Wall clock time and date at job start Tue Mar 31 2020 05:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00020 * 2 1 4 4 H 1.48505 * 109.47341 * 264.90725 * 3 2 1 5 5 H 1.48492 * 109.47143 * 24.90700 * 3 2 1 6 6 H 1.48495 * 109.47050 * 144.90776 * 3 2 1 7 7 C 1.37878 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99534 * 185.89435 * 7 2 1 9 9 C 1.50701 * 120.00022 * 5.89376 * 7 2 1 10 10 O 1.42892 * 110.64025 * 59.65738 * 9 7 2 11 11 C 1.55159 * 110.71806 * 182.79674 * 9 7 2 12 12 C 1.54905 * 101.57852 * 153.86537 * 11 9 7 13 13 N 1.47427 * 104.83430 * 322.98898 * 12 11 9 14 14 C 1.34780 * 125.64940 * 204.09336 * 13 12 11 15 15 O 1.21505 * 119.99595 * 180.02562 * 14 13 12 16 16 O 1.34631 * 119.99812 * 0.02562 * 14 13 12 17 17 C 1.45204 * 116.99800 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47232 * 180.02562 * 17 16 14 19 19 H 1.09000 * 109.87396 * 53.99623 * 18 17 16 20 20 C 1.54098 * 109.88083 * 174.99985 * 18 17 16 21 21 C 1.54818 * 104.18861 * 121.45492 * 20 18 17 22 22 C 1.54990 * 102.09084 * 20.87976 * 21 20 18 23 23 O 1.43749 * 109.87851 * 292.83239 * 18 17 16 24 24 C 1.47022 * 108.70057 * 24.35973 * 13 12 11 25 25 H 0.97005 * 119.99639 * 359.97438 * 1 2 3 26 26 H 0.96703 * 114.00009 * 297.54836 * 10 9 7 27 27 H 1.09001 * 111.00213 * 35.79386 * 11 9 7 28 28 H 1.09001 * 111.03685 * 271.95598 * 11 9 7 29 29 H 1.09006 * 110.36608 * 204.15143 * 12 11 9 30 30 H 1.08997 * 110.46280 * 81.88187 * 12 11 9 31 31 H 1.08994 * 109.47071 * 300.00039 * 17 16 14 32 32 H 1.08997 * 109.46999 * 60.00474 * 17 16 14 33 33 H 1.08996 * 110.49284 * 240.12715 * 20 18 17 34 34 H 1.08995 * 110.48781 * 2.77878 * 20 18 17 35 35 H 1.08993 * 110.91065 * 139.08112 * 21 20 18 36 36 H 1.08999 * 110.90651 * 262.65120 * 21 20 18 37 37 H 1.09005 * 110.61852 * 81.47951 * 22 21 20 38 38 H 1.09002 * 110.61965 * 204.47476 * 22 21 20 39 39 H 1.08999 * 109.88183 * 118.13158 * 24 13 12 40 40 H 1.08999 * 109.87843 * 239.29197 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6043 1.9843 -1.3946 5 1 1.3969 2.6813 0.5896 6 1 3.4887 1.4736 0.8049 7 6 2.0045 -1.1941 -0.0005 8 1 3.0802 -1.1965 0.0955 9 6 1.2569 -2.4957 -0.1351 10 8 0.5262 -2.5323 -1.3626 11 6 2.2303 -3.7002 -0.0396 12 6 1.2920 -4.8177 0.4801 13 7 0.3826 -4.1395 1.4217 14 6 -0.2806 -4.7293 2.4360 15 8 -1.0073 -4.0692 3.1518 16 8 -0.1379 -6.0499 2.6559 17 6 -0.8827 -6.6177 3.7655 18 6 -0.5952 -8.1175 3.8584 19 1 0.4804 -8.2859 3.9124 20 6 -1.2809 -8.7061 5.1065 21 6 -2.2167 -9.8034 4.5434 22 6 -1.5821 -10.0923 3.1592 23 8 -1.1416 -8.7918 2.7125 24 6 0.3140 -2.7144 1.0669 25 1 -0.4850 0.8401 0.0004 26 1 -0.1561 -1.8508 -1.4346 27 1 3.0310 -3.4998 0.6723 28 1 2.6356 -3.9543 -1.0190 29 1 1.8673 -5.5867 0.9958 30 1 0.7280 -5.2554 -0.3435 31 1 -0.5797 -6.1318 4.6929 32 1 -1.9494 -6.4612 3.6049 33 1 -0.5416 -9.1430 5.7778 34 1 -1.8592 -7.9391 5.6216 35 1 -2.1969 -10.6925 5.1735 36 1 -3.2344 -9.4285 4.4347 37 1 -0.7350 -10.7710 3.2593 38 1 -2.3246 -10.5021 2.4745 39 1 -0.7071 -2.4494 0.7926 40 1 0.6433 -2.1064 1.9095 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828045637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:41 Heat of formation + Delta-G solvation = -196.822583 kcal Electronic energy + Delta-G solvation = -23151.732803 eV Core-core repulsion = 19544.667490 eV Total energy + Delta-G solvation = -3607.065312 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.66848 -40.44407 -39.56368 -37.37581 -36.19355 -34.24452 -33.25797 -32.22960 -31.47111 -29.66023 -27.49233 -26.36872 -24.41006 -23.05166 -22.08762 -21.71416 -21.33372 -19.22413 -18.96919 -18.24489 -17.97627 -17.14979 -17.08110 -16.69945 -16.45542 -16.21933 -15.45714 -15.07362 -14.81489 -14.64969 -14.54312 -14.26358 -13.88823 -13.52974 -13.41002 -13.10308 -12.83911 -12.64462 -12.60581 -12.51599 -12.35465 -12.27747 -12.21308 -12.11421 -11.76729 -11.69496 -11.56979 -11.18829 -10.72454 -10.67845 -10.33825 -9.74879 -8.26645 -6.42427 1.03168 1.44285 1.45779 1.54711 1.67008 2.38724 2.82440 2.90002 2.99492 3.53300 3.75848 3.77191 3.89946 4.02764 4.03732 4.11144 4.13946 4.30111 4.35277 4.40311 4.51283 4.60882 4.66688 4.79366 4.85936 4.92954 4.97765 5.02048 5.08086 5.15389 5.17715 5.20494 5.33767 5.46385 5.72765 5.92657 6.03906 6.46929 6.64949 7.16191 7.25681 7.32710 8.79604 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.038570 B = 0.003418 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.775370 B = 8190.261486 C = 8489.194532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.557 4.557 8 H 0.071 0.929 9 C 0.234 3.766 10 O -0.585 6.585 11 C -0.109 4.109 12 C 0.111 3.889 13 N -0.601 5.601 14 C 0.655 3.345 15 O -0.616 6.616 16 O -0.361 6.361 17 C 0.080 3.920 18 C 0.080 3.920 19 H 0.087 0.913 20 C -0.144 4.144 21 C -0.150 4.150 22 C 0.034 3.966 23 O -0.401 6.401 24 C 0.139 3.861 25 H 0.271 0.729 26 H 0.375 0.625 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.037 0.963 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.354 -18.874 8.439 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.175 4.175 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.595 4.595 8 H 0.089 0.911 9 C 0.194 3.806 10 O -0.392 6.392 11 C -0.147 4.147 12 C -0.010 4.010 13 N -0.341 5.341 14 C 0.410 3.590 15 O -0.509 6.509 16 O -0.275 6.275 17 C 0.005 3.995 18 C 0.022 3.978 19 H 0.105 0.895 20 C -0.181 4.181 21 C -0.187 4.187 22 C -0.042 4.042 23 O -0.321 6.321 24 C 0.018 3.982 25 H 0.080 0.920 26 H 0.224 0.776 27 H 0.106 0.894 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.127 0.873 34 H 0.104 0.896 35 H 0.127 0.873 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.118 0.882 39 H 0.055 0.945 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.397 -19.094 8.430 20.876 hybrid contribution -0.527 1.781 0.321 1.884 sum -0.925 -17.313 8.751 19.421 Atomic orbital electron populations 1.69854 1.07152 1.28594 1.49795 1.25840 0.95802 1.02915 0.92971 0.85440 0.78525 0.78382 0.78513 1.19747 1.21202 1.19156 1.21794 0.94466 0.91137 1.52070 0.91092 1.19727 0.87383 0.93744 0.79738 1.86125 1.54095 1.58677 1.40321 1.22763 0.96725 0.92872 1.02320 1.22437 0.91073 0.95693 0.91840 1.47625 1.46321 1.11052 1.29104 1.17757 0.79370 0.81146 0.80693 1.90913 1.43759 1.65490 1.50738 1.86278 1.67365 1.21116 1.52705 1.23520 0.95745 0.93079 0.87152 1.22922 0.99506 0.88232 0.87125 0.89469 1.22968 1.00009 0.99163 0.96005 1.23157 0.99389 0.99725 0.96473 1.23846 0.99247 0.84869 0.96196 1.88990 1.80883 1.29693 1.32520 1.22692 1.00117 0.76172 0.99251 0.92011 0.77594 0.89377 0.88651 0.88493 0.91297 0.89062 0.91841 0.87349 0.89601 0.87310 0.90724 0.90524 0.88216 0.94468 0.93952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.78 11.03 21.45 0.24 -49.55 16 2 C 0.03 1.35 5.28 84.66 0.45 1.80 16 3 Si 0.97 41.82 29.54 68.60 2.03 43.85 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.56 -29.08 8.11 25.60 0.21 -28.87 16 8 H 0.07 3.58 7.78 -2.91 -0.02 3.56 16 9 C 0.23 11.48 0.85 -10.35 -0.01 11.47 16 10 O -0.58 -29.71 13.07 -148.98 -1.95 -31.66 16 11 C -0.11 -4.28 6.23 31.99 0.20 -4.08 16 12 C 0.11 4.11 6.91 86.85 0.60 4.71 16 13 N -0.60 -26.82 3.33 -942.10 -3.13 -29.95 16 14 C 0.66 29.07 8.62 129.79 1.12 30.19 16 15 O -0.62 -30.86 16.46 19.82 0.33 -30.53 16 16 O -0.36 -13.26 9.75 -53.66 -0.52 -13.78 16 17 C 0.08 2.27 4.92 71.98 0.35 2.63 16 18 C 0.08 1.70 3.72 30.96 0.12 1.82 16 19 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 20 C -0.14 -1.90 6.64 31.59 0.21 -1.69 16 21 C -0.15 -1.72 7.15 31.90 0.23 -1.49 16 22 C 0.03 0.52 7.72 72.66 0.56 1.09 16 23 O -0.40 -10.15 11.18 -148.26 -1.66 -11.81 16 24 C 0.14 7.10 5.23 86.73 0.45 7.55 16 25 H 0.27 14.10 8.31 -92.70 -0.77 13.33 16 26 H 0.38 19.72 7.51 -74.06 -0.56 19.16 16 27 H 0.09 3.26 8.03 -2.39 -0.02 3.25 16 28 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 29 H 0.10 3.01 8.04 -2.38 -0.02 2.99 16 30 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 1.11 7.70 -2.39 -0.02 1.09 16 35 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.04 2.08 7.92 -2.39 -0.02 2.06 16 40 H 0.04 2.35 7.81 -2.39 -0.02 2.33 16 Total: -1.00 -67.20 331.56 0.30 -66.90 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: 0.48 Total: 31.40 kcal Atomic # 6 Polarization: 20.65 SS G_CDS: 4.49 Total: 25.13 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -2.90 Total: -79.50 kcal Atomic # 8 Polarization: -83.98 SS G_CDS: -3.80 Total: -87.78 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -67.20 0.30 -66.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828045637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.924 kcal (2) G-P(sol) polarization free energy of solvation -67.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds