Wall clock time and date at job start Tue Mar 31 2020 05:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99857 * 2 1 4 4 H 1.48501 * 109.47107 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47211 * 120.00235 * 3 2 1 6 6 H 1.48504 * 109.46781 * 240.00083 * 3 2 1 7 7 C 1.37879 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99823 * 183.27817 * 7 2 1 9 9 C 1.50691 * 119.99985 * 3.27627 * 7 2 1 10 10 O 1.42905 * 110.88796 * 61.59580 * 9 7 2 11 11 C 1.55163 * 111.00511 * 185.47274 * 9 7 2 12 12 C 1.54319 * 102.93944 * 153.57584 * 11 9 7 13 13 N 1.47020 * 107.27735 * 337.80973 * 12 11 9 14 14 C 1.34773 * 125.64762 * 178.99287 * 13 12 11 15 15 O 1.21516 * 119.99752 * 179.97438 * 14 13 12 16 16 O 1.34638 * 120.00278 * 359.97438 * 14 13 12 17 17 C 1.45199 * 117.00070 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47236 * 180.02562 * 17 16 14 19 19 H 1.08999 * 110.32949 * 307.24405 * 18 17 16 20 20 C 1.54476 * 110.37274 * 185.00247 * 18 17 16 21 21 C 1.54510 * 104.06141 * 217.18998 * 20 18 17 22 22 C 1.54473 * 104.06308 * 359.97438 * 21 20 18 23 23 O 1.44424 * 110.37256 * 69.61640 * 18 17 16 24 24 C 1.47464 * 108.71836 * 358.97767 * 13 12 11 25 25 H 0.96994 * 120.00035 * 174.71564 * 1 2 3 26 26 H 0.96700 * 114.00102 * 295.64841 * 10 9 7 27 27 H 1.08993 * 110.71844 * 271.94610 * 11 9 7 28 28 H 1.09000 * 110.71327 * 35.21775 * 11 9 7 29 29 H 1.09005 * 109.87933 * 97.22881 * 12 11 9 30 30 H 1.09004 * 109.88255 * 218.23126 * 12 11 9 31 31 H 1.09003 * 109.47021 * 300.00416 * 17 16 14 32 32 H 1.09001 * 109.47040 * 59.99432 * 17 16 14 33 33 H 1.09002 * 110.51231 * 335.82920 * 20 18 17 34 34 H 1.08997 * 110.51562 * 98.40534 * 20 18 17 35 35 H 1.08996 * 110.51131 * 118.64460 * 21 20 18 36 36 H 1.09000 * 110.50581 * 241.21532 * 21 20 18 37 37 H 1.08994 * 110.37594 * 142.81415 * 22 21 20 38 38 H 1.09002 * 110.37141 * 265.04111 * 22 21 20 39 39 H 1.09006 * 110.34847 * 265.24996 * 24 13 12 40 40 H 1.09001 * 110.40473 * 142.92006 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6965 1.2124 6 1 3.1029 1.6964 -1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0832 -1.1949 0.0530 9 6 1.2529 -2.4980 -0.0757 10 8 0.5073 -2.5869 -1.2916 11 6 2.2163 -3.7048 0.0754 12 6 1.3019 -4.8072 0.6500 13 7 0.1578 -4.1378 1.2860 14 6 -0.8775 -4.7551 1.8889 15 8 -1.7720 -4.0980 2.3837 16 8 -0.9208 -6.0997 1.9429 17 6 -2.0653 -6.6962 2.6081 18 6 -1.9397 -8.2205 2.5706 19 1 -1.7761 -8.5620 1.5485 20 6 -3.2060 -8.8792 3.1612 21 6 -2.6674 -10.1083 3.9271 22 6 -1.1395 -10.0471 3.7081 23 8 -0.8624 -8.6575 3.4276 24 6 0.3306 -2.6791 1.1556 25 1 -0.4850 -0.8364 -0.0774 26 1 -0.1948 -1.9268 -1.3717 27 1 2.6168 -4.0022 -0.8937 28 1 3.0218 -3.4704 0.7713 29 1 0.9524 -5.4552 -0.1538 30 1 1.8481 -5.3944 1.3883 31 1 -2.0990 -6.3601 3.6445 32 1 -2.9801 -6.3939 2.0983 33 1 -3.7097 -8.1946 3.8437 34 1 -3.8823 -9.1892 2.3646 35 1 -2.9049 -10.0313 4.9881 36 1 -3.0783 -11.0279 3.5105 37 1 -0.6140 -10.3641 4.6088 38 1 -0.8522 -10.6719 2.8623 39 1 0.8056 -2.2724 2.0484 40 1 -0.6314 -2.1964 0.9834 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828045634.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:35 Heat of formation + Delta-G solvation = -194.766315 kcal Electronic energy + Delta-G solvation = -23218.512459 eV Core-core repulsion = 19611.536313 eV Total energy + Delta-G solvation = -3606.976146 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.78867 -40.50938 -39.82285 -37.50283 -36.50760 -34.33665 -33.25050 -32.39771 -31.61343 -29.58523 -27.48107 -26.45165 -24.38970 -23.02358 -22.15189 -21.87682 -21.50010 -20.07957 -19.07573 -18.28074 -18.03528 -17.29644 -16.92629 -16.70058 -16.59125 -16.01342 -15.66972 -15.27234 -15.07361 -14.83815 -14.64809 -14.31919 -14.11729 -13.73829 -13.13905 -13.07186 -12.83418 -12.73224 -12.63167 -12.54384 -12.39196 -12.31358 -12.29339 -11.92019 -11.81079 -11.80808 -11.55155 -11.36180 -10.83636 -10.67577 -10.32779 -9.80208 -8.66336 -6.52784 0.91222 1.56440 1.58034 1.63624 1.83546 2.53278 2.77838 2.79200 2.98253 3.53067 3.54629 3.69258 3.84093 3.87840 3.88322 3.98964 4.11247 4.17215 4.27105 4.37036 4.38368 4.39246 4.50837 4.70174 4.72101 4.82908 4.84797 4.91592 4.98566 5.05147 5.08532 5.12782 5.16299 5.23215 5.77706 5.81530 6.07537 6.33392 6.43821 6.88588 7.05131 7.28134 8.63506 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.041010 B = 0.003392 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.600107 B = 8253.730602 C = 8525.635322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.016 4.016 3 Si 1.118 2.882 4 H -0.287 1.287 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.623 4.623 8 H 0.067 0.933 9 C 0.213 3.787 10 O -0.583 6.583 11 C -0.103 4.103 12 C 0.112 3.888 13 N -0.598 5.598 14 C 0.657 3.343 15 O -0.614 6.614 16 O -0.361 6.361 17 C 0.084 3.916 18 C 0.078 3.922 19 H 0.088 0.912 20 C -0.144 4.144 21 C -0.147 4.147 22 C 0.033 3.967 23 O -0.399 6.399 24 C 0.114 3.886 25 H 0.259 0.741 26 H 0.364 0.636 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.671 -19.741 5.133 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.216 4.216 3 Si 0.940 3.060 4 H -0.213 1.213 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.661 4.661 8 H 0.085 0.915 9 C 0.173 3.827 10 O -0.391 6.391 11 C -0.140 4.140 12 C -0.010 4.010 13 N -0.338 5.338 14 C 0.412 3.588 15 O -0.506 6.506 16 O -0.274 6.274 17 C 0.009 3.991 18 C 0.020 3.980 19 H 0.106 0.894 20 C -0.181 4.181 21 C -0.185 4.185 22 C -0.043 4.043 23 O -0.319 6.319 24 C -0.008 4.008 25 H 0.073 0.927 26 H 0.212 0.788 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.101 0.899 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.641 -18.452 5.384 19.402 hybrid contribution -0.731 -0.946 0.107 1.200 sum -3.371 -19.398 5.491 20.440 Atomic orbital electron populations 1.71083 1.07794 1.30564 1.47187 1.27345 0.96433 1.06634 0.91204 0.82899 0.74103 0.71031 0.77997 1.21292 1.19419 1.19451 1.22605 0.95555 0.91830 1.56128 0.91483 1.20172 0.87910 0.94954 0.79656 1.86283 1.51293 1.59340 1.42136 1.22578 0.96838 0.92520 1.02099 1.22153 0.86025 0.95470 0.97329 1.47476 1.21344 1.08196 1.56775 1.17736 0.81563 0.81346 0.78168 1.90931 1.39796 1.66637 1.53277 1.86277 1.48690 1.18512 1.73966 1.23342 0.86221 0.92057 0.97433 1.23147 0.88485 0.90296 0.96064 0.89449 1.22946 0.96098 0.97668 1.01436 1.22939 0.94794 0.98804 1.01955 1.23677 0.96397 0.82107 1.02139 1.89224 1.47122 1.27130 1.68431 1.23251 1.00057 0.76543 1.00902 0.92705 0.78750 0.89026 0.88771 0.90781 0.89453 0.91383 0.88982 0.90129 0.87622 0.89932 0.87958 0.88064 0.90995 0.92436 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.05 13.06 21.45 0.28 -52.77 16 2 C -0.02 -0.87 5.30 84.65 0.45 -0.42 16 3 Si 1.12 47.46 29.91 68.60 2.05 49.51 16 4 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 5 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 6 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 7 C -0.62 -32.69 8.26 25.60 0.21 -32.48 16 8 H 0.07 3.40 7.79 -2.91 -0.02 3.37 16 9 C 0.21 10.36 0.83 -10.15 -0.01 10.35 16 10 O -0.58 -29.57 13.15 -148.98 -1.96 -31.53 16 11 C -0.10 -3.99 6.13 31.78 0.19 -3.80 16 12 C 0.11 4.06 6.89 86.73 0.60 4.65 16 13 N -0.60 -26.14 3.33 -942.00 -3.13 -29.27 16 14 C 0.66 28.76 8.62 129.79 1.12 29.88 16 15 O -0.61 -30.33 16.39 19.79 0.32 -30.01 16 16 O -0.36 -13.14 9.82 -54.76 -0.54 -13.68 16 17 C 0.08 2.38 5.08 71.98 0.37 2.75 16 18 C 0.08 1.66 3.58 31.10 0.11 1.78 16 19 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 20 C -0.14 -1.97 6.63 31.61 0.21 -1.76 16 21 C -0.15 -1.60 7.09 31.61 0.22 -1.38 16 22 C 0.03 0.50 7.63 72.48 0.55 1.05 16 23 O -0.40 -9.94 11.35 -148.98 -1.69 -11.63 16 24 C 0.11 5.66 5.32 86.85 0.46 6.12 16 25 H 0.26 14.88 3.62 -92.71 -0.34 14.54 16 26 H 0.36 18.89 6.74 -74.06 -0.50 18.39 16 27 H 0.09 3.31 8.14 -2.39 -0.02 3.30 16 28 H 0.09 3.41 8.03 -2.39 -0.02 3.39 16 29 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 30 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.08 1.13 7.87 -2.39 -0.02 1.11 16 34 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 2.96 8.03 -2.38 -0.02 2.94 16 40 H 0.05 2.62 6.25 -2.39 -0.01 2.61 16 Total: -1.00 -69.46 327.56 0.80 -68.66 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: 0.98 Total: 33.99 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: 4.49 Total: 16.74 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -2.85 Total: -82.05 kcal Atomic # 8 Polarization: -82.98 SS G_CDS: -3.86 Total: -86.85 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.05 Total: 49.51 kcal Total: -69.46 0.80 -68.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828045634.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.105 kcal (2) G-P(sol) polarization free energy of solvation -69.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds