Wall clock time and date at job start Tue Mar 31 2020 05:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00333 * 2 1 4 4 H 1.48497 * 109.47507 * 264.71851 * 3 2 1 5 5 H 1.48507 * 109.46977 * 24.71758 * 3 2 1 6 6 H 1.48503 * 109.47259 * 144.71430 * 3 2 1 7 7 C 1.37883 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00014 * 6.94820 * 7 2 1 9 9 C 1.50703 * 119.99619 * 186.95433 * 7 2 1 10 10 O 1.42899 * 110.91659 * 61.87664 * 9 7 2 11 11 C 1.55153 * 111.00463 * 297.97084 * 9 7 2 12 12 C 1.54325 * 102.94146 * 206.42731 * 11 9 7 13 13 N 1.47019 * 107.27210 * 22.19301 * 12 11 9 14 14 C 1.34777 * 125.65071 * 181.02584 * 13 12 11 15 15 O 1.21508 * 120.00286 * 180.02562 * 14 13 12 16 16 O 1.34638 * 119.99569 * 0.02562 * 14 13 12 17 17 C 1.45206 * 116.99738 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.46955 * 180.02562 * 17 16 14 19 19 H 1.08996 * 110.67450 * 56.50899 * 18 17 16 20 20 C 1.55224 * 110.64164 * 179.36531 * 18 17 16 21 21 C 1.54810 * 101.98690 * 155.43413 * 20 18 17 22 22 C 1.54104 * 104.30264 * 339.26451 * 21 20 18 23 23 O 1.43736 * 107.29728 * 357.89987 * 22 21 20 24 24 C 1.47424 * 108.70299 * 1.28822 * 13 12 11 25 25 H 0.96997 * 119.99879 * 359.97438 * 1 2 3 26 26 H 0.96696 * 114.00438 * 56.09601 * 10 9 7 27 27 H 1.08997 * 110.72034 * 88.06241 * 11 9 7 28 28 H 1.08996 * 110.71935 * 324.78912 * 11 9 7 29 29 H 1.09001 * 109.88397 * 262.77230 * 12 11 9 30 30 H 1.09004 * 109.88520 * 141.61149 * 12 11 9 31 31 H 1.08998 * 109.47275 * 60.00162 * 17 16 14 32 32 H 1.09003 * 109.47172 * 300.00036 * 17 16 14 33 33 H 1.09006 * 110.89236 * 37.30408 * 20 18 17 34 34 H 1.08991 * 111.02716 * 273.63106 * 20 18 17 35 35 H 1.08999 * 110.49161 * 220.52181 * 21 20 18 36 36 H 1.09001 * 110.49023 * 98.00420 * 21 20 18 37 37 H 1.08996 * 109.88046 * 117.33068 * 22 21 20 38 38 H 1.09008 * 109.87981 * 238.47613 * 22 21 20 39 39 H 1.08999 * 110.37094 * 94.48688 * 24 13 12 40 40 H 1.09000 * 110.36861 * 216.80856 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6084 1.9819 -1.3941 5 1 1.3953 2.6823 0.5855 6 1 3.4865 1.4748 0.8088 7 6 2.0045 -1.1941 -0.0005 8 1 1.4705 -2.1259 -0.1141 9 6 3.5032 -1.1990 0.1575 10 8 3.8851 -0.6444 1.4179 11 6 4.1883 -0.4447 -1.0126 12 6 5.5821 -1.1036 -1.0796 13 7 5.4706 -2.4262 -0.4472 14 6 6.4771 -3.3083 -0.2883 15 8 6.2689 -4.3771 0.2509 16 8 7.7134 -3.0052 -0.7270 17 6 8.7484 -4.0029 -0.5228 18 6 10.0748 -3.4836 -1.0814 19 1 10.3386 -2.5305 -0.6230 20 6 11.2056 -4.5242 -0.8627 21 6 12.2052 -4.1534 -1.9852 22 6 11.3579 -3.3688 -3.0056 23 8 10.0059 -3.3550 -2.5178 24 6 4.0740 -2.6303 -0.0214 25 1 -0.4850 0.8400 0.0004 26 1 3.4818 -1.0834 2.1792 27 1 4.2747 0.6184 -0.7880 28 1 3.6430 -0.6002 -1.9434 29 1 6.3067 -0.4943 -0.5394 30 1 5.8901 -1.2147 -2.1193 31 1 8.4725 -4.9233 -1.0374 32 1 8.8565 -4.2013 0.5436 33 1 10.8308 -5.5392 -0.9953 34 1 11.6622 -4.4049 0.1197 35 1 12.6164 -5.0534 -2.4425 36 1 13.0055 -3.5267 -1.5917 37 1 11.7316 -2.3485 -3.0911 38 1 11.3964 -3.8623 -3.9769 39 1 3.5185 -3.1697 -0.7886 40 1 4.0409 -3.1723 0.9237 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828045636.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:40 Heat of formation + Delta-G solvation = -161.034972 kcal Electronic energy + Delta-G solvation = -23153.660671 eV Core-core repulsion = 19548.147226 eV Total energy + Delta-G solvation = -3605.513445 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.30475 -39.55058 -38.17324 -35.96961 -34.56566 -32.52074 -32.45323 -31.26230 -30.24389 -28.37842 -26.28976 -25.04594 -22.70003 -21.99601 -21.53279 -20.40981 -19.73572 -17.86022 -17.39738 -17.13487 -16.70276 -16.18357 -15.89516 -15.39325 -15.02790 -14.67356 -14.30139 -14.06944 -13.66049 -13.49134 -12.93471 -12.91918 -12.70928 -12.17218 -12.16552 -12.03454 -11.71794 -11.69904 -11.57656 -11.32576 -11.08079 -11.06314 -10.62120 -10.51493 -10.36912 -10.20503 -10.00203 -9.93921 -9.06982 -8.81358 -8.58484 -8.14066 -6.25627 -4.37668 2.35957 3.17271 3.28065 3.39952 3.51153 3.56333 4.03368 4.17899 4.38421 4.50207 4.56770 4.79569 4.87389 4.96382 5.03868 5.16654 5.17501 5.26165 5.33626 5.38983 5.42164 5.50596 5.58824 5.65025 5.69103 5.73450 6.02198 6.05315 6.39610 6.43258 6.57259 6.61419 6.61712 6.71378 7.09375 7.42382 7.90381 8.15235 8.62145 8.71370 8.89335 9.37197 10.84665 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036206 B = 0.003568 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.169682 B = 7844.804105 C = 8232.992096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.091 3.909 3 Si 0.875 3.125 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.231 1.231 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.217 3.783 10 O -0.571 6.571 11 C -0.129 4.129 12 C 0.111 3.889 13 N -0.591 5.591 14 C 0.661 3.339 15 O -0.584 6.584 16 O -0.363 6.363 17 C 0.095 3.905 18 C 0.077 3.923 19 H 0.082 0.918 20 C -0.147 4.147 21 C -0.155 4.155 22 C 0.044 3.956 23 O -0.365 6.365 24 C 0.111 3.889 25 H 0.268 0.732 26 H 0.367 0.633 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.146 -5.150 -3.043 22.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.115 4.115 3 Si 0.703 3.297 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.155 1.155 7 C -0.591 4.591 8 H 0.099 0.901 9 C 0.177 3.823 10 O -0.377 6.377 11 C -0.167 4.167 12 C -0.012 4.012 13 N -0.331 5.331 14 C 0.416 3.584 15 O -0.475 6.475 16 O -0.277 6.277 17 C 0.019 3.981 18 C 0.020 3.980 19 H 0.100 0.900 20 C -0.184 4.184 21 C -0.193 4.193 22 C -0.033 4.033 23 O -0.284 6.284 24 C -0.009 4.009 25 H 0.078 0.922 26 H 0.215 0.785 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 22.216 -5.040 -3.394 23.032 hybrid contribution 0.237 0.405 0.338 0.579 sum 22.452 -4.635 -3.056 23.128 Atomic orbital electron populations 1.69930 1.06656 1.27736 1.47642 1.24931 0.94569 0.99620 0.92375 0.87065 0.81591 0.82198 0.78858 1.20740 1.22634 1.15466 1.21100 0.88490 0.95483 1.53983 0.90121 1.20144 0.93633 0.86464 0.82101 1.86448 1.73636 1.61617 1.16040 1.23036 0.93422 0.99911 1.00334 1.22042 0.99227 0.83037 0.96911 1.47281 1.08197 1.16859 1.60755 1.17549 0.80053 0.82696 0.78122 1.90950 1.83574 1.23896 1.49089 1.86275 1.17628 1.46803 1.76953 1.22894 0.83590 0.90475 1.01109 1.23262 0.93263 0.98743 0.82769 0.90004 1.23133 0.95408 1.00021 0.99880 1.22932 0.98681 1.01249 0.96394 1.23172 0.82463 0.99745 0.97942 1.89013 1.25202 1.94819 1.19325 1.23140 0.76889 1.00736 1.00177 0.92233 0.78543 0.90561 0.89084 0.91763 0.91845 0.90473 0.89796 0.89862 0.89493 0.90217 0.90455 0.92219 0.89746 0.90509 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.74 13.96 55.43 0.77 -24.96 16 2 C 0.09 2.47 5.47 -17.82 -0.10 2.38 16 3 Si 0.88 20.84 23.98 -169.99 -4.08 16.76 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.23 -5.42 5.44 56.52 0.31 -5.11 16 7 C -0.55 -14.46 8.83 -34.44 -0.30 -14.76 16 8 H 0.08 2.28 8.03 -52.49 -0.42 1.86 16 9 C 0.22 4.84 0.71 -89.50 -0.06 4.78 16 10 O -0.57 -12.57 10.83 -35.23 -0.38 -12.95 16 11 C -0.13 -2.64 4.64 -24.90 -0.12 -2.76 16 12 C 0.11 2.02 6.89 -3.07 -0.02 2.00 16 13 N -0.59 -11.72 3.32 -176.16 -0.59 -12.31 16 14 C 0.66 13.04 8.62 54.06 0.47 13.50 16 15 O -0.58 -12.63 16.39 -19.28 -0.32 -12.95 16 16 O -0.36 -6.20 9.82 -41.85 -0.41 -6.61 16 17 C 0.09 1.24 5.22 37.16 0.19 1.44 16 18 C 0.08 0.82 3.64 -25.55 -0.09 0.72 16 19 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 20 C -0.15 -1.06 6.61 -24.60 -0.16 -1.22 16 21 C -0.15 -0.96 7.01 -25.20 -0.18 -1.14 16 22 C 0.04 0.36 7.70 37.73 0.29 0.65 16 23 O -0.36 -4.55 11.22 -35.56 -0.40 -4.95 16 24 C 0.11 2.31 6.09 -2.41 -0.01 2.30 16 25 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.37 7.14 9.06 45.56 0.41 7.56 16 27 H 0.08 1.58 4.82 -51.93 -0.25 1.33 16 28 H 0.09 1.83 8.03 -51.93 -0.42 1.41 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 0.59 8.06 -51.93 -0.42 0.17 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 39 H 0.08 1.60 8.03 -51.93 -0.42 1.18 16 40 H 0.07 1.51 8.03 -51.93 -0.42 1.10 16 LS Contribution 324.38 15.07 4.89 4.89 Total: -1.00 -32.50 324.38 -5.99 -38.49 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.38 Total: 6.70 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -0.10 Total: 7.89 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.19 Total: -37.27 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -1.51 Total: -37.46 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.08 Total: 16.76 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.50 -5.99 -38.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828045636.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.542 kcal (2) G-P(sol) polarization free energy of solvation -32.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds