6952 8 6 2.0323 -0.7104 -1.2305 9 8 2.7269 -1.6927 -1.1196 10 8 1.7080 -0.2518 -2.4496 11 6 2.2277 -0.9857 -3.5897 12 6 2.4324 -0.0255 -4.7637 13 6 3.0130 -0.7965 -5.9534 14 7 2.1382 -1.9382 -6.2532 15 6 1.6444 -2.1260 -7.5165 16 1 1.4922 -1.2784 -8.1683 17 6 1.3394 -3.4057 -7.9594 18 7 1.8183 -4.4538 -7.3233 19 14 0.2496 -3.6404 -9.4583 20 1 -0.1562 -2.3137 -9.9879 21 1 0.9986 -4.3832 -10.5035 22 1 -0.9605 -4.4109 -9.0747 23 6 1.8001 -2.8723 -5.1700 24 6 1.2330 -2.0780 -3.9892 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6053 -1.7198 1.2951 29 1 3.1262 -0.7995 1.2055 30 1 1.7059 0.1438 4.4523 31 1 3.1809 -1.4423 -3.3235 32 1 3.1228 0.7654 -4.4708 33 1 1.4752 0.4127 -5.0464 34 1 3.0683 -0.1405 -6.8221 35 1 4.0110 -1.1566 -5.7034 36 1 1.6055 -5.3480 -7.6330 37 1 2.6981 -3.4039 -4.8553 38 1 1.0560 -3.5875 -5.5203 39 1 1.0698 -2.7479 -3.1450 40 1 0.2872 -1.6204 -4.2792 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827333301.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:38 Heat of formation + Delta-G solvation = -170.209630 kcal Electronic energy + Delta-G solvation = -22955.015768 eV Core-core repulsion = 19349.104480 eV Total energy + Delta-G solvation = -3605.911288 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.96260 -40.23540 -37.67949 -36.65156 -35.88890 -34.62377 -32.69707 -30.32609 -29.75196 -28.73297 -25.61988 -24.56020 -22.61426 -22.25202 -21.48435 -19.87128 -19.32139 -18.59984 -17.76120 -17.03601 -16.58681 -16.44795 -15.77329 -15.63137 -14.84171 -14.38249 -14.06015 -13.62759 -13.53599 -13.42575 -13.12925 -12.84284 -12.73888 -12.54728 -12.38913 -11.74736 -11.60926 -11.55884 -11.45559 -11.27041 -11.17355 -10.84189 -10.77479 -10.69006 -10.35057 -10.23176 -10.21070 -9.92761 -9.67950 -9.43433 -8.51094 -6.74673 -5.83061 -3.26291 1.83474 2.29223 2.40063 3.11382 3.35835 3.43708 3.45966 4.13662 4.46439 4.54979 4.73908 4.92974 5.09301 5.22114 5.24537 5.30539 5.36004 5.41060 5.50982 5.63727 5.70483 5.72481 5.97733 6.00274 6.17724 6.18739 6.27372 6.43709 6.49173 6.56883 6.67323 6.84075 6.92176 7.28773 7.51996 7.59105 7.76596 7.90255 8.40101 9.15945 9.78825 10.35248 11.26029 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.039682 B = 0.003133 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.432877 B = 8936.275560 C = 9032.645077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.073 4.073 3 H 0.117 0.883 4 C -0.103 4.103 5 C 0.484 3.516 6 O -0.512 6.512 7 O -0.515 6.515 8 C 0.464 3.536 9 O -0.509 6.509 10 O -0.353 6.353 11 C 0.097 3.903 12 C -0.128 4.128 13 C 0.148 3.852 14 N -0.593 5.593 15 C -0.255 4.255 16 H 0.068 0.932 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.904 3.096 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.175 3.825 24 C -0.153 4.153 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.411 0.589 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.021 0.979 36 H 0.254 0.746 37 H 0.022 0.978 38 H 0.093 0.907 39 H 0.053 0.947 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.573 8.929 18.481 20.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.092 4.092 3 H 0.134 0.866 4 C -0.140 4.140 5 C 0.327 3.673 6 O -0.400 6.400 7 O -0.327 6.327 8 C 0.307 3.693 9 O -0.398 6.398 10 O -0.269 6.269 11 C 0.044 3.956 12 C -0.167 4.167 13 C 0.021 3.979 14 N -0.315 5.315 15 C -0.384 4.384 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.734 3.266 20 H -0.202 1.202 21 H -0.217 1.217 22 H -0.215 1.215 23 C 0.049 3.951 24 C -0.192 4.192 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.270 0.730 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.039 0.961 36 H 0.064 0.936 37 H 0.040 0.960 38 H 0.111 0.889 39 H 0.072 0.928 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.429 8.492 18.019 19.924 hybrid contribution -0.617 -0.002 -0.200 0.649 sum -1.046 8.490 17.819 19.766 Atomic orbital electron populations 1.21931 0.91263 1.03060 1.04734 1.20732 0.99199 1.00919 0.88370 0.86557 1.21194 1.05146 1.00190 0.87510 1.23313 0.75561 0.83688 0.84745 1.90718 1.37515 1.24748 1.87068 1.84544 1.74727 1.56419 1.17037 1.23273 0.77479 0.82914 0.85648 1.90673 1.35862 1.25808 1.87425 1.86521 1.69449 1.56093 1.14853 1.22972 0.98079 0.92853 0.81740 1.22233 1.02145 0.97592 0.94769 1.20883 0.92540 0.90219 0.94225 1.44130 1.53678 1.27127 1.06610 1.19229 1.36731 0.91813 0.90666 0.91442 1.25080 1.00437 0.95862 0.98236 1.70036 1.45036 0.97569 1.41960 0.86204 0.80293 0.77802 0.82349 1.20189 1.21676 1.21519 1.20765 0.98761 0.91136 0.84467 1.22660 0.99013 0.97081 1.00491 0.90587 0.92181 0.89791 0.86476 0.86405 0.72994 0.90288 0.92244 0.91095 0.91795 0.96103 0.93567 0.95971 0.88859 0.92785 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.87 37.16 0.33 -1.22 16 2 C -0.07 -0.77 2.48 -91.77 -0.23 -1.00 16 3 H 0.12 1.14 7.96 -51.93 -0.41 0.73 16 4 C -0.10 -0.92 4.63 -27.88 -0.13 -1.04 16 5 C 0.48 4.17 8.05 36.01 0.29 4.46 16 6 O -0.51 -5.60 14.73 -18.75 -0.28 -5.88 16 7 O -0.52 -3.34 13.42 -39.28 -0.53 -3.87 16 8 C 0.46 6.72 7.23 36.01 0.26 6.99 16 9 O -0.51 -8.62 15.14 -18.75 -0.28 -8.91 16 10 O -0.35 -5.68 9.78 -39.23 -0.38 -6.07 16 11 C 0.10 1.77 2.41 -26.69 -0.06 1.71 16 12 C -0.13 -2.26 5.74 -26.61 -0.15 -2.41 16 13 C 0.15 3.06 6.51 -3.71 -0.02 3.04 16 14 N -0.59 -14.82 3.00 -172.29 -0.52 -15.33 16 15 C -0.25 -6.93 9.58 -15.06 -0.14 -7.08 16 16 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 17 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 18 N -0.90 -26.09 11.20 55.49 0.62 -25.47 16 19 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C 0.17 4.22 5.30 -3.69 -0.02 4.20 16 24 C -0.15 -3.07 5.72 -26.61 -0.15 -3.22 16 25 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.83 5.96 -51.93 -0.31 0.52 16 28 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.12 0.99 7.95 -51.93 -0.41 0.58 16 30 H 0.41 0.91 9.10 45.56 0.41 1.33 16 31 H 0.08 1.53 7.16 -51.93 -0.37 1.15 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.27 7.93 -51.93 -0.41 0.85 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 331.19 15.07 4.99 4.99 Total: -1.00 -32.44 331.19 -6.70 -39.14 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.17 Total: 0.51 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -0.12 Total: 4.40 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.10 Total: -40.81 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -1.47 Total: -24.73 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.44 -6.70 -39.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827333301.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.072 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds