Wall clock time and date at job start Tue Mar 31 2020 05:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00333 * 2 1 4 4 H 1.48497 * 109.47507 * 264.71851 * 3 2 1 5 5 H 1.48507 * 109.46977 * 24.71758 * 3 2 1 6 6 H 1.48503 * 109.47259 * 144.71430 * 3 2 1 7 7 C 1.37883 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00014 * 6.94820 * 7 2 1 9 9 C 1.50703 * 119.99619 * 186.95433 * 7 2 1 10 10 O 1.42899 * 110.91659 * 61.87664 * 9 7 2 11 11 C 1.55153 * 111.00463 * 297.97084 * 9 7 2 12 12 C 1.54325 * 102.94146 * 206.42731 * 11 9 7 13 13 N 1.47019 * 107.27210 * 22.19301 * 12 11 9 14 14 C 1.34777 * 125.65071 * 181.02584 * 13 12 11 15 15 O 1.21508 * 120.00286 * 180.02562 * 14 13 12 16 16 O 1.34638 * 119.99569 * 0.02562 * 14 13 12 17 17 C 1.45206 * 116.99738 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.46955 * 180.02562 * 17 16 14 19 19 H 1.08996 * 110.67450 * 56.50899 * 18 17 16 20 20 C 1.55224 * 110.64164 * 179.36531 * 18 17 16 21 21 C 1.54810 * 101.98690 * 155.43413 * 20 18 17 22 22 C 1.54104 * 104.30264 * 339.26451 * 21 20 18 23 23 O 1.43736 * 107.29728 * 357.89987 * 22 21 20 24 24 C 1.47424 * 108.70299 * 1.28822 * 13 12 11 25 25 H 0.96997 * 119.99879 * 359.97438 * 1 2 3 26 26 H 0.96696 * 114.00438 * 56.09601 * 10 9 7 27 27 H 1.08997 * 110.72034 * 88.06241 * 11 9 7 28 28 H 1.08996 * 110.71935 * 324.78912 * 11 9 7 29 29 H 1.09001 * 109.88397 * 262.77230 * 12 11 9 30 30 H 1.09004 * 109.88520 * 141.61149 * 12 11 9 31 31 H 1.08998 * 109.47275 * 60.00162 * 17 16 14 32 32 H 1.09003 * 109.47172 * 300.00036 * 17 16 14 33 33 H 1.09006 * 110.89236 * 37.30408 * 20 18 17 34 34 H 1.08991 * 111.02716 * 273.63106 * 20 18 17 35 35 H 1.08999 * 110.49161 * 220.52181 * 21 20 18 36 36 H 1.09001 * 110.49023 * 98.00420 * 21 20 18 37 37 H 1.08996 * 109.88046 * 117.33068 * 22 21 20 38 38 H 1.09008 * 109.87981 * 238.47613 * 22 21 20 39 39 H 1.08999 * 110.37094 * 94.48688 * 24 13 12 40 40 H 1.09000 * 110.36861 * 216.80856 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6084 1.9819 -1.3941 5 1 1.3953 2.6823 0.5855 6 1 3.4865 1.4748 0.8088 7 6 2.0045 -1.1941 -0.0005 8 1 1.4705 -2.1259 -0.1141 9 6 3.5032 -1.1990 0.1575 10 8 3.8851 -0.6444 1.4179 11 6 4.1883 -0.4447 -1.0126 12 6 5.5821 -1.1036 -1.0796 13 7 5.4706 -2.4262 -0.4472 14 6 6.4771 -3.3083 -0.2883 15 8 6.2689 -4.3771 0.2509 16 8 7.7134 -3.0052 -0.7270 17 6 8.7484 -4.0029 -0.5228 18 6 10.0748 -3.4836 -1.0814 19 1 10.3386 -2.5305 -0.6230 20 6 11.2056 -4.5242 -0.8627 21 6 12.2052 -4.1534 -1.9852 22 6 11.3579 -3.3688 -3.0056 23 8 10.0059 -3.3550 -2.5178 24 6 4.0740 -2.6303 -0.0214 25 1 -0.4850 0.8400 0.0004 26 1 3.4818 -1.0834 2.1792 27 1 4.2747 0.6184 -0.7880 28 1 3.6430 -0.6002 -1.9434 29 1 6.3067 -0.4943 -0.5394 30 1 5.8901 -1.2147 -2.1193 31 1 8.4725 -4.9233 -1.0374 32 1 8.8565 -4.2013 0.5436 33 1 10.8308 -5.5392 -0.9953 34 1 11.6622 -4.4049 0.1197 35 1 12.6164 -5.0534 -2.4425 36 1 13.0055 -3.5267 -1.5917 37 1 11.7316 -2.3485 -3.0911 38 1 11.3964 -3.8623 -3.9769 39 1 3.5185 -3.1697 -0.7886 40 1 4.0409 -3.1723 0.9237 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828045636.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:39 Heat of formation + Delta-G solvation = -186.370871 kcal Electronic energy + Delta-G solvation = -23154.759318 eV Core-core repulsion = 19548.147226 eV Total energy + Delta-G solvation = -3606.612092 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.71298 -40.44456 -39.70655 -37.42372 -36.25861 -34.50865 -33.21628 -32.38721 -31.60593 -30.05251 -27.62614 -26.44474 -24.26378 -22.76529 -22.27855 -21.90420 -21.40175 -19.59262 -18.97096 -18.26023 -17.98967 -17.31341 -16.91423 -16.81649 -16.45903 -16.30300 -15.68147 -15.21791 -15.10606 -14.77314 -14.49177 -14.29802 -14.11192 -13.82011 -13.30207 -13.12330 -13.09424 -12.83430 -12.71114 -12.49445 -12.39278 -12.34900 -12.22386 -11.86963 -11.74286 -11.67009 -11.58580 -11.00966 -10.77342 -10.68411 -10.44867 -9.74019 -8.36492 -6.51815 0.97784 1.39778 1.47811 1.64483 1.67254 2.39888 2.77965 2.81403 2.99039 3.49732 3.55767 3.69371 3.82058 3.93181 3.98250 4.01596 4.13402 4.17231 4.30996 4.37305 4.39304 4.42831 4.58174 4.73981 4.77523 4.86416 4.89346 4.92764 5.00818 5.03624 5.07501 5.18071 5.21910 5.37615 5.48807 5.91003 6.06253 6.37806 6.59570 7.09789 7.13872 7.28759 8.77390 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036206 B = 0.003568 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.169682 B = 7844.804105 C = 8232.992096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.042 3.958 3 Si 0.935 3.065 4 H -0.265 1.265 5 H -0.307 1.307 6 H -0.221 1.221 7 C -0.551 4.551 8 H 0.045 0.955 9 C 0.217 3.783 10 O -0.573 6.573 11 C -0.130 4.130 12 C 0.117 3.883 13 N -0.596 5.596 14 C 0.662 3.338 15 O -0.609 6.609 16 O -0.363 6.363 17 C 0.086 3.914 18 C 0.076 3.924 19 H 0.087 0.913 20 C -0.141 4.141 21 C -0.148 4.148 22 C 0.034 3.966 23 O -0.401 6.401 24 C 0.118 3.882 25 H 0.269 0.731 26 H 0.377 0.623 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.317 -4.526 -3.266 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.160 4.160 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.235 1.235 6 H -0.144 1.144 7 C -0.589 4.589 8 H 0.063 0.937 9 C 0.176 3.824 10 O -0.380 6.380 11 C -0.168 4.168 12 C -0.005 4.005 13 N -0.335 5.335 14 C 0.417 3.583 15 O -0.502 6.502 16 O -0.277 6.277 17 C 0.012 3.988 18 C 0.019 3.981 19 H 0.105 0.895 20 C -0.179 4.179 21 C -0.185 4.185 22 C -0.042 4.042 23 O -0.321 6.321 24 C -0.003 4.003 25 H 0.078 0.922 26 H 0.226 0.774 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 25.431 -4.424 -3.630 26.067 hybrid contribution -0.739 0.102 0.408 0.850 sum 24.692 -4.322 -3.221 25.274 Atomic orbital electron populations 1.70052 1.08430 1.28614 1.49888 1.25703 0.95086 1.03032 0.92134 0.86137 0.80336 0.77794 0.79712 1.19009 1.23521 1.14390 1.21282 0.90742 0.94003 1.52842 0.93692 1.19992 0.91444 0.87978 0.82936 1.86405 1.73529 1.61877 1.16229 1.23004 0.94547 0.99972 0.99250 1.22076 0.97998 0.82112 0.98341 1.47244 1.07788 1.17573 1.60933 1.17599 0.80751 0.82182 0.77743 1.90928 1.84166 1.24916 1.50176 1.86291 1.16988 1.47981 1.76412 1.23286 0.83596 0.89766 1.02163 1.23373 0.92505 1.00044 0.82185 0.89472 1.23165 0.94351 0.98897 1.01460 1.22938 0.98383 1.01838 0.95367 1.23399 0.81228 1.00740 0.98843 1.88967 1.27776 1.95079 1.20285 1.22879 0.77831 0.99704 0.99909 0.92170 0.77424 0.90248 0.89026 0.90500 0.89639 0.91183 0.88604 0.89886 0.87386 0.88865 0.88747 0.91579 0.89127 0.91138 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.38 13.96 21.45 0.30 -55.08 16 2 C 0.04 2.27 5.47 84.66 0.46 2.74 16 3 Si 0.93 42.42 23.98 68.60 1.65 44.06 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.31 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.22 -9.60 5.44 99.48 0.54 -9.06 16 7 C -0.55 -29.16 8.83 25.60 0.23 -28.93 16 8 H 0.04 2.64 8.03 -2.91 -0.02 2.62 16 9 C 0.22 9.50 0.71 -10.07 -0.01 9.49 16 10 O -0.57 -24.27 10.83 -148.98 -1.61 -25.88 16 11 C -0.13 -5.04 4.64 31.78 0.15 -4.89 16 12 C 0.12 3.96 6.89 86.73 0.60 4.55 16 13 N -0.60 -22.76 3.32 -941.65 -3.13 -25.89 16 14 C 0.66 25.34 8.62 129.79 1.12 26.45 16 15 O -0.61 -26.00 16.39 19.82 0.32 -25.67 16 16 O -0.36 -11.87 9.82 -54.00 -0.53 -12.40 16 17 C 0.09 2.15 5.22 71.98 0.38 2.52 16 18 C 0.08 1.47 3.64 31.36 0.11 1.58 16 19 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 20 C -0.14 -1.65 6.61 31.98 0.21 -1.43 16 21 C -0.15 -1.38 7.01 31.59 0.22 -1.16 16 22 C 0.03 0.50 7.70 72.36 0.56 1.06 16 23 O -0.40 -9.43 11.22 -148.66 -1.67 -11.10 16 24 C 0.12 4.88 6.09 86.93 0.53 5.41 16 25 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 26 H 0.38 14.27 9.06 -74.06 -0.67 13.60 16 27 H 0.08 3.04 4.82 -2.39 -0.01 3.03 16 28 H 0.09 3.52 8.03 -2.39 -0.02 3.50 16 29 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.08 0.98 8.06 -2.38 -0.02 0.96 16 34 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.07 2.97 8.03 -2.39 -0.02 2.95 16 40 H 0.07 2.87 8.03 -2.39 -0.02 2.85 16 Total: -1.00 -69.68 324.38 0.09 -69.59 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.21 Total: 24.98 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 4.55 Total: 17.39 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -2.83 Total: -80.97 kcal Atomic # 8 Polarization: -71.57 SS G_CDS: -3.49 Total: -75.05 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.65 Total: 44.06 kcal Total: -69.68 0.09 -69.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828045636.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.777 kcal (2) G-P(sol) polarization free energy of solvation -69.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds