Wall clock time and date at job start Tue Mar 31 2020 05:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99801 * 2 1 4 4 H 1.48507 * 109.46864 * 275.00180 * 3 2 1 5 5 H 1.48494 * 109.47191 * 35.00077 * 3 2 1 6 6 H 1.48499 * 109.47083 * 155.00620 * 3 2 1 7 7 C 1.37872 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99821 * 184.92583 * 7 2 1 9 9 C 1.50699 * 119.99958 * 4.91736 * 7 2 1 10 10 O 1.42906 * 110.88813 * 298.63749 * 9 7 2 11 11 C 1.55165 * 111.00480 * 174.75819 * 9 7 2 12 12 C 1.54318 * 102.94193 * 206.38550 * 11 9 7 13 13 N 1.47029 * 107.27252 * 22.19204 * 12 11 9 14 14 C 1.34772 * 125.64738 * 181.02155 * 13 12 11 15 15 O 1.21512 * 119.99981 * 180.02562 * 14 13 12 16 16 O 1.34639 * 120.00484 * 0.02562 * 14 13 12 17 17 C 1.45192 * 117.00322 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47297 * 180.02562 * 17 16 14 19 19 H 1.08998 * 109.82256 * 305.56763 * 18 17 16 20 20 C 1.54381 * 109.83282 * 184.58932 * 18 17 16 21 21 C 1.55304 * 102.25427 * 219.13185 * 20 18 17 22 22 C 1.54948 * 100.94279 * 34.12737 * 21 20 18 23 23 O 1.43232 * 109.83007 * 66.45553 * 18 17 16 24 24 C 1.47429 * 108.70048 * 1.28897 * 13 12 11 25 25 H 0.96996 * 120.00400 * 359.97438 * 1 2 3 26 26 H 0.96698 * 113.99634 * 56.11966 * 10 9 7 27 27 H 1.08996 * 110.71788 * 88.01960 * 11 9 7 28 28 H 1.09002 * 110.86892 * 324.82065 * 11 9 7 29 29 H 1.09001 * 109.88518 * 262.77531 * 12 11 9 30 30 H 1.09000 * 110.00868 * 141.67994 * 12 11 9 31 31 H 1.09006 * 109.47478 * 300.00276 * 17 16 14 32 32 H 1.09001 * 109.47194 * 60.00586 * 17 16 14 33 33 H 1.09008 * 110.84499 * 337.31768 * 20 18 17 34 34 H 1.08998 * 110.84782 * 100.93804 * 20 18 17 35 35 H 1.08999 * 111.12264 * 276.21433 * 21 20 18 36 36 H 1.09002 * 111.16513 * 152.06661 * 21 20 18 37 37 H 1.08999 * 110.30931 * 204.63983 * 22 21 20 38 38 H 1.09004 * 110.38846 * 82.51841 * 22 21 20 39 39 H 1.08996 * 110.36693 * 94.48287 * 24 13 12 40 40 H 1.09008 * 110.36011 * 216.80598 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3909 2.1075 -1.3948 5 1 1.5034 2.6199 0.8030 6 1 3.5956 1.4120 0.5916 7 6 2.0046 -1.1940 -0.0005 8 1 3.0816 -1.1957 0.0798 9 6 1.2552 -2.4966 -0.1130 10 8 0.3618 -2.6673 0.9892 11 6 2.2355 -3.6943 -0.2248 12 6 1.4060 -4.7498 -0.9859 13 7 0.3485 -4.0327 -1.7132 14 6 -0.5998 -4.6019 -2.4834 15 8 -1.4274 -3.9080 -3.0403 16 8 -0.6301 -5.9392 -2.6359 17 6 -1.6795 -6.4830 -3.4792 18 6 -1.5537 -8.0069 -3.5314 19 1 -0.5482 -8.2841 -3.8478 20 6 -2.5927 -8.5848 -4.5161 21 6 -3.0598 -9.8725 -3.7843 22 6 -2.9792 -9.4162 -2.3057 23 8 -1.8267 -8.5614 -2.2393 24 6 0.5011 -2.5874 -1.4656 25 1 -0.4850 0.8400 0.0004 26 1 -0.2699 -1.9434 1.0991 27 1 2.5115 -4.0602 0.7640 28 1 3.1231 -3.4177 -0.7938 29 1 0.9605 -5.4508 -0.2799 30 1 2.0416 -5.2867 -1.6901 31 1 -2.6524 -6.2129 -3.0684 32 1 -1.5844 -6.0756 -4.4858 33 1 -3.4241 -7.8932 -4.6529 34 1 -2.1281 -8.8285 -5.4715 35 1 -2.3799 -10.7024 -3.9768 36 1 -4.0817 -10.1331 -4.0599 37 1 -2.8499 -10.2776 -1.6504 38 1 -3.8770 -8.8630 -2.0295 39 1 1.0866 -2.1260 -2.2608 40 1 -0.4761 -2.1107 -1.3873 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828045635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:37 Heat of formation + Delta-G solvation = -197.308004 kcal Electronic energy + Delta-G solvation = -23216.246529 eV Core-core repulsion = 19609.160167 eV Total energy + Delta-G solvation = -3607.086362 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.65442 -40.47275 -39.51922 -37.34473 -36.16471 -34.20912 -33.25841 -32.27801 -31.50273 -29.66069 -27.52188 -26.47589 -24.40139 -22.76156 -22.18485 -21.60640 -21.40282 -19.28208 -18.92590 -18.35213 -17.93925 -17.36941 -17.04213 -16.91957 -16.26504 -15.86908 -15.68578 -14.98343 -14.90734 -14.65731 -14.51108 -14.08743 -13.80792 -13.49693 -13.36947 -13.25714 -12.86269 -12.70521 -12.61347 -12.50365 -12.34375 -12.22377 -12.19672 -12.12425 -11.79350 -11.69877 -11.69335 -11.24077 -10.66718 -10.58856 -10.37856 -9.63501 -8.26507 -6.43384 1.05210 1.44394 1.46580 1.56804 1.68254 2.38736 2.77952 2.95276 3.00206 3.48309 3.71950 3.76995 3.89241 4.01097 4.07103 4.11870 4.15532 4.28082 4.31022 4.36955 4.51810 4.64424 4.69612 4.79492 4.84418 4.91247 4.96069 5.00590 5.05395 5.17225 5.22021 5.23233 5.36067 5.44494 5.74489 6.02448 6.03956 6.47577 6.65826 7.17149 7.27800 7.37201 8.79647 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.039115 B = 0.003456 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.669717 B = 8099.078049 C = 8322.822444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.968 3.032 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.232 3.768 10 O -0.590 6.590 11 C -0.110 4.110 12 C 0.113 3.887 13 N -0.598 5.598 14 C 0.654 3.346 15 O -0.617 6.617 16 O -0.361 6.361 17 C 0.068 3.932 18 C 0.083 3.917 19 H 0.099 0.901 20 C -0.142 4.142 21 C -0.143 4.143 22 C 0.033 3.967 23 O -0.402 6.402 24 C 0.124 3.876 25 H 0.271 0.729 26 H 0.377 0.623 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.595 -17.953 -8.313 19.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.176 4.176 3 Si 0.793 3.207 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.592 4.592 8 H 0.093 0.907 9 C 0.192 3.808 10 O -0.399 6.399 11 C -0.148 4.148 12 C -0.009 4.009 13 N -0.338 5.338 14 C 0.409 3.591 15 O -0.511 6.511 16 O -0.274 6.274 17 C -0.007 4.007 18 C 0.026 3.974 19 H 0.117 0.883 20 C -0.179 4.179 21 C -0.181 4.181 22 C -0.043 4.043 23 O -0.322 6.322 24 C 0.003 3.997 25 H 0.081 0.919 26 H 0.227 0.773 27 H 0.106 0.894 28 H 0.115 0.885 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.131 0.869 35 H 0.110 0.890 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.625 -18.266 -8.295 20.233 hybrid contribution -0.574 1.865 -0.173 1.959 sum -3.199 -16.401 -8.469 18.734 Atomic orbital electron populations 1.69753 1.07317 1.28642 1.49930 1.25875 0.95736 1.03009 0.92937 0.85386 0.78841 0.78439 0.78036 1.20239 1.21041 1.18747 1.21782 0.94483 0.90811 1.52154 0.90734 1.19935 0.86222 0.93422 0.81256 1.86091 1.51297 1.50442 1.52036 1.22655 0.97469 0.93717 1.00909 1.22129 0.88504 0.94966 0.95314 1.47556 1.29332 1.09401 1.47495 1.17802 0.80858 0.81339 0.79106 1.90907 1.42328 1.64080 1.53763 1.86290 1.54142 1.19807 1.67203 1.23758 0.88447 0.94548 0.93898 1.22966 1.01754 0.88228 0.84500 0.88344 1.23151 0.98113 0.97497 0.99185 1.23267 1.04330 0.97504 0.92970 1.23688 0.88134 0.93803 0.98705 1.88540 1.48507 1.64642 1.30557 1.23030 1.00599 0.76163 0.99924 0.91949 0.77316 0.89435 0.88463 0.91703 0.89273 0.92295 0.89298 0.89701 0.86899 0.88953 0.87526 0.88421 0.92416 0.92539 0.93397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.97 10.71 21.45 0.23 -49.74 16 2 C 0.03 1.32 5.26 84.65 0.45 1.76 16 3 Si 0.97 41.35 29.54 68.60 2.03 43.38 16 4 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.55 -28.61 8.26 25.60 0.21 -28.39 16 8 H 0.07 3.68 7.79 -2.91 -0.02 3.66 16 9 C 0.23 11.44 0.89 -10.07 -0.01 11.43 16 10 O -0.59 -31.32 13.20 -148.98 -1.97 -33.29 16 11 C -0.11 -4.31 6.12 31.78 0.19 -4.11 16 12 C 0.11 4.21 6.89 86.73 0.60 4.80 16 13 N -0.60 -26.88 3.32 -941.64 -3.13 -30.01 16 14 C 0.65 29.49 8.62 129.79 1.12 30.61 16 15 O -0.62 -31.30 16.39 19.80 0.32 -30.97 16 16 O -0.36 -13.60 9.81 -53.44 -0.52 -14.13 16 17 C 0.07 1.99 5.00 71.98 0.36 2.35 16 18 C 0.08 1.81 3.82 31.06 0.12 1.93 16 19 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 20 C -0.14 -1.86 6.54 31.85 0.21 -1.65 16 21 C -0.14 -1.55 7.16 32.05 0.23 -1.32 16 22 C 0.03 0.56 7.78 72.65 0.56 1.13 16 23 O -0.40 -10.59 11.01 -147.56 -1.62 -12.22 16 24 C 0.12 6.25 5.52 86.93 0.48 6.73 16 25 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 26 H 0.38 20.91 7.18 -74.06 -0.53 20.38 16 27 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 28 H 0.10 3.43 8.04 -2.39 -0.02 3.41 16 29 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.08 1.10 7.85 -2.38 -0.02 1.08 16 34 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 2.86 8.04 -2.39 -0.02 2.84 16 40 H 0.05 2.74 7.50 -2.38 -0.02 2.73 16 Total: -1.00 -67.82 331.41 0.36 -67.46 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: 0.51 Total: 34.26 kcal Atomic # 6 Polarization: 20.75 SS G_CDS: 4.52 Total: 25.27 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -2.90 Total: -79.75 kcal Atomic # 8 Polarization: -86.82 SS G_CDS: -3.79 Total: -90.61 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -67.82 0.36 -67.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828045635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.851 kcal (2) G-P(sol) polarization free energy of solvation -67.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds