Wall clock time and date at job start Tue Mar 31 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46653 * 2 1 4 4 C 1.53000 * 109.47038 * 120.00184 * 2 1 3 5 5 C 1.50699 * 109.46699 * 295.00211 * 4 2 1 6 6 O 1.20825 * 120.00678 * 359.97438 * 5 4 2 7 7 O 1.34238 * 119.99632 * 180.02562 * 5 4 2 8 8 C 1.50703 * 109.46920 * 240.00212 * 2 1 3 9 9 O 1.20825 * 119.99483 * 239.99763 * 8 2 1 10 10 O 1.34221 * 120.00192 * 60.00222 * 8 2 1 11 11 C 1.45209 * 117.00226 * 179.97438 * 10 8 2 12 12 C 1.53036 * 109.46001 * 210.00042 * 11 10 8 13 13 C 1.53191 * 109.31166 * 178.61238 * 12 11 10 14 14 N 1.46926 * 108.89452 * 54.56289 * 13 12 11 15 15 C 1.36934 * 120.63630 * 126.46229 * 14 13 12 16 16 H 1.08000 * 119.99464 * 331.92669 * 15 14 13 17 17 C 1.38810 * 120.00385 * 151.92945 * 15 14 13 18 18 N 1.31619 * 119.99689 * 343.17004 * 17 15 14 19 19 Si 1.86795 * 119.99988 * 163.17171 * 17 15 14 20 20 H 1.48503 * 109.47611 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47271 * 120.00121 * 19 17 15 22 22 H 1.48496 * 109.47355 * 239.99904 * 19 17 15 23 23 C 1.46973 * 118.71425 * 306.64410 * 14 13 12 24 24 C 1.53043 * 109.45872 * 89.92673 * 11 10 8 25 25 H 1.09006 * 109.47161 * 59.99921 * 1 2 3 26 26 H 1.09001 * 109.47353 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47529 * 299.99790 * 1 2 3 28 28 H 1.08998 * 109.47123 * 55.00032 * 4 2 1 29 29 H 1.08991 * 109.46781 * 175.00019 * 4 2 1 30 30 H 0.96698 * 116.99737 * 179.97438 * 7 5 4 31 31 H 1.09004 * 109.44332 * 329.96695 * 11 10 8 32 32 H 1.09001 * 109.50071 * 58.66026 * 12 11 10 33 33 H 1.09005 * 109.49477 * 298.56362 * 12 11 10 34 34 H 1.09000 * 109.58954 * 174.41929 * 13 12 11 35 35 H 1.08996 * 109.58649 * 294.70243 * 13 12 11 36 36 H 0.97000 * 119.99637 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.46458 * 293.56938 * 23 14 13 38 38 H 1.08992 * 109.71060 * 173.28601 * 23 14 13 39 39 H 1.08995 * 109.49931 * 301.34367 * 24 11 10 40 40 H 1.09003 * 109.49592 * 61.43807 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6412 0.0570 2.4765 6 8 1.0139 1.0835 2.3637 7 8 1.9838 -0.3897 3.6952 8 6 2.0323 -0.7104 -1.2305 9 8 2.7269 -1.6927 -1.1196 10 8 1.7080 -0.2518 -2.4496 11 6 2.2277 -0.9857 -3.5897 12 6 2.4324 -0.0255 -4.7637 13 6 3.0130 -0.7965 -5.9534 14 7 2.1382 -1.9382 -6.2532 15 6 1.6444 -2.1260 -7.5165 16 1 1.4922 -1.2784 -8.1683 17 6 1.3394 -3.4057 -7.9594 18 7 1.8183 -4.4538 -7.3233 19 14 0.2496 -3.6404 -9.4583 20 1 -0.1562 -2.3137 -9.9879 21 1 0.9986 -4.3832 -10.5035 22 1 -0.9605 -4.4109 -9.0747 23 6 1.8001 -2.8723 -5.1700 24 6 1.2330 -2.0780 -3.9892 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6053 -1.7198 1.2951 29 1 3.1262 -0.7995 1.2055 30 1 1.7059 0.1438 4.4523 31 1 3.1809 -1.4423 -3.3235 32 1 3.1228 0.7654 -4.4708 33 1 1.4752 0.4127 -5.0464 34 1 3.0683 -0.1405 -6.8221 35 1 4.0110 -1.1566 -5.7034 36 1 1.6055 -5.3480 -7.6330 37 1 2.6981 -3.4039 -4.8553 38 1 1.0560 -3.5875 -5.5203 39 1 1.0698 -2.7479 -3.1450 40 1 0.2872 -1.6204 -4.2792 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827333301.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:37 Heat of formation + Delta-G solvation = -190.414146 kcal Electronic energy + Delta-G solvation = -22955.891902 eV Core-core repulsion = 19349.104480 eV Total energy + Delta-G solvation = -3606.787422 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.96427 -41.16468 -39.20750 -37.47536 -37.20070 -35.52640 -34.55350 -32.09009 -31.52489 -29.51931 -27.28688 -25.81044 -24.03992 -23.89204 -22.61148 -21.07844 -20.81215 -19.37373 -18.87862 -18.71003 -17.73631 -17.24951 -16.94630 -16.83569 -16.54656 -15.71803 -15.41319 -15.25628 -14.94697 -14.58838 -14.49748 -14.26174 -14.00698 -13.66352 -13.31360 -13.25228 -13.08128 -12.83000 -12.64555 -12.45135 -12.39422 -12.32945 -12.25895 -12.11865 -11.92595 -11.84698 -11.60826 -11.51609 -11.27147 -11.06481 -10.57355 -8.76230 -7.90807 -5.37079 1.12579 1.18449 1.43347 1.47842 1.49042 1.59695 2.28176 2.50136 3.25490 3.30869 3.56175 3.69865 3.77793 3.80283 3.88631 4.13394 4.18021 4.38106 4.44160 4.51147 4.56741 4.60126 4.72389 4.82252 4.87179 4.88446 4.95117 4.96246 5.06333 5.23234 5.25324 5.37062 5.51691 5.62621 5.65174 5.67108 6.35788 6.67745 7.00173 7.10164 7.79574 8.32296 9.17041 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.039682 B = 0.003133 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.432877 B = 8936.275560 C = 9032.645077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.064 4.064 3 H 0.130 0.870 4 C -0.103 4.103 5 C 0.496 3.504 6 O -0.537 6.537 7 O -0.512 6.512 8 C 0.464 3.536 9 O -0.534 6.534 10 O -0.349 6.349 11 C 0.104 3.896 12 C -0.115 4.115 13 C 0.143 3.857 14 N -0.611 5.611 15 C -0.264 4.264 16 H 0.073 0.927 17 C -0.052 4.052 18 N -0.937 5.937 19 Si 0.970 3.030 20 H -0.264 1.264 21 H -0.292 1.292 22 H -0.291 1.291 23 C 0.184 3.816 24 C -0.139 4.139 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.431 0.569 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.018 0.982 36 H 0.251 0.749 37 H -0.003 1.003 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.994 10.615 19.536 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 H 0.147 0.853 4 C -0.140 4.140 5 C 0.339 3.661 6 O -0.428 6.428 7 O -0.326 6.326 8 C 0.308 3.692 9 O -0.424 6.424 10 O -0.265 6.265 11 C 0.050 3.950 12 C -0.154 4.154 13 C 0.018 3.982 14 N -0.335 5.335 15 C -0.393 4.393 16 H 0.091 0.909 17 C -0.247 4.247 18 N -0.582 5.582 19 Si 0.798 3.202 20 H -0.188 1.188 21 H -0.219 1.219 22 H -0.217 1.217 23 C 0.058 3.942 24 C -0.178 4.178 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.293 0.707 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.036 0.964 36 H 0.060 0.940 37 H 0.015 0.985 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.845 10.216 19.114 21.689 hybrid contribution -0.423 -0.520 -0.421 0.792 sum -1.268 9.697 18.693 21.096 Atomic orbital electron populations 1.21911 0.90721 1.03174 1.04799 1.20785 0.99442 1.01173 0.86922 0.85260 1.21166 1.05515 1.00251 0.87105 1.23061 0.74867 0.82972 0.85168 1.90718 1.38785 1.25786 1.87492 1.84496 1.74302 1.56675 1.17109 1.24070 0.76676 0.82609 0.85843 1.90672 1.37059 1.27090 1.87559 1.86532 1.69466 1.55525 1.15009 1.22657 0.96777 0.92590 0.82998 1.22044 1.02812 0.97518 0.93038 1.21050 0.91912 0.89219 0.96043 1.44387 1.54762 1.28152 1.06206 1.19584 1.36224 0.92015 0.91520 0.90938 1.25864 1.01928 0.95673 1.01238 1.70191 1.46570 0.97747 1.43741 0.85175 0.78164 0.77966 0.78934 1.18801 1.21929 1.21749 1.20477 0.96835 0.91179 0.85758 1.22404 0.99219 0.97422 0.98803 0.90947 0.92081 0.89249 0.86035 0.85848 0.70687 0.91438 0.88953 0.90951 0.90898 0.96363 0.94028 0.98491 0.92052 0.92375 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.87 71.98 0.64 -2.09 16 2 C -0.06 -1.23 2.48 -11.54 -0.03 -1.26 16 3 H 0.13 2.20 7.96 -2.38 -0.02 2.18 16 4 C -0.10 -1.62 4.63 29.85 0.14 -1.49 16 5 C 0.50 7.41 8.05 71.24 0.57 7.98 16 6 O -0.54 -10.60 14.73 21.97 0.32 -10.28 16 7 O -0.51 -5.34 13.42 -51.50 -0.69 -6.03 16 8 C 0.46 12.69 7.23 71.24 0.51 13.20 16 9 O -0.53 -17.56 15.14 21.97 0.33 -17.23 16 10 O -0.35 -10.59 9.78 -51.33 -0.50 -11.09 16 11 C 0.10 3.68 2.41 30.62 0.07 3.75 16 12 C -0.12 -3.83 5.74 30.67 0.18 -3.65 16 13 C 0.14 5.80 6.51 86.36 0.56 6.37 16 14 N -0.61 -30.80 3.00 -699.01 -2.10 -32.90 16 15 C -0.26 -14.38 9.58 84.03 0.81 -13.57 16 16 H 0.07 3.81 7.88 -2.91 -0.02 3.78 16 17 C -0.05 -2.88 4.92 84.86 0.42 -2.47 16 18 N -0.94 -55.71 11.20 21.65 0.24 -55.47 16 19 Si 0.97 44.64 29.59 68.60 2.03 46.67 16 20 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 23 C 0.18 9.12 5.30 86.35 0.46 9.58 16 24 C -0.14 -5.58 5.72 30.67 0.18 -5.40 16 25 H 0.07 1.38 8.11 -2.38 -0.02 1.36 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.09 1.59 5.96 -2.39 -0.01 1.58 16 28 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.12 1.84 7.95 -2.39 -0.02 1.82 16 30 H 0.43 0.77 9.10 -74.06 -0.67 0.09 16 31 H 0.07 2.57 7.16 -2.39 -0.02 2.55 16 32 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 34 H 0.07 2.79 7.93 -2.39 -0.02 2.77 16 35 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 37 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 39 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 40 H 0.06 2.61 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -69.75 331.19 4.52 -65.23 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.38 Total: 10.14 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 4.50 Total: 10.95 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -1.86 Total: -88.37 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: -0.54 Total: -44.62 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -69.75 4.52 -65.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827333301.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.180 kcal (2) G-P(sol) polarization free energy of solvation -69.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds