Wall clock time and date at job start Tue Mar 31 2020 05:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99857 * 2 1 4 4 H 1.48501 * 109.47107 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47211 * 120.00235 * 3 2 1 6 6 H 1.48504 * 109.46781 * 240.00083 * 3 2 1 7 7 C 1.37879 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99823 * 183.27817 * 7 2 1 9 9 C 1.50691 * 119.99985 * 3.27627 * 7 2 1 10 10 O 1.42905 * 110.88796 * 61.59580 * 9 7 2 11 11 C 1.55163 * 111.00511 * 185.47274 * 9 7 2 12 12 C 1.54319 * 102.93944 * 153.57584 * 11 9 7 13 13 N 1.47020 * 107.27735 * 337.80973 * 12 11 9 14 14 C 1.34773 * 125.64762 * 178.99287 * 13 12 11 15 15 O 1.21516 * 119.99752 * 179.97438 * 14 13 12 16 16 O 1.34638 * 120.00278 * 359.97438 * 14 13 12 17 17 C 1.45199 * 117.00070 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47236 * 180.02562 * 17 16 14 19 19 H 1.08999 * 110.32949 * 307.24405 * 18 17 16 20 20 C 1.54476 * 110.37274 * 185.00247 * 18 17 16 21 21 C 1.54510 * 104.06141 * 217.18998 * 20 18 17 22 22 C 1.54473 * 104.06308 * 359.97438 * 21 20 18 23 23 O 1.44424 * 110.37256 * 69.61640 * 18 17 16 24 24 C 1.47464 * 108.71836 * 358.97767 * 13 12 11 25 25 H 0.96994 * 120.00035 * 174.71564 * 1 2 3 26 26 H 0.96700 * 114.00102 * 295.64841 * 10 9 7 27 27 H 1.08993 * 110.71844 * 271.94610 * 11 9 7 28 28 H 1.09000 * 110.71327 * 35.21775 * 11 9 7 29 29 H 1.09005 * 109.87933 * 97.22881 * 12 11 9 30 30 H 1.09004 * 109.88255 * 218.23126 * 12 11 9 31 31 H 1.09003 * 109.47021 * 300.00416 * 17 16 14 32 32 H 1.09001 * 109.47040 * 59.99432 * 17 16 14 33 33 H 1.09002 * 110.51231 * 335.82920 * 20 18 17 34 34 H 1.08997 * 110.51562 * 98.40534 * 20 18 17 35 35 H 1.08996 * 110.51131 * 118.64460 * 21 20 18 36 36 H 1.09000 * 110.50581 * 241.21532 * 21 20 18 37 37 H 1.08994 * 110.37594 * 142.81415 * 22 21 20 38 38 H 1.09002 * 110.37141 * 265.04111 * 22 21 20 39 39 H 1.09006 * 110.34847 * 265.24996 * 24 13 12 40 40 H 1.09001 * 110.40473 * 142.92006 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6965 1.2124 6 1 3.1029 1.6964 -1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0832 -1.1949 0.0530 9 6 1.2529 -2.4980 -0.0757 10 8 0.5073 -2.5869 -1.2916 11 6 2.2163 -3.7048 0.0754 12 6 1.3019 -4.8072 0.6500 13 7 0.1578 -4.1378 1.2860 14 6 -0.8775 -4.7551 1.8889 15 8 -1.7720 -4.0980 2.3837 16 8 -0.9208 -6.0997 1.9429 17 6 -2.0653 -6.6962 2.6081 18 6 -1.9397 -8.2205 2.5706 19 1 -1.7761 -8.5620 1.5485 20 6 -3.2060 -8.8792 3.1612 21 6 -2.6674 -10.1083 3.9271 22 6 -1.1395 -10.0471 3.7081 23 8 -0.8624 -8.6575 3.4276 24 6 0.3306 -2.6791 1.1556 25 1 -0.4850 -0.8364 -0.0774 26 1 -0.1948 -1.9268 -1.3717 27 1 2.6168 -4.0022 -0.8937 28 1 3.0218 -3.4704 0.7713 29 1 0.9524 -5.4552 -0.1538 30 1 1.8481 -5.3944 1.3883 31 1 -2.0990 -6.3601 3.6445 32 1 -2.9801 -6.3939 2.0983 33 1 -3.7097 -8.1946 3.8437 34 1 -3.8823 -9.1892 2.3646 35 1 -2.9049 -10.0313 4.9881 36 1 -3.0783 -11.0279 3.5105 37 1 -0.6140 -10.3641 4.6088 38 1 -0.8522 -10.6719 2.8623 39 1 0.8056 -2.2724 2.0484 40 1 -0.6314 -2.1964 0.9834 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828045634.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:35 Heat of formation + Delta-G solvation = -171.421636 kcal Electronic energy + Delta-G solvation = -23217.500158 eV Core-core repulsion = 19611.536313 eV Total energy + Delta-G solvation = -3605.963845 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.22545 -39.50658 -38.15342 -35.87976 -34.65074 -32.47477 -32.30536 -31.19572 -30.18223 -27.78429 -26.09768 -24.91559 -22.77966 -22.15278 -21.30148 -20.25855 -19.73173 -18.18438 -17.38868 -16.97378 -16.63379 -16.21843 -15.64049 -15.57140 -15.01887 -14.37743 -14.06419 -13.87032 -13.67169 -13.54921 -12.96410 -12.84781 -12.62370 -12.12476 -12.01857 -11.86445 -11.66315 -11.58494 -11.21299 -11.07198 -10.96715 -10.87680 -10.67065 -10.48366 -10.42113 -10.15973 -10.07346 -10.02123 -9.46547 -8.67927 -8.39128 -8.00555 -6.57061 -4.41526 2.46272 3.28415 3.35788 3.37351 3.56394 3.58396 4.11478 4.25955 4.36649 4.54448 4.60706 4.85751 4.93334 4.97900 5.04501 5.17921 5.30927 5.32454 5.39690 5.45803 5.54520 5.59667 5.60272 5.65708 5.71491 5.81712 6.06122 6.25872 6.51726 6.53342 6.59663 6.65512 6.74537 6.88551 7.02375 7.76888 8.02708 8.16837 8.53111 8.74563 8.90253 9.31045 10.72188 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.041010 B = 0.003392 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.600107 B = 8253.730602 C = 8525.635322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.029 3.971 3 Si 1.074 2.926 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.611 4.611 8 H 0.063 0.937 9 C 0.228 3.772 10 O -0.580 6.580 11 C -0.110 4.110 12 C 0.109 3.891 13 N -0.593 5.593 14 C 0.658 3.342 15 O -0.582 6.582 16 O -0.365 6.365 17 C 0.093 3.907 18 C 0.076 3.924 19 H 0.081 0.919 20 C -0.148 4.148 21 C -0.154 4.154 22 C 0.042 3.958 23 O -0.362 6.362 24 C 0.101 3.899 25 H 0.267 0.733 26 H 0.369 0.631 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.331 -17.884 5.063 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.177 4.177 3 Si 0.901 3.099 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.649 4.649 8 H 0.082 0.918 9 C 0.188 3.812 10 O -0.387 6.387 11 C -0.148 4.148 12 C -0.013 4.013 13 N -0.332 5.332 14 C 0.412 3.588 15 O -0.472 6.472 16 O -0.279 6.279 17 C 0.018 3.982 18 C 0.018 3.982 19 H 0.099 0.901 20 C -0.186 4.186 21 C -0.192 4.192 22 C -0.035 4.035 23 O -0.281 6.281 24 C -0.020 4.020 25 H 0.081 0.919 26 H 0.218 0.782 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.320 -16.527 5.315 17.675 hybrid contribution -0.502 -1.427 0.099 1.516 sum -3.822 -17.953 5.414 19.137 Atomic orbital electron populations 1.71004 1.06825 1.30817 1.45343 1.26053 0.96384 1.03241 0.91973 0.83457 0.74912 0.74725 0.76784 1.20548 1.21141 1.21106 1.22272 0.95182 0.90756 1.56671 0.91828 1.19969 0.87338 0.93685 0.80211 1.86299 1.51341 1.59525 1.41563 1.22561 0.97217 0.94086 1.00908 1.22009 0.87040 0.95857 0.96440 1.47487 1.20365 1.08895 1.56500 1.17637 0.82119 0.80330 0.78709 1.90963 1.38635 1.65603 1.52014 1.86258 1.46990 1.20812 1.73874 1.22918 0.87062 0.90026 0.98202 1.23061 0.86901 0.92724 0.95487 0.90069 1.22904 0.97438 0.97483 1.00741 1.22932 0.96226 0.98440 1.01582 1.23421 0.94881 0.84044 1.01187 1.89268 1.46161 1.24645 1.68055 1.23658 1.01793 0.75058 1.01466 0.91864 0.78245 0.90341 0.89988 0.91919 0.92107 0.90496 0.89852 0.90027 0.89781 0.90442 0.90321 0.88978 0.92115 0.90956 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.25 13.06 55.43 0.72 -24.53 16 2 C 0.03 0.77 5.30 -17.82 -0.09 0.68 16 3 Si 1.07 23.76 29.91 -169.99 -5.08 18.67 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.61 -16.08 8.26 -34.44 -0.28 -16.36 16 8 H 0.06 1.64 7.79 -52.49 -0.41 1.23 16 9 C 0.23 5.55 0.83 -89.63 -0.07 5.47 16 10 O -0.58 -14.58 13.15 -35.23 -0.46 -15.04 16 11 C -0.11 -2.23 6.13 -24.90 -0.15 -2.38 16 12 C 0.11 2.08 6.89 -3.07 -0.02 2.06 16 13 N -0.59 -12.97 3.33 -176.27 -0.59 -13.56 16 14 C 0.66 14.31 8.62 54.05 0.47 14.78 16 15 O -0.58 -14.04 16.39 -19.29 -0.32 -14.35 16 16 O -0.37 -6.74 9.82 -41.07 -0.40 -7.14 16 17 C 0.09 1.34 5.08 37.16 0.19 1.53 16 18 C 0.08 0.87 3.58 -25.96 -0.09 0.78 16 19 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 20 C -0.15 -1.19 6.63 -25.16 -0.17 -1.36 16 21 C -0.15 -1.06 7.09 -25.17 -0.18 -1.24 16 22 C 0.04 0.36 7.63 37.93 0.29 0.65 16 23 O -0.36 -4.73 11.35 -35.23 -0.40 -5.13 16 24 C 0.10 2.44 5.32 -2.51 -0.01 2.43 16 25 H 0.27 7.38 3.62 -40.82 -0.15 7.23 16 26 H 0.37 9.27 6.74 45.56 0.31 9.57 16 27 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.08 1.57 8.03 -51.93 -0.42 1.15 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 0.64 7.87 -51.93 -0.41 0.23 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 1.81 8.03 -51.93 -0.42 1.39 16 40 H 0.08 2.03 6.25 -51.93 -0.32 1.71 16 LS Contribution 327.56 15.07 4.94 4.94 Total: -1.00 -32.03 327.56 -6.99 -39.02 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -5.26 Total: 10.09 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -0.13 Total: 7.03 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.14 Total: -38.09 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -1.58 Total: -41.67 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -5.08 Total: 18.67 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.03 -6.99 -39.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828045634.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.402 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds