Wall clock time and date at job start Tue Mar 31 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.41650 * 2 1 4 4 C 1.54473 * 110.37321 * 237.69136 * 2 1 3 5 5 C 1.54680 * 104.07819 * 217.10369 * 4 2 1 6 6 C 1.54480 * 103.98060 * 0.13291 * 5 4 2 7 7 H 1.09005 * 110.37132 * 264.96786 * 6 5 4 8 8 C 1.53005 * 110.37289 * 142.74135 * 6 5 4 9 9 C 1.53001 * 109.47110 * 176.55003 * 8 6 5 10 10 C 1.50695 * 109.47045 * 179.97438 * 9 8 6 11 11 O 1.21284 * 120.00286 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99904 * 179.97438 * 10 9 8 13 13 C 1.37098 * 120.00237 * 179.97438 * 12 10 9 14 14 H 1.07998 * 119.99712 * 16.51106 * 13 12 10 15 15 C 1.38946 * 119.99903 * 196.50806 * 13 12 10 16 16 N 1.31408 * 120.00304 * 21.65692 * 15 13 12 17 17 Si 1.86803 * 119.99603 * 201.65061 * 15 13 12 18 18 H 1.48496 * 109.47408 * 0.02562 * 17 15 13 19 19 H 1.48510 * 109.46745 * 120.00360 * 17 15 13 20 20 H 1.48503 * 109.47425 * 240.00136 * 17 15 13 21 21 C 1.46505 * 119.99930 * 0.02562 * 12 10 9 22 22 C 1.50700 * 109.46990 * 84.06567 * 21 12 10 23 23 O 1.20828 * 120.00108 * 0.02562 * 22 21 12 24 24 O 1.34232 * 119.99865 * 179.97438 * 22 21 12 25 25 O 1.44425 * 110.36611 * 122.30826 * 2 1 3 26 26 H 1.09000 * 109.47600 * 299.14576 * 1 2 3 27 27 H 1.09001 * 109.47049 * 59.14463 * 1 2 3 28 28 H 1.09000 * 109.47155 * 179.14319 * 1 2 3 29 29 H 1.09005 * 110.51445 * 335.83473 * 4 2 1 30 30 H 1.08993 * 110.51353 * 98.54420 * 4 2 1 31 31 H 1.09009 * 110.61111 * 241.48606 * 5 4 2 32 32 H 1.09005 * 110.49637 * 118.72295 * 5 4 2 33 33 H 1.09001 * 109.47073 * 56.54878 * 8 6 5 34 34 H 1.08992 * 109.47021 * 296.55005 * 8 6 5 35 35 H 1.09003 * 109.46777 * 59.99770 * 9 8 6 36 36 H 1.09004 * 109.46812 * 300.00506 * 9 8 6 37 37 H 0.97003 * 119.99613 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.46858 * 324.06694 * 21 12 10 39 39 H 1.08999 * 109.47111 * 204.06468 * 21 12 10 40 40 H 0.96699 * 116.99759 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0678 -0.7740 -1.2239 5 6 3.3205 -1.5048 -0.6862 6 6 3.3872 -1.0872 0.7996 7 1 4.0528 -0.2329 0.9241 8 6 3.8600 -2.2595 1.6617 9 6 4.0010 -1.8000 3.1143 10 6 4.4660 -2.9548 3.9635 11 8 4.6655 -4.0385 3.4568 12 7 4.6613 -2.7830 5.2859 13 6 5.0838 -3.8337 6.0587 14 1 5.5127 -4.7085 5.5927 15 6 4.9603 -3.7730 7.4413 16 7 4.0895 -2.9547 7.9879 17 14 6.0322 -4.8549 8.5231 18 1 6.9241 -5.6798 7.6692 19 1 6.8547 -4.0006 9.4171 20 1 5.1703 -5.7437 9.3431 21 6 4.4209 -1.4738 5.8979 22 6 2.9560 -1.3323 6.2221 23 8 2.1913 -2.2328 5.9684 24 8 2.5008 -0.2062 6.7936 25 8 2.0326 -0.7237 1.1444 26 1 -0.3634 0.5005 0.8975 27 1 -0.3633 0.5271 -0.8822 28 1 -0.3633 -1.0275 -0.0154 29 1 1.3276 -1.4919 -1.5773 30 1 2.3429 -0.0839 -2.0214 31 1 4.2142 -1.1750 -1.2161 32 1 3.1997 -2.5846 -0.7743 33 1 4.8245 -2.6129 1.2971 34 1 3.1318 -3.0685 1.6056 35 1 3.0365 -1.4466 3.4788 36 1 4.7292 -0.9908 3.1703 37 1 4.0031 -2.9126 8.9532 38 1 4.7168 -0.6880 5.2029 39 1 5.0056 -1.3880 6.8138 40 1 1.5535 -0.1616 6.9824 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828221272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:38 Heat of formation + Delta-G solvation = -198.755161 kcal Electronic energy + Delta-G solvation = -23561.401872 eV Core-core repulsion = 19954.252756 eV Total energy + Delta-G solvation = -3607.149115 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.27836 -40.53508 -39.87504 -37.06867 -36.37993 -34.82428 -33.71594 -33.12005 -31.51854 -29.50606 -27.97259 -26.25780 -23.91260 -22.81142 -22.24177 -21.67878 -20.50556 -19.02288 -18.69438 -18.04461 -17.49320 -17.39475 -16.91896 -16.49079 -16.21629 -15.91087 -15.69539 -15.66950 -14.68334 -14.45592 -14.20078 -13.97861 -13.66360 -13.52489 -13.35132 -13.28556 -13.04945 -12.71669 -12.56833 -12.48702 -12.36328 -12.19259 -12.11800 -11.97286 -11.73359 -11.62129 -11.51840 -11.46312 -10.96596 -10.62149 -10.42759 -9.87015 -8.43914 -5.95543 1.35037 1.42303 1.57091 1.71125 1.87718 2.26663 2.54434 2.94350 2.94456 3.10735 3.65235 3.73615 3.94193 4.00593 4.06736 4.13668 4.29190 4.36121 4.43198 4.53004 4.62166 4.67536 4.71216 4.75900 4.85412 4.93979 4.97431 4.98327 5.15006 5.20118 5.22609 5.28531 5.33365 5.45565 5.95364 6.01748 6.08719 6.39359 7.10712 7.30491 7.46000 7.93753 8.63260 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.024566 B = 0.004519 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.506586 B = 6195.081891 C = 7023.321942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.057 3.943 3 H 0.082 0.918 4 C -0.144 4.144 5 C -0.150 4.150 6 C 0.076 3.924 7 H 0.089 0.911 8 C -0.086 4.086 9 C -0.119 4.119 10 C 0.447 3.553 11 O -0.624 6.624 12 N -0.447 5.447 13 C -0.343 4.343 14 H 0.078 0.922 15 C -0.002 4.002 16 N -0.894 5.894 17 Si 0.993 3.007 18 H -0.272 1.272 19 H -0.259 1.259 20 H -0.285 1.285 21 C 0.144 3.856 22 C 0.496 3.504 23 O -0.551 6.551 24 O -0.518 6.518 25 O -0.399 6.399 26 H 0.054 0.946 27 H 0.094 0.906 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.274 0.726 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.815 12.914 -12.200 17.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.000 4.000 3 H 0.099 0.901 4 C -0.182 4.182 5 C -0.188 4.188 6 C 0.019 3.981 7 H 0.107 0.893 8 C -0.124 4.124 9 C -0.158 4.158 10 C 0.238 3.762 11 O -0.510 6.510 12 N -0.166 5.166 13 C -0.470 4.470 14 H 0.096 0.904 15 C -0.203 4.203 16 N -0.534 5.534 17 Si 0.817 3.183 18 H -0.197 1.197 19 H -0.183 1.183 20 H -0.211 1.211 21 C 0.018 3.982 22 C 0.338 3.662 23 O -0.440 6.440 24 O -0.330 6.330 25 O -0.320 6.320 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.131 0.869 37 H 0.084 0.916 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -1.679 12.128 -12.196 17.281 hybrid contribution -0.546 -0.974 1.057 1.537 sum -2.224 11.154 -11.139 15.920 Atomic orbital electron populations 1.21828 0.92952 1.02382 1.03130 1.23231 0.95814 0.95951 0.84983 0.90051 1.23025 0.97081 0.99888 0.98210 1.23027 0.99927 1.01326 0.94509 1.23103 0.84446 0.96466 0.94071 0.89288 1.21279 1.01611 0.96843 0.92618 1.21515 1.02241 0.96583 0.95502 1.21136 0.81024 0.90583 0.83443 1.90460 1.57214 1.29858 1.73514 1.43670 1.57543 1.09251 1.06167 1.19671 1.38895 0.99536 0.88941 0.90409 1.25986 0.96864 0.99572 0.97883 1.69901 1.30898 1.40136 1.12422 0.84893 0.77990 0.77932 0.77504 1.19702 1.18304 1.21128 1.20847 0.89457 0.86054 1.01849 1.23885 0.92344 0.78154 0.71770 1.90611 1.59330 1.41503 1.52596 1.84443 1.33375 1.40566 1.74611 1.89203 1.27949 1.75023 1.39796 0.92645 0.88701 0.93129 0.90823 0.88124 0.88189 0.91677 0.89805 0.93943 0.90831 0.86918 0.91572 0.85974 0.86180 0.72805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.52 71.98 0.69 -2.03 16 2 C 0.06 1.18 3.92 31.10 0.12 1.31 16 3 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 4 C -0.14 -2.46 6.64 31.67 0.21 -2.25 16 5 C -0.15 -3.06 6.65 31.67 0.21 -2.85 16 6 C 0.08 1.99 3.26 31.10 0.10 2.09 16 7 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 8 C -0.09 -2.94 4.14 30.60 0.13 -2.82 16 9 C -0.12 -4.55 4.24 29.85 0.13 -4.42 16 10 C 0.45 22.90 7.41 87.66 0.65 23.55 16 11 O -0.62 -36.75 15.62 -3.04 -0.05 -36.80 16 12 N -0.45 -23.47 2.18 -639.60 -1.39 -24.86 16 13 C -0.34 -19.81 9.34 84.04 0.79 -19.02 16 14 H 0.08 4.83 7.37 -2.91 -0.02 4.81 16 15 C 0.00 -0.10 4.87 84.93 0.41 0.31 16 16 N -0.89 -47.57 9.28 21.66 0.20 -47.37 16 17 Si 0.99 42.71 29.60 68.60 2.03 44.74 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 20 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 21 C 0.14 6.26 4.97 85.63 0.43 6.68 16 22 C 0.50 22.35 5.86 71.24 0.42 22.77 16 23 O -0.55 -30.11 16.79 21.96 0.37 -29.74 16 24 O -0.52 -18.17 13.42 -51.44 -0.69 -18.86 16 25 O -0.40 -11.94 10.75 -148.98 -1.60 -13.54 16 26 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.05 1.06 8.12 -2.39 -0.02 1.04 16 29 H 0.07 1.27 7.86 -2.38 -0.02 1.25 16 30 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.06 1.49 7.87 -2.38 -0.02 1.47 16 33 H 0.08 2.78 8.10 -2.39 -0.02 2.76 16 34 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 35 H 0.07 3.01 7.33 -2.39 -0.02 2.99 16 36 H 0.11 3.41 7.42 -2.39 -0.02 3.39 16 37 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 38 H 0.12 4.10 6.69 -2.39 -0.02 4.09 16 39 H 0.12 5.40 6.37 -2.39 -0.02 5.39 16 40 H 0.41 11.07 9.10 -74.06 -0.67 10.39 16 Total: -1.00 -78.41 331.27 3.52 -74.89 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.38 Total: 28.21 kcal Atomic # 6 Polarization: 19.05 SS G_CDS: 4.27 Total: 23.33 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -1.19 Total: -72.23 kcal Atomic # 8 Polarization: -96.97 SS G_CDS: -1.97 Total: -98.94 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -78.41 3.52 -74.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828221272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.864 kcal (2) G-P(sol) polarization free energy of solvation -78.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds