Wall clock time and date at job start Tue Mar 31 2020 05:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.41650 * 2 1 4 4 C 1.54473 * 110.37321 * 237.69136 * 2 1 3 5 5 C 1.54680 * 104.07819 * 217.10369 * 4 2 1 6 6 C 1.54480 * 103.98060 * 0.13291 * 5 4 2 7 7 H 1.09005 * 110.37132 * 264.96786 * 6 5 4 8 8 C 1.53005 * 110.37289 * 142.74135 * 6 5 4 9 9 C 1.53001 * 109.47110 * 176.55003 * 8 6 5 10 10 C 1.50695 * 109.47045 * 179.97438 * 9 8 6 11 11 O 1.21284 * 120.00286 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99904 * 179.97438 * 10 9 8 13 13 C 1.37098 * 120.00237 * 179.97438 * 12 10 9 14 14 H 1.07998 * 119.99712 * 16.51106 * 13 12 10 15 15 C 1.38946 * 119.99903 * 196.50806 * 13 12 10 16 16 N 1.31408 * 120.00304 * 21.65692 * 15 13 12 17 17 Si 1.86803 * 119.99603 * 201.65061 * 15 13 12 18 18 H 1.48496 * 109.47408 * 0.02562 * 17 15 13 19 19 H 1.48510 * 109.46745 * 120.00360 * 17 15 13 20 20 H 1.48503 * 109.47425 * 240.00136 * 17 15 13 21 21 C 1.46505 * 119.99930 * 0.02562 * 12 10 9 22 22 C 1.50700 * 109.46990 * 84.06567 * 21 12 10 23 23 O 1.20828 * 120.00108 * 0.02562 * 22 21 12 24 24 O 1.34232 * 119.99865 * 179.97438 * 22 21 12 25 25 O 1.44425 * 110.36611 * 122.30826 * 2 1 3 26 26 H 1.09000 * 109.47600 * 299.14576 * 1 2 3 27 27 H 1.09001 * 109.47049 * 59.14463 * 1 2 3 28 28 H 1.09000 * 109.47155 * 179.14319 * 1 2 3 29 29 H 1.09005 * 110.51445 * 335.83473 * 4 2 1 30 30 H 1.08993 * 110.51353 * 98.54420 * 4 2 1 31 31 H 1.09009 * 110.61111 * 241.48606 * 5 4 2 32 32 H 1.09005 * 110.49637 * 118.72295 * 5 4 2 33 33 H 1.09001 * 109.47073 * 56.54878 * 8 6 5 34 34 H 1.08992 * 109.47021 * 296.55005 * 8 6 5 35 35 H 1.09003 * 109.46777 * 59.99770 * 9 8 6 36 36 H 1.09004 * 109.46812 * 300.00506 * 9 8 6 37 37 H 0.97003 * 119.99613 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.46858 * 324.06694 * 21 12 10 39 39 H 1.08999 * 109.47111 * 204.06468 * 21 12 10 40 40 H 0.96699 * 116.99759 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0678 -0.7740 -1.2239 5 6 3.3205 -1.5048 -0.6862 6 6 3.3872 -1.0872 0.7996 7 1 4.0528 -0.2329 0.9241 8 6 3.8600 -2.2595 1.6617 9 6 4.0010 -1.8000 3.1143 10 6 4.4660 -2.9548 3.9635 11 8 4.6655 -4.0385 3.4568 12 7 4.6613 -2.7830 5.2859 13 6 5.0838 -3.8337 6.0587 14 1 5.5127 -4.7085 5.5927 15 6 4.9603 -3.7730 7.4413 16 7 4.0895 -2.9547 7.9879 17 14 6.0322 -4.8549 8.5231 18 1 6.9241 -5.6798 7.6692 19 1 6.8547 -4.0006 9.4171 20 1 5.1703 -5.7437 9.3431 21 6 4.4209 -1.4738 5.8979 22 6 2.9560 -1.3323 6.2221 23 8 2.1913 -2.2328 5.9684 24 8 2.5008 -0.2062 6.7936 25 8 2.0326 -0.7237 1.1444 26 1 -0.3634 0.5005 0.8975 27 1 -0.3633 0.5271 -0.8822 28 1 -0.3633 -1.0275 -0.0154 29 1 1.3276 -1.4919 -1.5773 30 1 2.3429 -0.0839 -2.0214 31 1 4.2142 -1.1750 -1.2161 32 1 3.1997 -2.5846 -0.7743 33 1 4.8245 -2.6129 1.2971 34 1 3.1318 -3.0685 1.6056 35 1 3.0365 -1.4466 3.4788 36 1 4.7292 -0.9908 3.1703 37 1 4.0031 -2.9126 8.9532 38 1 4.7168 -0.6880 5.2029 39 1 5.0056 -1.3880 6.8138 40 1 1.5535 -0.1616 6.9824 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828221272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:39 Heat of formation + Delta-G solvation = -174.534198 kcal Electronic energy + Delta-G solvation = -23560.351572 eV Core-core repulsion = 19954.252756 eV Total energy + Delta-G solvation = -3606.098816 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.66544 -39.27885 -38.06495 -35.25031 -34.50566 -33.47313 -32.18250 -31.73978 -30.37643 -27.66396 -26.57097 -24.59091 -22.68072 -21.28547 -21.00868 -20.67632 -18.68624 -17.12317 -16.85397 -16.49016 -16.20082 -15.94478 -15.56748 -14.91427 -14.41806 -14.35613 -14.11630 -13.99555 -13.78752 -13.11773 -12.81666 -12.48447 -12.31036 -12.16232 -11.80312 -11.66357 -11.56531 -11.53373 -11.19704 -10.96170 -10.95659 -10.65272 -10.63827 -10.46702 -10.38515 -10.26513 -10.20143 -9.62495 -9.58077 -9.00356 -8.44427 -7.86669 -6.41172 -3.84754 3.15069 3.26588 3.34104 3.51958 3.70850 3.88270 4.11524 4.30065 4.56671 4.61032 4.78550 4.88884 5.02126 5.12929 5.18265 5.31917 5.42622 5.46372 5.52843 5.64749 5.71667 5.83041 5.84312 5.91108 5.98172 5.99817 6.07861 6.13982 6.22913 6.48181 6.58984 6.63237 6.68160 7.04530 7.54502 7.59090 8.03892 8.41460 9.08946 9.13753 9.36132 9.90405 10.67980 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.024566 B = 0.004519 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.506586 B = 6195.081891 C = 7023.321942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.067 3.933 3 H 0.065 0.935 4 C -0.151 4.151 5 C -0.151 4.151 6 C 0.074 3.926 7 H 0.067 0.933 8 C -0.091 4.091 9 C -0.133 4.133 10 C 0.463 3.537 11 O -0.578 6.578 12 N -0.436 5.436 13 C -0.304 4.304 14 H 0.107 0.893 15 C 0.027 3.973 16 N -0.883 5.883 17 Si 0.927 3.073 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.283 1.283 21 C 0.147 3.853 22 C 0.489 3.511 23 O -0.502 6.502 24 O -0.535 6.535 25 O -0.363 6.363 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.269 0.731 38 H 0.077 0.923 39 H 0.127 0.873 40 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.308 10.574 -11.728 15.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.009 3.991 3 H 0.083 0.917 4 C -0.189 4.189 5 C -0.189 4.189 6 C 0.017 3.983 7 H 0.085 0.915 8 C -0.128 4.128 9 C -0.173 4.173 10 C 0.252 3.748 11 O -0.462 6.462 12 N -0.155 5.155 13 C -0.431 4.431 14 H 0.125 0.875 15 C -0.175 4.175 16 N -0.523 5.523 17 Si 0.754 3.246 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.209 1.209 21 C 0.020 3.980 22 C 0.329 3.671 23 O -0.387 6.387 24 O -0.346 6.346 25 O -0.282 6.282 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.145 0.855 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -2.152 9.717 -11.745 15.394 hybrid contribution -0.314 -0.292 0.857 0.958 sum -2.466 9.424 -10.888 14.610 Atomic orbital electron populations 1.21794 0.93491 1.02915 1.02158 1.22934 0.95212 0.95340 0.85586 0.91725 1.23028 0.97941 0.99685 0.98204 1.23019 0.98026 1.01841 0.96003 1.23102 0.84485 0.97333 0.93405 0.91538 1.21335 1.02235 0.96158 0.93119 1.21565 1.02267 0.97939 0.95514 1.20127 0.81977 0.89533 0.83163 1.90506 1.55363 1.27653 1.72647 1.43485 1.57777 1.08474 1.05807 1.19753 1.36693 0.98858 0.87801 0.87487 1.25221 0.96429 0.98333 0.97490 1.69822 1.30892 1.39625 1.11954 0.85848 0.79771 0.79502 0.79471 1.19192 1.20598 1.20937 1.20656 0.89767 0.86467 1.01079 1.23843 0.92376 0.78191 0.72702 1.90619 1.58104 1.39552 1.50435 1.84519 1.31462 1.42838 1.75819 1.89235 1.27190 1.74207 1.37603 0.91838 0.91520 0.91780 0.90711 0.90956 0.90684 0.90321 0.90102 0.90528 0.89826 0.90699 0.92031 0.90502 0.85518 0.75228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.52 37.16 0.35 -1.11 16 2 C 0.07 0.77 3.92 -25.96 -0.10 0.66 16 3 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.15 -1.49 6.64 -25.07 -0.17 -1.65 16 5 C -0.15 -1.69 6.65 -25.07 -0.17 -1.85 16 6 C 0.07 1.03 3.26 -25.95 -0.08 0.94 16 7 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 8 C -0.09 -1.55 4.14 -26.73 -0.11 -1.66 16 9 C -0.13 -2.56 4.24 -27.88 -0.12 -2.68 16 10 C 0.46 11.53 7.41 -10.99 -0.08 11.45 16 11 O -0.58 -16.22 15.62 5.55 0.09 -16.13 16 12 N -0.44 -11.22 2.18 -116.10 -0.25 -11.48 16 13 C -0.30 -8.51 9.34 -14.93 -0.14 -8.65 16 14 H 0.11 3.14 7.37 -52.49 -0.39 2.76 16 15 C 0.03 0.73 4.87 -17.47 -0.09 0.64 16 16 N -0.88 -23.62 9.28 55.50 0.51 -23.10 16 17 Si 0.93 20.76 29.60 -169.99 -5.03 15.73 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C 0.15 3.27 4.97 -5.19 -0.03 3.24 16 22 C 0.49 11.19 5.86 36.01 0.21 11.40 16 23 O -0.50 -13.55 16.79 -18.75 -0.31 -13.87 16 24 O -0.54 -9.96 13.42 -39.26 -0.53 -10.49 16 25 O -0.36 -5.59 10.75 -35.23 -0.38 -5.97 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 29 H 0.07 0.71 7.86 -51.93 -0.41 0.31 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.08 0.92 7.87 -51.93 -0.41 0.51 16 33 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 34 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 35 H 0.08 1.71 7.33 -51.93 -0.38 1.33 16 36 H 0.07 1.22 7.42 -51.93 -0.39 0.84 16 37 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.08 1.39 6.69 -51.93 -0.35 1.04 16 39 H 0.13 2.91 6.37 -51.93 -0.33 2.58 16 40 H 0.39 5.68 9.10 45.56 0.41 6.10 16 LS Contribution 331.27 15.07 4.99 4.99 Total: -1.00 -34.66 331.27 -6.59 -41.25 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -5.17 Total: 8.32 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -0.51 Total: 10.73 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.26 Total: -34.58 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -1.13 Total: -46.45 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.66 -6.59 -41.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828221272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.284 kcal (2) G-P(sol) polarization free energy of solvation -34.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds